FFCP PHASE1:Hg19::chr7:20826504..20826526,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=221833 | |EntrezGene=221833 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19196 | |HGNC=19196 | ||
|TSSclassifier=strong | |||
|UniProt=G3XAB2,Q8IXZ3 | |UniProt=G3XAB2,Q8IXZ3 | ||
|association_with_transcript=0bp_to_ENST00000297210,ENST00000361443,ENST00000418710,NM_182700,NM_198956,uc003suy.2,uc003suz.2_5end | |association_with_transcript=0bp_to_ENST00000297210,ENST00000361443,ENST00000418710,NM_182700,NM_198956,uc003suy.2,uc003suz.2_5end | ||
|cluster_id=chr7:20826504..20826526,- | |||
|description=CAGE_peak_1_at_SP8_5end | |description=CAGE_peak_1_at_SP8_5end | ||
|id=chr7:20826504..20826526,- | |id=chr7:20826504..20826526,- | ||
|ontology_enrichment_celltype=CL:0000047!2.54e-13!8;CL:0000039!5.37e-11!7;CL:0000586!5.37e-11!7;CL:0000540!3.24e-10!6;CL:0000031!3.24e-10!6;CL:0000404!3.24e-10!6;CL:0002319!4.90e-10!25;CL:0002322!7.72e-09!5;CL:0000133!5.92e-07!59 | |ontology_enrichment_celltype=CL:0000047!2.54e-13!8;CL:0000039!5.37e-11!7;CL:0000586!5.37e-11!7;CL:0000540!3.24e-10!6;CL:0000031!3.24e-10!6;CL:0000404!3.24e-10!6;CL:0002319!4.90e-10!25;CL:0002322!7.72e-09!5;CL:0000133!5.92e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000540;1.32e-20;6!CL:0000404;1.32e-20;6!CL:0002322;2.62e-17;5!CL:0002319;8.46e-14;25!CL:0002605;9.88e-12;3!CL:0002321;1.44e-10;15!CL:0000039;6.14e-09;7!CL:0000586;6.14e-09;7!CL:0000047;1.49e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.41e-27,8;CL:0000540,1.61e-20,6;CL:0000031,1.61e-20,6;CL:0000404,1.61e-20,6;CL:0002322,1.68e-17,5;CL:0002319,9.30e-14,25;CL:0000133,1.05e-12,59;CL:0002605,1.04e-11,3;CL:0000221,4.62e-11,72;CL:0000039,6.02e-09,7;CL:0000586,6.02e-09,7 | |||
|ontology_enrichment_development_v019=CL:0000031;1.32e-20;6!UBERON:0009117;3.65e-09;10!UBERON:0005564;3.65e-09;10!CL:0000133;2.31e-08;59 | |||
|ontology_enrichment_disease=DOID:305!3.42e-12!106;DOID:0050687!6.97e-12!143;DOID:162!3.41e-09!235;DOID:14566!1.13e-08!239;DOID:3095!2.37e-08!22;DOID:2994!2.37e-08!22 | |ontology_enrichment_disease=DOID:305!3.42e-12!106;DOID:0050687!6.97e-12!143;DOID:162!3.41e-09!235;DOID:14566!1.13e-08!239;DOID:3095!2.37e-08!22;DOID:2994!2.37e-08!22 | ||
|ontology_enrichment_disease_v019=DOID:3095;7.69e-12;22!DOID:2994;7.69e-12;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,7.61e-12,22;DOID:2994,7.61e-12,22;DOID:305,3.54e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001017!6.24e-24!82;UBERON:0000956!1.99e-23!25;UBERON:0000203!1.99e-23!25;UBERON:0005743!3.40e-22!86;UBERON:0000073!1.93e-21!94;UBERON:0001016!1.93e-21!94;UBERON:0001893!7.77e-21!34;UBERON:0001869!1.39e-20!32;UBERON:0002020!1.70e-20!34;UBERON:0003528!1.70e-20!34;UBERON:0002791!8.35e-20!33;UBERON:0001950!2.51e-19!20;UBERON:0002619!3.65e-19!22;UBERON:0002780!1.45e-17!41;UBERON:0001890!1.45e-17!41;UBERON:0006240!1.45e-17!41;UBERON:0003080!5.75e-17!42;UBERON:0000955!1.29e-15!69;UBERON:0006238!1.29e-15!69;UBERON:0001049!1.02e-14!57;UBERON:0005068!1.02e-14!57;UBERON:0006241!1.02e-14!57;UBERON:0007135!1.02e-14!57;UBERON:0002616!9.21e-13!59;UBERON:0004121!3.38e-10!169;UBERON:0000924!1.18e-09!173;UBERON:0006601!1.18e-09!173;UBERON:0003056!2.01e-09!61;UBERON:0001871!1.42e-08!7;UBERON:0003075!2.22e-08!86;UBERON:0007284!2.22e-08!86;UBERON:0002021!4.67e-08!5;UBERON:0003101!7.58e-08!22;UBERON:0000079!7.58e-08!22;UBERON:0002346!1.17e-07!90;UBERON:0005153!3.84e-07!37 | |ontology_enrichment_uberon=UBERON:0001017!6.24e-24!82;UBERON:0000956!1.99e-23!25;UBERON:0000203!1.99e-23!25;UBERON:0005743!3.40e-22!86;UBERON:0000073!1.93e-21!94;UBERON:0001016!1.93e-21!94;UBERON:0001893!7.77e-21!34;UBERON:0001869!1.39e-20!32;UBERON:0002020!1.70e-20!34;UBERON:0003528!1.70e-20!34;UBERON:0002791!8.35e-20!33;UBERON:0001950!2.51e-19!20;UBERON:0002619!3.65e-19!22;UBERON:0002780!1.45e-17!41;UBERON:0001890!1.45e-17!41;UBERON:0006240!1.45e-17!41;UBERON:0003080!5.75e-17!42;UBERON:0000955!1.29e-15!69;UBERON:0006238!1.29e-15!69;UBERON:0001049!1.02e-14!57;UBERON:0005068!1.02e-14!57;UBERON:0006241!1.02e-14!57;UBERON:0007135!1.02e-14!57;UBERON:0002616!9.21e-13!59;UBERON:0004121!3.38e-10!169;UBERON:0000924!1.18e-09!173;UBERON:0006601!1.18e-09!173;UBERON:0003056!2.01e-09!61;UBERON:0001871!1.42e-08!7;UBERON:0003075!2.22e-08!86;UBERON:0007284!2.22e-08!86;UBERON:0002021!4.67e-08!5;UBERON:0003101!7.58e-08!22;UBERON:0000079!7.58e-08!22;UBERON:0002346!1.17e-07!90;UBERON:0005153!3.84e-07!37 | ||
|ontology_enrichment_uberon_v019=UBERON:0000956;5.04e-14;25!UBERON:0000203;5.04e-14;25!UBERON:0002791;1.33e-10;32!UBERON:0001869;1.41e-10;32!UBERON:0000922;1.94e-09;49!UBERON:0001893;2.04e-09;34!UBERON:0001950;3.13e-09;20!UBERON:0003528;7.77e-09;34!UBERON:0002020;7.77e-09;34!UBERON:0002619;2.59e-08;22!UBERON:0000473;8.19e-08;8!UBERON:0003101;3.36e-07;22!UBERON:0000079;3.36e-07;22!UBERON:0002021;9.56e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.61e-14,89;UBERON:0000956,7.39e-14,25;UBERON:0000203,7.39e-14,25;UBERON:0001017,2.87e-13,81;UBERON:0002791,1.99e-10,32;UBERON:0001869,1.99e-10,32;UBERON:0003528,1.06e-09,34;UBERON:0002020,1.06e-09,34;UBERON:0001893,1.06e-09,34;UBERON:0011216,2.25e-09,223;UBERON:0001950,4.29e-09,20;UBERON:0002619,3.44e-08,22;UBERON:0000473,8.05e-08,8;UBERON:0002780,1.02e-07,41;UBERON:0001890,1.02e-07,41;UBERON:0003080,1.02e-07,41;UBERON:0006240,1.02e-07,41;UBERON:0003101,3.05e-07,22;UBERON:0000079,3.05e-07,22 | |||
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| ||
|short_description=p1@SP8 | |short_description=p1@SP8 | ||
}} | }} |
Latest revision as of 17:56, 17 September 2015
Short description: | p1@SP8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SP8_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000297210, ENST00000361443, ENST00000418710, NM_182700, NM_198956, uc003suy.2, uc003suz.2_5end |
EntrezGene: | SP8 |
HGNC: | 19196 |
UniProt: | G3XAB2Q8IXZ3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 2.41e-27 | 8 |
neuron | 1.61e-20 | 6 |
neuroblast | 1.61e-20 | 6 |
electrically signaling cell | 1.61e-20 | 6 |
embryonic stem cell | 1.68e-17 | 5 |
neural cell | 9.30e-14 | 25 |
neurectodermal cell | 1.05e-12 | 59 |
astrocyte of the cerebral cortex | 1.04e-11 | 3 |
ectodermal cell | 4.62e-11 | 72 |
germ line cell | 6.02e-09 | 7 |
germ cell | 6.02e-09 | 7 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.61e-14 | 89 |
cerebral cortex | 7.39e-14 | 25 |
pallium | 7.39e-14 | 25 |
central nervous system | 2.87e-13 | 81 |
regional part of telencephalon | 1.99e-10 | 32 |
cerebral hemisphere | 1.99e-10 | 32 |
brain grey matter | 1.06e-09 | 34 |
gray matter | 1.06e-09 | 34 |
telencephalon | 1.06e-09 | 34 |
organ system subdivision | 2.25e-09 | 223 |
neocortex | 4.29e-09 | 20 |
regional part of cerebral cortex | 3.44e-08 | 22 |
testis | 8.05e-08 | 8 |
regional part of forebrain | 1.02e-07 | 41 |
forebrain | 1.02e-07 | 41 |
anterior neural tube | 1.02e-07 | 41 |
future forebrain | 1.02e-07 | 41 |
male organism | 3.05e-07 | 22 |
male reproductive system | 3.05e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 7.61e-12 | 22 |
germ cell cancer | 7.61e-12 | 22 |
carcinoma | 3.54e-07 | 106 |