FFCP PHASE1:Hg19::chr19:42400678..42400701,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9138 | |EntrezGene=9138 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=681 | |HGNC=681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-391bp_to_uc002osd.2_5end | |association_with_transcript=-391bp_to_uc002osd.2_5end | ||
|cluster_id=chr19:42400678..42400701,+ | |||
|coexpression_cluster_id=C1823 | |coexpression_cluster_id=C1823 | ||
|description=CAGE_peak_4_at_ARHGEF1_5end | |description=CAGE_peak_4_at_ARHGEF1_5end | ||
|id=chr19:42400678..42400701,+ | |id=chr19:42400678..42400701,+ | ||
|ontology_enrichment_celltype=CL:0000037!4.34e-20!172;CL:0000566!4.34e-20!172;CL:0002032!1.76e-19!165;CL:0000837!1.76e-19!165;CL:0000738!1.82e-18!140;CL:0000988!3.09e-18!182;CL:0002087!7.39e-17!119;CL:0002031!6.20e-15!124;CL:0000542!1.72e-13!53;CL:0000051!1.72e-13!53;CL:0000838!4.05e-13!52;CL:0000084!5.55e-08!25;CL:0000827!5.55e-08!25;CL:0000763!5.79e-08!112;CL:0000049!5.79e-08!112;CL:0000791!7.81e-08!18;CL:0000789!7.81e-08!18;CL:0002420!7.81e-08!18;CL:0002419!7.81e-08!18;CL:0000790!7.81e-08!18 | |ontology_enrichment_celltype=CL:0000037!4.34e-20!172;CL:0000566!4.34e-20!172;CL:0002032!1.76e-19!165;CL:0000837!1.76e-19!165;CL:0000738!1.82e-18!140;CL:0000988!3.09e-18!182;CL:0002087!7.39e-17!119;CL:0002031!6.20e-15!124;CL:0000542!1.72e-13!53;CL:0000051!1.72e-13!53;CL:0000838!4.05e-13!52;CL:0000084!5.55e-08!25;CL:0000827!5.55e-08!25;CL:0000763!5.79e-08!112;CL:0000049!5.79e-08!112;CL:0000791!7.81e-08!18;CL:0000789!7.81e-08!18;CL:0002420!7.81e-08!18;CL:0002419!7.81e-08!18;CL:0000790!7.81e-08!18 | ||
|ontology_enrichment_celltype_v019=CL:0000084;1.91e-10;25!CL:0000542;3.24e-09;53!CL:0000791;3.55e-09;18!CL:0000789;3.55e-09;18!CL:0002419;3.55e-09;18!CL:0002087;9.33e-08;104!CL:0000624;4.85e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,4.68e-23,168;CL:0002087,1.92e-22,115;CL:0000738,6.37e-22,136;CL:0002032,1.31e-21,161;CL:0000837,1.31e-21,161;CL:0000988,5.40e-21,177;CL:0002031,1.30e-17,120;CL:0000542,3.54e-16,53;CL:0000051,3.54e-16,53;CL:0000838,1.29e-15,52;CL:0000084,2.55e-10,25;CL:0000827,2.55e-10,25;CL:0000791,2.83e-09,18;CL:0000789,2.83e-09,18;CL:0002420,2.83e-09,18;CL:0002419,2.83e-09,18;CL:0000790,2.83e-09,18;CL:0000763,4.95e-08,108;CL:0000049,4.95e-08,108;CL:0000860,9.58e-08,42;CL:0002057,9.58e-08,42;CL:0000766,3.81e-07,72;CL:0000624,5.34e-07,6 | |||
|ontology_enrichment_development_v019=CL:0000051;3.24e-09;53!CL:0000790;3.55e-09;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!5.12e-12!115;UBERON:0000178!4.51e-08!15;UBERON:0000179!4.51e-08!15;UBERON:0000463!4.51e-08!15;UBERON:0002390!1.94e-07!102;UBERON:0003061!1.94e-07!102 | |ontology_enrichment_uberon=UBERON:0007023!5.12e-12!115;UBERON:0000178!4.51e-08!15;UBERON:0000179!4.51e-08!15;UBERON:0000463!4.51e-08!15;UBERON:0002390!1.94e-07!102;UBERON:0003061!1.94e-07!102 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;4.17e-10;15!UBERON:0000179;4.17e-10;15!UBERON:0000463;4.17e-10;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.80e-10,114;UBERON:0000178,4.20e-10,15;UBERON:0000179,4.20e-10,15;UBERON:0000463,4.20e-10,15;UBERON:0002390,2.48e-09,98;UBERON:0003061,2.48e-09,98;UBERON:0002193,2.08e-08,108 | |||
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| ||
|short_description=p4@ARHGEF1 | |short_description=p4@ARHGEF1 | ||
}} | }} |
Latest revision as of 07:13, 18 September 2015
Short description: | p4@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ARHGEF1_5end |
Coexpression cluster: | C1823_acute_CD4_Neutrophils_thymus_Whole_CD8_duodenum |
Association with transcript: | -391bp_to_uc002osd.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 4.68e-23 | 168 |
nongranular leukocyte | 1.92e-22 | 115 |
leukocyte | 6.37e-22 | 136 |
hematopoietic oligopotent progenitor cell | 1.31e-21 | 161 |
hematopoietic multipotent progenitor cell | 1.31e-21 | 161 |
hematopoietic cell | 5.40e-21 | 177 |
hematopoietic lineage restricted progenitor cell | 1.30e-17 | 120 |
lymphocyte | 3.54e-16 | 53 |
common lymphoid progenitor | 3.54e-16 | 53 |
lymphoid lineage restricted progenitor cell | 1.29e-15 | 52 |
T cell | 2.55e-10 | 25 |
pro-T cell | 2.55e-10 | 25 |
mature alpha-beta T cell | 2.83e-09 | 18 |
alpha-beta T cell | 2.83e-09 | 18 |
immature T cell | 2.83e-09 | 18 |
mature T cell | 2.83e-09 | 18 |
immature alpha-beta T cell | 2.83e-09 | 18 |
myeloid cell | 4.95e-08 | 108 |
common myeloid progenitor | 4.95e-08 | 108 |
classical monocyte | 9.58e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 9.58e-08 | 42 |
myeloid leukocyte | 3.81e-07 | 72 |
CD4-positive, alpha-beta T cell | 5.34e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.80e-10 | 114 |
blood | 4.20e-10 | 15 |
haemolymphatic fluid | 4.20e-10 | 15 |
organism substance | 4.20e-10 | 15 |
hematopoietic system | 2.48e-09 | 98 |
blood island | 2.48e-09 | 98 |
hemolymphoid system | 2.08e-08 | 108 |