FFCP PHASE1:Hg19::chr6:144651950..144651997,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr6:144651950..144651997,+ | |||
|coexpression_cluster_id=C4572 | |coexpression_cluster_id=C4572 | ||
|description=CAGE_peak_at_chr6:144651950..144651997,+ | |description=CAGE_peak_at_chr6:144651950..144651997,+ | ||
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|ontology_enrichment_celltype=CL:0002076!2.29e-15!43;CL:0000223!9.59e-11!59;CL:0000066!6.07e-09!254;CL:0002251!2.40e-07!21 | |ontology_enrichment_celltype=CL:0002076!2.29e-15!43;CL:0000223!9.59e-11!59;CL:0000066!6.07e-09!254;CL:0002251!2.40e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002322;2.79e-07;5 | |ontology_enrichment_celltype_v019=CL:0002322;2.79e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,2.34e-07,42;CL:0002322,3.38e-07,5 | |||
|ontology_enrichment_development_v019= | |ontology_enrichment_development_v019= | ||
|ontology_enrichment_disease=DOID:305!1.26e-09!106;DOID:1749!8.21e-08!14;DOID:299!1.48e-07!25 | |ontology_enrichment_disease=DOID:305!1.26e-09!106;DOID:1749!8.21e-08!14;DOID:299!1.48e-07!25 | ||
|ontology_enrichment_disease_v019=DOID:299;3.21e-09;25!DOID:5093;7.42e-08;4!DOID:1612;7.42e-08;4 | |ontology_enrichment_disease_v019=DOID:299;3.21e-09;25!DOID:5093;7.42e-08;4!DOID:1612;7.42e-08;4 | ||
|ontology_enrichment_disease_v019_2=DOID:305,1.54e-09,106;DOID:299,3.66e-09,25;DOID:5093,7.24e-08,4;DOID:1612,7.24e-08,4;DOID:0050687,8.21e-07,143 | |||
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|ontology_enrichment_uberon_v019=UBERON:0002294;6.19e-08;7!UBERON:0001173;6.19e-08;7!UBERON:0005631;6.98e-08;10!UBERON:0000158;6.98e-08;10!UBERON:0000058;1.11e-07;10!UBERON:0001044;2.04e-07;6!UBERON:0003293;2.04e-07;6!UBERON:0003294;2.04e-07;6!UBERON:0010047;2.04e-07;6!UBERON:0003408;2.04e-07;6!UBERON:0000167;2.04e-07;6 | |ontology_enrichment_uberon_v019=UBERON:0002294;6.19e-08;7!UBERON:0001173;6.19e-08;7!UBERON:0005631;6.98e-08;10!UBERON:0000158;6.98e-08;10!UBERON:0000058;1.11e-07;10!UBERON:0001044;2.04e-07;6!UBERON:0003293;2.04e-07;6!UBERON:0003294;2.04e-07;6!UBERON:0010047;2.04e-07;6!UBERON:0003408;2.04e-07;6!UBERON:0000167;2.04e-07;6 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.62e-11,160;UBERON:0000925,4.62e-11,160;UBERON:0006595,4.62e-11,160;UBERON:0001007,1.03e-09,145;UBERON:0001555,1.03e-09,145;UBERON:0007026,1.03e-09,145;UBERON:0001004,2.10e-09,74;UBERON:0005631,1.11e-08,14;UBERON:0000158,1.11e-08,14;UBERON:0004921,1.32e-08,118;UBERON:0005153,1.25e-07,37;UBERON:0001044,2.20e-07,6;UBERON:0003293,2.20e-07,6;UBERON:0003294,2.20e-07,6;UBERON:0010047,2.20e-07,6;UBERON:0000167,2.20e-07,6;UBERON:0000065,2.52e-07,54;UBERON:0000915,5.30e-07,52;UBERON:0005911,6.01e-07,82 | |||
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|short_description=p@chr6:144651950..144651997,+ | |short_description=p@chr6:144651950..144651997,+ | ||
}} | }} |
Latest revision as of 20:30, 30 July 2015
Short description: | p@chr6:144651950..144651997, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:144651950..144651997, + |
Coexpression cluster: | C4572_breast_lung_choriocarcinoma_thyroid_immature_throat_amniotic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 2.34e-07 | 42 |
embryonic stem cell | 3.38e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.62e-11 | 160 |
endoderm | 4.62e-11 | 160 |
presumptive endoderm | 4.62e-11 | 160 |
digestive system | 1.03e-09 | 145 |
digestive tract | 1.03e-09 | 145 |
primitive gut | 1.03e-09 | 145 |
respiratory system | 2.10e-09 | 74 |
extraembryonic membrane | 1.11e-08 | 14 |
membranous layer | 1.11e-08 | 14 |
subdivision of digestive tract | 1.32e-08 | 118 |
epithelial bud | 1.25e-07 | 37 |
saliva-secreting gland | 2.20e-07 | 6 |
gland of oral region | 2.20e-07 | 6 |
gland of foregut | 2.20e-07 | 6 |
oral gland | 2.20e-07 | 6 |
oral cavity | 2.20e-07 | 6 |
respiratory tract | 2.52e-07 | 54 |
thoracic segment of trunk | 5.30e-07 | 52 |
endo-epithelium | 6.01e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.54e-09 | 106 |
adenocarcinoma | 3.66e-09 | 25 |
thoracic cancer | 7.24e-08 | 4 |
breast cancer | 7.24e-08 | 4 |
cell type cancer | 8.21e-07 | 143 |