FFCP PHASE1:Hg19::chr1:171501493..171501648,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr1:171501493..171501648,+
|short_description=p3@PRRC2C
|description=CAGE_peak_3_at_PRRC2C_5end
|association_with_transcript=-284bp_to_AK297263_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23215 | |EntrezGene=23215 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=24903 | |HGNC=24903 | ||
|TSSclassifier=strong | |||
|UniProt=B4DM27 | |UniProt=B4DM27 | ||
|association_with_transcript=-284bp_to_AK297263_5end | |||
|cluster_id=chr1:171501493..171501648,+ | |||
|coexpression_cluster_id=C852 | |||
|description=CAGE_peak_3_at_PRRC2C_5end | |||
|id=chr1:171501493..171501648,+ | |||
|ontology_enrichment_celltype=CL:0002032!8.55e-13!165;CL:0000837!8.55e-13!165;CL:0000037!2.71e-12!172;CL:0000566!2.71e-12!172;CL:0000763!1.20e-11!112;CL:0000049!1.20e-11!112;CL:0000988!1.35e-10!182;CL:0002057!4.39e-10!42;CL:0000860!4.93e-10!45;CL:0002087!1.28e-08!119;CL:0000738!1.56e-08!140;CL:0000766!7.52e-08!76;CL:0002194!2.96e-07!63;CL:0000576!2.96e-07!63;CL:0000040!2.96e-07!63;CL:0000559!2.96e-07!63;CL:0002031!3.19e-07!124;CL:0002009!5.90e-07!65 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.97e-12;33!CL:0002057;1.97e-12;33!CL:0000473;3.01e-09;39!CL:0000234;3.01e-09;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0002032,2.10e-12,161;CL:0000837,2.10e-12,161;CL:0000037,7.55e-12,168;CL:0000763,2.51e-11,108;CL:0000049,2.51e-11,108;CL:0000988,2.17e-10,177;CL:0000860,5.34e-10,42;CL:0002057,5.34e-10,42;CL:0000473,4.95e-09,48;CL:0000234,4.95e-09,48;CL:0002087,2.57e-08,115;CL:0000738,3.44e-08,136;CL:0000766,1.31e-07,72;CL:0002194,5.04e-07,59;CL:0000576,5.04e-07,59;CL:0000040,5.04e-07,59;CL:0000559,5.04e-07,59;CL:0002031,6.96e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;6.98e-08;42 | |||
|ontology_enrichment_disease=DOID:162!1.42e-17!235;DOID:14566!1.04e-16!239;DOID:0050687!4.70e-09!143;DOID:2531!9.43e-09!51;DOID:0060083!9.43e-09!51;DOID:0050686!1.15e-08!137;DOID:1240!3.25e-08!39;DOID:8692!4.42e-07!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;4.10e-07;39!DOID:8692;6.30e-07;31 | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.62e-17,235;DOID:14566,1.26e-16,239;DOID:0050687,5.47e-09,143;DOID:2531,8.97e-09,51;DOID:0060083,8.97e-09,51;DOID:0050686,1.25e-08,137;DOID:1240,3.10e-08,39;DOID:8692,4.26e-07,31 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.50e-08!115;UBERON:0001049!1.03e-07!57;UBERON:0005068!1.03e-07!57;UBERON:0006241!1.03e-07!57;UBERON:0007135!1.03e-07!57;UBERON:0002780!8.29e-07!41;UBERON:0001890!8.29e-07!41;UBERON:0006240!8.29e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.79e-08,56;UBERON:0005068,7.79e-08,56;UBERON:0006241,7.79e-08,56;UBERON:0007135,7.79e-08,56;UBERON:0007023,9.46e-08,114;UBERON:0000073,5.50e-07,53;UBERON:0002616,5.50e-07,53;UBERON:0001016,6.34e-07,89;UBERON:0001017,7.17e-07,81;UBERON:0002780,9.54e-07,41;UBERON:0001890,9.54e-07,41;UBERON:0003080,9.54e-07,41;UBERON:0006240,9.54e-07,41 | |||
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| ||
|short_description=p3@PRRC2C | |||
}} | }} |
Latest revision as of 15:19, 18 September 2015
Short description: | p3@PRRC2C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRRC2C_5end |
Coexpression cluster: | C852_CD14_CD4_Neutrophils_CD8_Natural_acute_neuroectodermal |
Association with transcript: | -284bp_to_AK297263_5end |
EntrezGene: | PRRC2C |
HGNC: | 24903 |
UniProt: | B4DM27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic oligopotent progenitor cell | 2.10e-12 | 161 |
hematopoietic multipotent progenitor cell | 2.10e-12 | 161 |
hematopoietic stem cell | 7.55e-12 | 168 |
myeloid cell | 2.51e-11 | 108 |
common myeloid progenitor | 2.51e-11 | 108 |
hematopoietic cell | 2.17e-10 | 177 |
classical monocyte | 5.34e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.34e-10 | 42 |
defensive cell | 4.95e-09 | 48 |
phagocyte | 4.95e-09 | 48 |
nongranular leukocyte | 2.57e-08 | 115 |
leukocyte | 3.44e-08 | 136 |
myeloid leukocyte | 1.31e-07 | 72 |
monopoietic cell | 5.04e-07 | 59 |
monocyte | 5.04e-07 | 59 |
monoblast | 5.04e-07 | 59 |
promonocyte | 5.04e-07 | 59 |
hematopoietic lineage restricted progenitor cell | 6.96e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
neural tube | 7.79e-08 | 56 |
neural rod | 7.79e-08 | 56 |
future spinal cord | 7.79e-08 | 56 |
neural keel | 7.79e-08 | 56 |
adult organism | 9.46e-08 | 114 |
regional part of nervous system | 5.50e-07 | 53 |
regional part of brain | 5.50e-07 | 53 |
nervous system | 6.34e-07 | 89 |
central nervous system | 7.17e-07 | 81 |
regional part of forebrain | 9.54e-07 | 41 |
forebrain | 9.54e-07 | 41 |
anterior neural tube | 9.54e-07 | 41 |
future forebrain | 9.54e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.62e-17 | 235 |
disease of cellular proliferation | 1.26e-16 | 239 |
cell type cancer | 5.47e-09 | 143 |
hematologic cancer | 8.97e-09 | 51 |
immune system cancer | 8.97e-09 | 51 |
organ system cancer | 1.25e-08 | 137 |
leukemia | 3.10e-08 | 39 |
myeloid leukemia | 4.26e-07 | 31 |