UBERON:0010409: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0010409
|name=eye surface
|namespace=
|def=
|xref=MA:0002486
|is_a=UBERON:0003102;;UBERON:0004121
|synonym=
|comment=
|alt_id=
|disjoint_from=
|...") |
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{{UBERON | {{UBERON | ||
| | |alt_id= | ||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
| | |def= | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=UBERON:0010409 | |||
|is_a=UBERON:0003102 ;;UBERON:0004121 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|part_of= | |name=eye surface | ||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of=UBERON:0000019 | |||
|preceded_by= | |||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
| | |subset= | ||
| | |synonym= | ||
|union_of= | |||
|xref=MA:0002486 | |||
}} | }} | ||
Latest revision as of 18:09, 12 September 2014
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003102(surface structure),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| part_of: | UBERON:0000019(camera-type eye) |
Children
| part of: | UBERON:0000964 (cornea),UBERON:0001811 (conjunctiva) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11526-119I5 (Corneal Epithelial Cells, donor1)
- 11527-119I6 (Keratocytes, donor1)
- 11606-120I4 (Corneal Epithelial Cells, donor2)
- 11607-120I5 (Keratocytes, donor2)
- 11687-122I4 (Corneal Epithelial Cells, donor3)
- 11688-122I5 (Keratocytes, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010409 (eye surface), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.67e-66 | FFCP PHASE2:Hg19::chr17:39023189..39023197,-#_74aa7265212571a768d2e796b132e916 | p2@KRT12 |
| 4.67e-66 | FFCP PHASE1:Hg19::chr17:39023189..39023197,-#_74aa7265212571a768d2e796b132e916 | p2@KRT12 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:150910973..150910976,-#_b8ff2c2304d18430cb9c2d05529740e7 | p@chr7:150910973..150910976, - |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:52362029..52362031,+#_b8ff2c2304d18430cb9c2d05529740e7 | p@chr3:52362029..52362031, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:150910973..150910976,-#_b8ff2c2304d18430cb9c2d05529740e7 | p@chr7:150910973..150910976, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:52362029..52362031,+#_b8ff2c2304d18430cb9c2d05529740e7 | p@chr3:52362029..52362031, + |
| 3.31e-40 | FFCP PHASE2:Hg19::chr12:53189894..53189905,-#_b4a87d06d6db41be1692bb124ce22141 | p1@KRT3 |
| 3.31e-40 | FFCP PHASE1:Hg19::chr12:53189894..53189905,-#_b4a87d06d6db41be1692bb124ce22141 | p1@KRT3 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr22:30144620..30144638,-#_0c209e55269ad162e8168f9d53581507 | p7@ZMAT5 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr22:30144620..30144638,-#_0c209e55269ad162e8168f9d53581507 | p7@ZMAT5 |
| 1.17e-33 | FFCP PHASE2:Hg19::chr8:124206334..124206344,+#_ceda09cb55ef5df3cf676fceb71793ea | p@chr8:124206334..124206344, + |
| 1.17e-33 | FFCP PHASE1:Hg19::chr8:124206334..124206344,+#_ceda09cb55ef5df3cf676fceb71793ea | p@chr8:124206334..124206344, + |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:19403546..19403571,-#_bd8878fb25a7aed6193c300da9c857af | p@chr1:19403546..19403571, - |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:19403546..19403571,-#_bd8878fb25a7aed6193c300da9c857af | p@chr1:19403546..19403571, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr7:1600419..1600429,-#_bd8878fb25a7aed6193c300da9c857af | p11@TMEM184A |
| 3.16e-29 | FFCP PHASE2:Hg19::chr7:1600419..1600429,-#_bd8878fb25a7aed6193c300da9c857af | p11@TMEM184A |
| 5.61e-29 | FFCP PHASE2:Hg19::chr20:43743762..43743770,-#_49906fb6fb90777f167e06a1f170f37f | p3@WFDC5 |
| 5.61e-29 | FFCP PHASE2:Hg19::chr12:48164790..48164808,-#_49906fb6fb90777f167e06a1f170f37f | p16@RAPGEF3 |
| 5.61e-29 | FFCP PHASE1:Hg19::chr12:48164790..48164808,-#_49906fb6fb90777f167e06a1f170f37f | p16@RAPGEF3 |
| 5.61e-29 | FFCP PHASE1:Hg19::chr20:43743762..43743770,-#_49906fb6fb90777f167e06a1f170f37f | p3@WFDC5 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr16:3014251..3014254,+#_005f59cfe526ac4f44230a89f92efdd0 | p3@KREMEN2 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr16:3014251..3014254,+#_005f59cfe526ac4f44230a89f92efdd0 | p3@KREMEN2 |
| 6.73e-26 | FFCP PHASE2:Hg19::chr6:35048829..35048844,+#_2ea93b86cdfbf5acef262a25bd36faf3 | p@chr6:35048829..35048844, + |
| 6.73e-26 | FFCP PHASE1:Hg19::chr6:35048829..35048844,+#_2ea93b86cdfbf5acef262a25bd36faf3 | p@chr6:35048829..35048844, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr15:49255230..49255248,-#_feda9a965ac0b1480288b36ee47d0b95 | p16@SHC4 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:113369869..113369877,+#_feda9a965ac0b1480288b36ee47d0b95 | p@chr6:113369869..113369877, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:22932230..22932233,-#_feda9a965ac0b1480288b36ee47d0b95 | p5@ENST00000520840, p5@ENST00000523806 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr15:49255230..49255248,-#_feda9a965ac0b1480288b36ee47d0b95 | p16@SHC4 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:56368957..56368963,+#_feda9a965ac0b1480288b36ee47d0b95 | p@chr16:56368957..56368963, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:92617531..92617541,-#_feda9a965ac0b1480288b36ee47d0b95 | p8@HTR7 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:22932230..22932233,-#_feda9a965ac0b1480288b36ee47d0b95 | p5@ENST00000520840, p5@ENST00000523806 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr16:56368957..56368963,+#_feda9a965ac0b1480288b36ee47d0b95 | p@chr16:56368957..56368963, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:92617531..92617541,-#_feda9a965ac0b1480288b36ee47d0b95 | p8@HTR7 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:113369869..113369877,+#_feda9a965ac0b1480288b36ee47d0b95 | p@chr6:113369869..113369877, + |
| 8.66e-26 | FFCP PHASE2:Hg19::chr11:67463189..67463193,-#_c81c7f08f4f8e3310a858b4525e92638 | p@chr11:67463189..67463193, - |
| 8.66e-26 | FFCP PHASE1:Hg19::chr11:67463189..67463193,-#_c81c7f08f4f8e3310a858b4525e92638 | p@chr11:67463189..67463193, - |
| 1.0e-22 | FFCP PHASE2:Hg19::chr12:46897588..46897603,+#_0048082c06af3255cd0cdd58554e7610 | p@chr12:46897588..46897603, + |
| 1.0e-22 | FFCP PHASE1:Hg19::chr12:46897588..46897603,+#_0048082c06af3255cd0cdd58554e7610 | p@chr12:46897588..46897603, + |
| 1.12e-22 | FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_bae5b9dc5e11888f2b4d03d8446c819b | p@chr13:20934450..20934456, + |
| 1.12e-22 | FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_bae5b9dc5e11888f2b4d03d8446c819b | p@chr13:20934450..20934456, + |
| 1.25e-22 | FFCP PHASE1:Hg19::chr19:51538096..51538109,-#_1eefb63f7596d632ef0c12889206c525 | p5@KLK12 |
| 1.25e-22 | FFCP PHASE2:Hg19::chr19:51538096..51538109,-#_1eefb63f7596d632ef0c12889206c525 | p5@KLK12 |
| 5.17e-21 | FFCP PHASE2:Hg19::chr10:5529595..5529606,-#_ad1ec3a39a6932f587535a0a9015486e | p@chr10:5529595..5529606, - |
| 5.17e-21 | FFCP PHASE1:Hg19::chr10:5529595..5529606,-#_ad1ec3a39a6932f587535a0a9015486e | p@chr10:5529595..5529606, - |
| 7.74e-21 | FFCP PHASE1:Hg19::chr19:1249729..1249741,+#_82dabf6b6fffe170c33e33210e8f96e3 | p19@MIDN |
| 7.74e-21 | FFCP PHASE2:Hg19::chr19:1249729..1249741,+#_82dabf6b6fffe170c33e33210e8f96e3 | p19@MIDN |
| 1.15e-20 | FFCP PHASE1:Hg19::chr2:131669803..131669810,+#_79851b69bae830c06103ee69336a20dc | p@chr2:131669803..131669810, + |
| 1.15e-20 | FFCP PHASE2:Hg19::chr2:131669803..131669810,+#_79851b69bae830c06103ee69336a20dc | p@chr2:131669803..131669810, + |
| 1.28e-20 | FFCP PHASE2:Hg19::chr9:127212697..127212708,+#_48f1f3e9789f4959c73572ac3541647f | p@chr9:127212697..127212708, + |
| 1.28e-20 | FFCP PHASE1:Hg19::chr9:127212697..127212708,+#_48f1f3e9789f4959c73572ac3541647f | p@chr9:127212697..127212708, + |
| 1.56e-20 | FFCP PHASE1:Hg19::chr19:1905001..1905006,+#_6c7bba0829b4ff9134a990052fd1165f | p11@SCAMP4 |
| 1.56e-20 | FFCP PHASE2:Hg19::chr19:1905001..1905006,+#_6c7bba0829b4ff9134a990052fd1165f | p11@SCAMP4 |
| 1.9e-20 | FFCP PHASE1:Hg19::chr19:50709335..50709346,+#_fb13685601f09b44dfa1de5d24eee4bf | p@chr19:50709335..50709346, + |
| 1.9e-20 | FFCP PHASE1:Hg19::chr15:72490099..72490109,-#_fb13685601f09b44dfa1de5d24eee4bf | p3@GRAMD2 |
| 1.9e-20 | FFCP PHASE2:Hg19::chr19:50709335..50709346,+#_fb13685601f09b44dfa1de5d24eee4bf | p@chr19:50709335..50709346, + |
| 1.9e-20 | FFCP PHASE2:Hg19::chr15:72490099..72490109,-#_fb13685601f09b44dfa1de5d24eee4bf | p3@GRAMD2 |
| 2.76e-19 | FFCP PHASE1:Hg19::chr20:25176603..25176614,+#_d7e88b0081f5672004f4c93bec298f4f | p@chr20:25176603..25176614, + |
| 2.76e-19 | FFCP PHASE2:Hg19::chr20:25176603..25176614,+#_d7e88b0081f5672004f4c93bec298f4f | p@chr20:25176603..25176614, + |
| 6.77e-19 | FFCP PHASE1:Hg19::chr19:44306567..44306574,-#_60792848ed6af531f924300ae77d15a1 | p7@LYPD5 |
| 6.77e-19 | FFCP PHASE2:Hg19::chr19:44306567..44306574,-#_60792848ed6af531f924300ae77d15a1 | p7@LYPD5 |
| 8.88e-19 | FFCP PHASE1:Hg19::chr2:28853455..28853476,+#_5a027a1a83c37742b3590519d47329f6 | p@chr2:28853455..28853476, + |
| 8.88e-19 | FFCP PHASE2:Hg19::chr2:28853455..28853476,+#_5a027a1a83c37742b3590519d47329f6 | p@chr2:28853455..28853476, + |
| 9.72e-19 | FFCP PHASE1:Hg19::chr20:42816206..42816211,-#_e3dfb940cefc55bf4b371c536acd5d71 | p8@JPH2 |
| 9.72e-19 | FFCP PHASE1:Hg19::chr19:51538121..51538134,-#_e3dfb940cefc55bf4b371c536acd5d71 | p4@KLK12 |
| 9.72e-19 | FFCP PHASE2:Hg19::chr20:42816206..42816211,-#_e3dfb940cefc55bf4b371c536acd5d71 | p8@JPH2 |
| 9.72e-19 | FFCP PHASE2:Hg19::chr19:51538121..51538134,-#_e3dfb940cefc55bf4b371c536acd5d71 | p4@KLK12 |
| 8.69e-18 | FFCP PHASE1:Hg19::chr21:47410794..47410799,+#_a665756c8a38e6c6ce7b7ba13dfe411e | p@chr21:47410794..47410799, + |
| 8.69e-18 | FFCP PHASE1:Hg19::chr6:151770193..151770196,-#_a665756c8a38e6c6ce7b7ba13dfe411e | p@chr6:151770193..151770196, - |
| 8.69e-18 | FFCP PHASE2:Hg19::chr1:44820685..44820695,-#_a665756c8a38e6c6ce7b7ba13dfe411e | p10@ERI3 |
| 8.69e-18 | FFCP PHASE2:Hg19::chr21:47410794..47410799,+#_a665756c8a38e6c6ce7b7ba13dfe411e | p@chr21:47410794..47410799, + |
| 8.69e-18 | FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_a665756c8a38e6c6ce7b7ba13dfe411e | p@chr3:124535316..124535340, + |
| 8.69e-18 | FFCP PHASE2:Hg19::chr6:151770193..151770196,-#_a665756c8a38e6c6ce7b7ba13dfe411e | p@chr6:151770193..151770196, - |
| 8.69e-18 | FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_a665756c8a38e6c6ce7b7ba13dfe411e | p@chr3:124535316..124535340, + |
| 8.69e-18 | FFCP PHASE1:Hg19::chr5:59064162..59064173,-#_a665756c8a38e6c6ce7b7ba13dfe411e | p72@PDE4D |
| 8.69e-18 | FFCP PHASE1:Hg19::chr1:44820685..44820695,-#_a665756c8a38e6c6ce7b7ba13dfe411e | p10@ERI3 |
| 8.69e-18 | FFCP PHASE2:Hg19::chr5:59064162..59064173,-#_a665756c8a38e6c6ce7b7ba13dfe411e | p72@PDE4D |
| 1.03e-17 | FFCP PHASE2:Hg19::chr10:43133595..43133606,-#_c81a3dfad2f9824d1a099cc9673e806c | p@chr10:43133595..43133606, - |
| 1.03e-17 | FFCP PHASE2:Hg19::chr11:65265332..65265342,+#_c81a3dfad2f9824d1a099cc9673e806c | p19@MALAT1 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr15:101459410..101459421,-#_c81a3dfad2f9824d1a099cc9673e806c | p2@ENST00000560068 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr1:9970194..9970195,-#_c81a3dfad2f9824d1a099cc9673e806c | p14@CTNNBIP1 |
| 1.03e-17 | FFCP PHASE2:Hg19::chr15:101459410..101459421,-#_c81a3dfad2f9824d1a099cc9673e806c | p2@ENST00000560068 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_c81a3dfad2f9824d1a099cc9673e806c | p@chr10:74020629..74020634, - |
| 1.03e-17 | FFCP PHASE1:Hg19::chr10:43133595..43133606,-#_c81a3dfad2f9824d1a099cc9673e806c | p@chr10:43133595..43133606, - |
| 1.03e-17 | FFCP PHASE1:Hg19::chr11:65265332..65265342,+#_c81a3dfad2f9824d1a099cc9673e806c | p19@MALAT1 |
| 1.03e-17 | FFCP PHASE2:Hg19::chr1:9970194..9970195,-#_c81a3dfad2f9824d1a099cc9673e806c | p14@CTNNBIP1 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr5:79375654..79375674,+#_c81a3dfad2f9824d1a099cc9673e806c | p@chr5:79375654..79375674, + |
| 1.03e-17 | FFCP PHASE1:Hg19::chr2:25383828..25383855,-#_c81a3dfad2f9824d1a099cc9673e806c | p4@POMC |
| 1.03e-17 | FFCP PHASE2:Hg19::chr5:79375654..79375674,+#_c81a3dfad2f9824d1a099cc9673e806c | p@chr5:79375654..79375674, + |
| 1.03e-17 | FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_c81a3dfad2f9824d1a099cc9673e806c | p@chr10:74020629..74020634, - |
| 1.03e-17 | FFCP PHASE2:Hg19::chr2:25383828..25383855,-#_c81a3dfad2f9824d1a099cc9673e806c | p4@POMC |
| 2.59e-17 | FFCP PHASE2:Hg19::chr11:119039069..119039081,+#_1d175d2a51d6ec1ce52d29a6fc6dca0d | p9@NLRX1 |
| 2.59e-17 | FFCP PHASE1:Hg19::chr11:119039069..119039081,+#_1d175d2a51d6ec1ce52d29a6fc6dca0d | p9@NLRX1 |
| 2.09e-16 | FFCP PHASE2:Hg19::chr12:48164812..48164829,-#_98ea5dea6749352203412851e2a21f80 | p14@RAPGEF3 |
| 2.09e-16 | FFCP PHASE1:Hg19::chr12:48164812..48164829,-#_98ea5dea6749352203412851e2a21f80 | p14@RAPGEF3 |
| 2.64e-16 | FFCP PHASE1:Hg19::chr2:131669791..131669801,+#_e0b2e6f736edd45606ce2f0c93eb7069 | p@chr2:131669791..131669801, + |
| 2.64e-16 | FFCP PHASE2:Hg19::chr2:131669791..131669801,+#_e0b2e6f736edd45606ce2f0c93eb7069 | p@chr2:131669791..131669801, + |
| 3.32e-16 | FFCP PHASE2:Hg19::chr17:39742822..39742850,+#_0b955d810b2c854bbe3384f1e2ca64c1 | p@chr17:39742822..39742850, + |
| 3.32e-16 | FFCP PHASE1:Hg19::chr17:39742822..39742850,+#_0b955d810b2c854bbe3384f1e2ca64c1 | p@chr17:39742822..39742850, + |
| 3.59e-16 | FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_512ad634cfc5b4b6554b23a8cbdbcc14 | p@chr1:3591362..3591369, - |
| 3.59e-16 | FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_512ad634cfc5b4b6554b23a8cbdbcc14 | p@chr1:3591362..3591369, - |
