FFCP PHASE1:Hg19::chr20:37230495..37230509,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=343578 | |EntrezGene=343578 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16226 | |HGNC=16226 | ||
|TSSclassifier=strong | |||
|UniProt=Q5TG30 | |UniProt=Q5TG30 | ||
|association_with_transcript=-67bp_to_ENST00000373345,NM_001164431_5end | |association_with_transcript=-67bp_to_ENST00000373345,NM_001164431_5end | ||
|cluster_id=chr20:37230495..37230509,+ | |||
|coexpression_cluster_id=C4031 | |coexpression_cluster_id=C4031 | ||
|description=CAGE_peak_2_at_ARHGAP40_5end | |description=CAGE_peak_2_at_ARHGAP40_5end | ||
|id=chr20:37230495..37230509,+ | |id=chr20:37230495..37230509,+ | ||
|ontology_enrichment_celltype=CL:0000066!9.15e-23!254;CL:0002076!1.91e-16!43;CL:0000223!2.88e-12!59;CL:0000039!3.76e-12!7;CL:0000586!3.76e-12!7;CL:0002368!4.25e-08!13;CL:0002251!3.04e-07!21;CL:0000349!6.53e-07!3;CL:0002577!6.53e-07!3 | |ontology_enrichment_celltype=CL:0000066!9.15e-23!254;CL:0002076!1.91e-16!43;CL:0000223!2.88e-12!59;CL:0000039!3.76e-12!7;CL:0000586!3.76e-12!7;CL:0002368!4.25e-08!13;CL:0002251!3.04e-07!21;CL:0000349!6.53e-07!3;CL:0002577!6.53e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002577;2.04e-21;3!CL:0000349;5.61e-17;19!CL:0000039;2.66e-16;7!CL:0000586;2.66e-16;7!CL:0002536;1.57e-14;2!CL:0002368;1.07e-08;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002577,1.02e-21,3;CL:0000349,4.13e-17,19;CL:0000039,2.95e-16,7;CL:0000586,2.95e-16,7;CL:0002536,8.41e-15,2;CL:0002368,9.44e-09,13;CL:0002076,3.09e-07,42;CL:0000066,4.15e-07,253 | |||
|ontology_enrichment_development_v019=UBERON:0008814;1.57e-14;2!UBERON:0010056;1.57e-14;2 | |||
|ontology_enrichment_disease=DOID:1749!1.59e-12!14;DOID:305!3.67e-09!106;DOID:0050687!8.15e-07!143 | |ontology_enrichment_disease=DOID:1749!1.59e-12!14;DOID:305!3.67e-09!106;DOID:0050687!8.15e-07!143 | ||
|ontology_enrichment_disease_v019=DOID:3095;6.86e-08;22!DOID:2994;6.86e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.13e-08,22;DOID:2994,7.13e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0005631!6.39e-14!14;UBERON:0000158!6.39e-14!14;UBERON:0000464!3.63e-10!104;UBERON:0000344!1.67e-09!12;UBERON:0004119!3.19e-09!169;UBERON:0000925!3.19e-09!169;UBERON:0006595!3.19e-09!169;UBERON:0003124!5.59e-09!7;UBERON:0000161!5.83e-09!35;UBERON:0003135!7.68e-09!11;UBERON:0000466!8.25e-09!126;UBERON:0006554!1.38e-08!44;UBERON:0001008!2.73e-08!45;UBERON:0002553!3.64e-08!70;UBERON:0003101!4.28e-08!22;UBERON:0000079!4.28e-08!22;UBERON:0005156!4.94e-08!59;UBERON:0000990!4.94e-08!59;UBERON:0003729!7.52e-08!5;UBERON:0000166!1.78e-07!21;UBERON:0003133!3.61e-07!48;UBERON:0000473!4.56e-07!8;UBERON:0003886!5.29e-07!63;UBERON:0000058!5.71e-07!26;UBERON:0000478!5.94e-07!24;UBERON:0004923!6.41e-07!57;UBERON:0001004!9.57e-07!72 | |ontology_enrichment_uberon=UBERON:0005631!6.39e-14!14;UBERON:0000158!6.39e-14!14;UBERON:0000464!3.63e-10!104;UBERON:0000344!1.67e-09!12;UBERON:0004119!3.19e-09!169;UBERON:0000925!3.19e-09!169;UBERON:0006595!3.19e-09!169;UBERON:0003124!5.59e-09!7;UBERON:0000161!5.83e-09!35;UBERON:0003135!7.68e-09!11;UBERON:0000466!8.25e-09!126;UBERON:0006554!1.38e-08!44;UBERON:0001008!2.73e-08!45;UBERON:0002553!3.64e-08!70;UBERON:0003101!4.28e-08!22;UBERON:0000079!4.28e-08!22;UBERON:0005156!4.94e-08!59;UBERON:0000990!4.94e-08!59;UBERON:0003729!7.52e-08!5;UBERON:0000166!1.78e-07!21;UBERON:0003133!3.61e-07!48;UBERON:0000473!4.56e-07!8;UBERON:0003886!5.29e-07!63;UBERON:0000058!5.71e-07!26;UBERON:0000478!5.94e-07!24;UBERON:0004923!6.41e-07!57;UBERON:0001004!9.57e-07!72 | ||
|ontology_enrichment_uberon_v019=UBERON:0001987;3.25e-16;4!UBERON:0000478;2.83e-13;24!UBERON:0005631;3.24e-11;10!UBERON:0000158;3.24e-11;10!UBERON:0001723;5.42e-10;3!UBERON:0001033;5.42e-10;3!UBERON:0000305;1.85e-09;7!UBERON:0001301;1.13e-08;1!UBERON:0002372;4.10e-08;1!UBERON:0007029;4.10e-08;1!UBERON:0001961;4.10e-08;1!UBERON:0001744;4.10e-08;1!UBERON:0001042;4.10e-08;1!UBERON:0001735;4.10e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.70e-23,14;UBERON:0000158,1.70e-23,14;UBERON:0001987,1.93e-16,4;UBERON:0004340,1.93e-16,4;UBERON:0003124,4.91e-16,7;UBERON:0000478,2.23e-13,24;UBERON:0001723,7.46e-10,3;UBERON:0001033,7.46e-10,3;UBERON:0010056,7.46e-10,3;UBERON:0004175,1.27e-09,25;UBERON:0000305,1.40e-09,7;UBERON:0001301,1.13e-08,1;UBERON:0004871,1.93e-08,8;UBERON:0003133,2.97e-08,48;UBERON:0007029,3.83e-08,1;UBERON:0000995,3.87e-08,21;UBERON:0002372,5.82e-08,1;UBERON:0001961,5.82e-08,1;UBERON:0001744,5.82e-08,1;UBERON:0001735,5.82e-08,1;UBERON:0005795,9.30e-08,22;UBERON:0003975,9.30e-08,22;UBERON:0004923,4.78e-07,66 | |||
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| ||
|short_description=p2@ARHGAP40 | |short_description=p2@ARHGAP40 | ||
}} | }} |
Latest revision as of 03:52, 16 September 2015
Short description: | p2@ARHGAP40 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARHGAP40_5end |
Coexpression cluster: | C4031_Small_teratocarcinoma_epididymis_Placental_clear_amniotic_Bronchial |
Association with transcript: | -67bp_to_ENST00000373345, NM_001164431_5end |
EntrezGene: | ARHGAP40 |
HGNC: | 16226 |
UniProt: | Q5TG30 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
placental epithelial cell | 1.02e-21 | 3 |
extraembryonic cell | 4.13e-17 | 19 |
germ line cell | 2.95e-16 | 7 |
germ cell | 2.95e-16 | 7 |
amniotic epithelial cell | 8.41e-15 | 2 |
respiratory epithelial cell | 9.44e-09 | 13 |
endo-epithelial cell | 3.09e-07 | 42 |
epithelial cell | 4.15e-07 | 253 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.70e-23 | 14 |
membranous layer | 1.70e-23 | 14 |
placenta | 1.93e-16 | 4 |
allantois | 1.93e-16 | 4 |
chorion | 4.91e-16 | 7 |
extraembryonic structure | 2.23e-13 | 24 |
tongue | 7.46e-10 | 3 |
gustatory system | 7.46e-10 | 3 |
future tongue | 7.46e-10 | 3 |
internal genitalia | 1.27e-09 | 25 |
amnion | 1.40e-09 | 7 |
epididymis | 1.13e-08 | 1 |
somatic layer of lateral plate mesoderm | 1.93e-08 | 8 |
reproductive organ | 2.97e-08 | 48 |
surface | 3.83e-08 | 1 |
uterus | 3.87e-08 | 21 |
tonsil | 5.82e-08 | 1 |
mucosa-associated lymphoid tissue | 5.82e-08 | 1 |
lymphoid tissue | 5.82e-08 | 1 |
tonsillar ring | 5.82e-08 | 1 |
embryonic uterus | 9.30e-08 | 22 |
internal female genitalia | 9.30e-08 | 22 |
organ component layer | 4.78e-07 | 66 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.13e-08 | 22 |
germ cell cancer | 7.13e-08 | 22 |