FF:1535-43I7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005870 | |||
|accession_numbers=CAGE;DRX009059;DRR009933;DRZ001358;DRZ002741;DRZ012708;DRZ014091 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000479,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!2.72!522.33!Rbpjl;;chr2:19367259..19367278,+!p1@Ptf1a!2.49!305.28!Ptf1a;;chr5:144951153..144951203,+!p1@Bhlha15!2.35!320.04!Bhlha15;;chr9:74709695..74709722,+!p1@Onecut1!1.78!59.03!Onecut1;;chr10:61595830..61595846,+!p1@Neurog3!1.62!40.89!Neurog3;;chr7:19608891..19608895,-!p1@Foxa3!1.59!49.19!Foxa3;;chr2:79296783..79296801,-!p1@Neurod1!1.54!33.82!Neurod1;;chr2:163332558..163332596,+!p2@Hnf4a!1.47!28.28!Hnf4a;;chr17:27865882..27865901,-!p1@Spdef!1.42!25.52!Spdef;;chr3:30039329..30039355,-!p5@Mecom!1.34!20.91!Mecom;;chr7:17647736..17647772,-!p1@Hif3a!1.33!70.71!Hif3a;;chr2:103143336..103143367,-!p1@Ehf!1.33!32.59!Ehf;;chr1:138857076..138857105,-!p1@Nr5a2!1.33!20.29!Nr5a2;;chr2:147871627..147871641,-!p1@Foxa2!1.28!18.14!Foxa2;;chr8:59799772..59799789,+!p1@Hand2!1.25!47.96!Hand2;;chr7:6649134..6649167,-!p1@Zim1!1.23!84.54!Zim1;;chr11:83664365..83664383,+!p1@Hnf1b!1.21!15.37!Hnf1b;;chr4:133109285..133109308,+!p1@Nr0b2!1.20!14.76!Nr0b2;;chrX:45245679..45245702,-!p1@Smarca1!1.16!59.64!Smarca1;;chr5:148081686..148081715,+!p1@Pdx1!1.11!11.99!Pdx1;;chr10:12810631..12810649,+!p1@Plagl1!1.09!298.83!Plagl1;;chr11:98605517..98605539,+!p5@Thra!1.09!16.29!Thra;;chr1:138857048..138857071,-!p2@Nr5a2!1.09!11.38!Nr5a2;;chr1:138857112..138857130,-!p7@Nr5a2!1.06!10.45!Nr5a2;;chr19:43686789..43686811,+!p1@Nkx2-3!1.06!10.45!Nkx2-3;;chr9:96620459..96620478,-!p9@Zbtb38!1.04!11.07!Zbtb38;;chr2:147019977..147019985,-!p2@Nkx2-2!1.02!9.53!Nkx2-2;;chr5:125538737..125538781,-!p2@Ncor2!1.01!33.82!Ncor2;;chr14:63890519..63890539,-!p3@Gata4!1.01!9.22!Gata4;;chr5:148081667..148081678,+!p3@Pdx1!0.98!8.61!Pdx1;;chr14:63864056..63864102,-!p1@Gata4!0.97!14.76!Gata4;;chr2:103143315..103143328,-!p2@Ehf!0.97!8.30!Ehf;;chr1:138846009..138846038,-!p3@Nr5a2!0.95!8.92!Nr5a2;;chr14:63890491..63890516,-!p2@Gata4!0.95!7.99!Gata4;;chr14:63890545..63890560,-!p5@Gata4!0.95!7.99!Gata4;;chr2:146047829..146047847,+!p1@Insm1!0.93!13.83!Insm1;;chr19:10315179..10315241,-!p1@Gm98!0.90!76.55!Gm98;;chr5:135582751..135582788,+!p1@Mlxipl!0.90!28.90!Mlxipl;;chr2:104966766..104966786,+!p1@Wt1!0.88!10.76!Wt1;;chr1:137155026..137155042,-!p1@Elf3!0.87!39.04!Elf3;;chr13:117099847..117099907,-!p1@Isl1!0.86!11.99!Isl1;;chr1:138846047..138846074,-!p5@Nr5a2!0.86!6.76!Nr5a2;;chr2:105509045..105509071,+!p1@Pax6!0.84!5.84!Pax6;;chr9:74714281..74714296,+!p5@Onecut1!0.84!5.84!Onecut1;;chr5:104121453..104121479,+!p4@Aff1!0.83!27.98!Aff1;;chr2:103264213..103264233,+!p1@Elf5!0.82!5.53!Elf5;;chr8:90328310..90328362,-!p3@Zfp423!0.79!6.15!Zfp423;;chr6:52154414..52154462,-!p1@Hoxa5!0.78!7.07!Hoxa5;;chr7:52471143..52471186,+!p1@Tead2!0.77!57.18!Tead2;;chr5:102094214..102094230,-!p1@Nkx6-1!0.77!4.92!Nkx6-1;;chr4:154010918..154010931,-!p1@Prdm16!0.76!15.06!Prdm16;;chr15:37162796..37162828,+!p1@Grhl2!0.76!8.30!Grhl2;;chr19:37509324..37509337,+!p1@Hhex!0.75!36.28!Hhex;;chr19:5560600..5560617,-!p1@Ovol1!0.75!5.84!Ovol1;;chr1:138846079..138846103,-!p6@Nr5a2!0.75!4.61!Nr5a2;;chr11:5420655..5420659,+!p3@Xbp1!0.75!4.61!Xbp1;;chr9:74714303..74714318,+!p2@Onecut1!0.75!4.61!Onecut1;;chr10:22539932..22539956,-!p1@Tcf21!0.74!12.91!Tcf21;;chr2:115888250..115888298,-!p10@Meis2!0.73!5.53!Meis2;;chr6:90412582..90412601,+!p1@Klf15!0.72!22.14!Klf15;;chr5:148081722..148081744,+!p2@Pdx1!0.72!4.30!Pdx1;;chr10:88969376..88969395,-!p1@Nr1h4!0.72!4.30!Nr1h4;;chr14:63890459..63890484,-!p4@Gata4!0.72!4.30!Gata4;;chr7:52472041..52472065,+!p2@Tead2!0.71!4.92!Tead2;;chr11:5420954..5420969,+!p2@Xbp1!0.70!57.18!Xbp1;;chr15:35225845..35225867,+!p1@Osr2!0.70!11.07!Osr2;;chr19:28754692..28754757,-!p1@Glis3!0.68!17.83!Glis3;;chr18:11052485..11052508,+!p2@Gata6!0.68!11.99!Gata6;;chr13:48758276..48758291,+!p1@Barx1!0.67!3.69!Barx1;;chr14:63890660..63890687,-!p7@Gata4!0.67!3.69!Gata4;;chr9:74709682..74709691,+!p3@Onecut1!0.67!3.69!Onecut1;;chr1:6720216..6720232,+!p1@St18!0.67!3.69!St18;;chr1:138845748..138845766,-!p4@Nr5a2!0.66!4.92!Nr5a2;;chr12:37835141..37835194,+!p1@Meox2!0.65!12.30!Meox2;;chr12:9581262..9581282,+!p1@Osr1!0.64!47.65!Osr1;;chr6:90412608..90412630,+!p2@Klf15!0.64!7.69!Klf15;;chr2:147872790..147872821,-!p2@Foxa2!0.64!3.38!Foxa2;;chr2:104966933..104966966,+!p3@Wt1!0.64!3.38!Wt1;;chr2:147012125..147012149,-!p1@Nkx2-2!0.64!3.38!Nkx2-2;;chr18:11052606..11052633,+!p4@Gata6!0.63!9.22!Gata6;;chr11:96180045..96180059,+!p1@Hoxb4!0.63!4.92!Hoxb4;;chr10:51397572..51397595,+!p1@Rfx6!0.61!3.07!Rfx6;;chr2:147871948..147871977,-!p3@Foxa2!0.61!3.07!Foxa2;;chr12:30213247..30213333,+!p1@Myt1l!0.61!3.07!Myt1l;;chr15:75578748..75578752,-!p1@Mafa!0.61!3.07!Mafa;;chr9:74709664..74709671,+!p6@Onecut1!0.61!3.07!Onecut1;;chr1:191994550..191994623,-!p1@Prox1!0.60!24.59!Prox1;;chr6:72849280..72849297,-!p6@Kcmf1!0.60!6.46!Kcmf1;;chr4:135129538..135129558,-!p1@Grhl3!0.60!4.92!Grhl3;;chr3:30408384..30408431,-!p4@Mecom!0.60!4.00!Mecom;;chr18:80904854..80904919,-!p2@Nfatc1!0.59!41.50!Nfatc1;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.59!33.82!Zfp706;;chr11:121380594..1213806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004540..25004562,-!p3@Mll3!0.33!9.22!Mll3;;chr3:89197057..89197114,-!p1@Zbtb7b!0.33!5.84!Zbtb7b;;chr8:87225670..87225697,+!p2@Lyl1!0.33!4.92!Lyl1;;chr17:3557718..3557733,-!p2@Tfb1m!0.33!4.61!Tfb1m;;chr13:44825008..44825066,+!p5@Jarid2!0.33!3.07!Jarid2;;chr12:9581317..9581333,+!p3@Osr1!0.33!2.15!Osr1;;chr14:17407549..17407575,-!p3@Rarb!0.33!2.15!Rarb;;chr2:74542918..74542971,+!p1@Hoxd8!0.33!2.15!Hoxd8;;chr2:115890294..115890334,-!p9@Meis2!0.33!1.84!Meis2;;chr10:119914001..119914078,-!p4@Hmga2!0.33!1.84!Hmga2;;chr11:11590140..11590187,+!p3@Ikzf1!0.33!1.54!Ikzf1;;chr15:37162834..37162849,+!p2@Grhl2!0.33!1.54!Grhl2;;chr12:37835203..37835218,+!p3@Meox2!0.33!1.54!Meox2;;chr7:89137163..89137200,-!p1@Bnc1!0.33!1.54!Bnc1;;chr1:165243272..165243283,-!p6@Prrx1!0.33!1.54!Prrx1;;chr6:72849716..72849805,-!p1@Kcmf1!0.32!23.06!Kcmf1;;chr4:129055091..129055168,-!p1@Zbtb8a!0.32!10.45!Zbtb8a;;chr11:74981654..74981658,-!p1@Hic1!0.32!6.76!Hic1;;chr6:14851287..14851342,+!p1@Foxp2!0.32!5.53!Foxp2;;chr1:93698030..93698064,+!p1@Twist2!0.32!3.07!Twist2;;chr18:69681483..69681514,+!p11@Tcf4!0.32!2.46!Tcf4;;chr13:72101161..72101177,-!p2@Irx1!0.32!1.84!Irx1;;chr4:82151500..82151505,-!p11@Nfib!0.32!1.54!Nfib;;chr1:170361678..170361689,-!p13@Pbx1!0.32!1.54!Pbx1;;chr7:148513456..148513506,-!p1@Deaf1!0.31!28.28!Deaf1;;chr19:38893646..38893732,-!p1@Noc3l!0.31!19.37!Noc3l;;chr19:26822880..26822964,+!p2@Smarca2!0.31!15.06!Smarca2;;chr18:3281034..3281104,-!p1@Crem!0.31!12.60!Crem;;chr7:134169741..134169760,-!p10@Maz!0.31!4.92!Maz;;chr6:115310872..115310899,+!p2@Pparg!0.31!2.46!Pparg;;chr11:70043257..70043263,-!p1@Bcl6b!0.31!2.46!Bcl6b;;chr10:107769229..107769238,+!p3@Pawr!0.31!1.84!Pawr;;chr16:95680889..95680991,-!p1@Erg!0.30!14.14!Erg;;chr1:193961776..193961815,-!p2@Rcor3!0.30!8.92!Rcor3;;chr18:5334362..5334408,-!p1@Zfp438!0.30!7.07!Zfp438;;chr14:65977427..65977452,+!p4@Zfp395!0.30!3.69!Zfp395;;chr11:85646341..85646352,+!p3@Tbx2!0.30!2.77!Tbx2;;chr5:31262699..31262712,-!p2@Preb!0.30!2.15!Preb;;chr3:30408674..30408716,-!p2@Mecom!0.30!2.15!Mecom;;chr13:67433434..67433446,-!p3@Zfp595!0.30!1.54!Zfp595;;chr1:69732511..69732540,-!p2@Ikzf2!0.30!1.54!Ikzf2;;chr15:102865131..102865151,+!p2@Hoxc4!0.30!1.23!Hoxc4;;chr4:82151653..82151706,-!p2@Nfib!0.29!49.19!Nfib;;chr9:30838206..30838285,+!p2@Zbtb44!0.29!22.44!Zbtb44;;chr9:22112085..22112138,-!p1@Zfp810!0.29!21.52!Zfp810;;chr10:114821807..114821852,-!p2@Thap2!0.29!11.38!Thap2;;chr1:120949949..120950000,-!p1@Gli2!0.29!7.07!Gli2;;chr19:5637501..5637517,+!p4@Rela!0.29!6.46!Rela;;chrX:35543006..35543019,+!p2@Zbtb33!0.29!4.00!Zbtb33;;chr11:44430788..44430804,+!p3@Ebf1!0.29!3.69!Ebf1;;chr4:148178529..148178548,+!p3@Casz1!0.29!3.38!Casz1;;chrX:45947787..45947812,-!p3@Zfp280c!0.29!2.77!Zfp280c;;chr6:146744563..146744594,+!p1@Arntl2!0.29!2.46!Arntl2;;chr15:81633139..81633152,+!p4@Tef!0.29!2.15!Tef;;chr2:115890953..115890974,-!p6@Meis2!0.29!1.84!Meis2;;chr1:4486481..4486501,-!p2@Sox17!0.29!1.84!Sox17;;chr11:85646469..85646488,+!p5@Tbx2!0.29!1.84!Tbx2;;chr1:179372411..179372509,+!p1@Zfp238!0.28!21.21!Zfp238;;chr4:122911086..122911112,+!p1@Heyl!0.28!19.68!Heyl;;chr16:87699237..87699279,+!p1@Bach1!0.28!17.22!Bach1;;chr2:169458192..169458247,+!p1@Tshz2!0.28!14.76!Tshz2;;chr4:97444012..97444045,+!p4@Nfia!0.28!12.30!Nfia;;chr17:28314341..28314394,+!p2@Zfp523!0.28!9.22!Zfp523;;chr5:104121391..104121450,+!p3@Aff1!0.28!8.30!Aff1;;chr16:14705961..14705978,+!p2@Snai2!0.28!7.38!Snai2;;chr17:34169293..34169320,+!p3@Rxrb!0.28!4.61!Rxrb;;chr19:10315252..10315266,-!p2@Gm98!0.28!1.84!Gm98;;chr3:5218546..5218561,+!p4@Zfhx4!0.28!1.84!Zfhx4;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.28!1.84!Mesp2;;chr1:179372625..179372654,+!p4@Zfp238!0.28!1.84!Zfp238;;chr11:96153767..96153822,+!p1@Hoxb6!0.28!1.84!Hoxb6;;chr10:86956396..86956411,-!p1@Ascl1!0.28!1.84!Ascl1;;chr11:18918406..18918431,-!p6@Meis1!0.28!1.54!Meis1;;chr1:93698068..93698085,+!p2@Twist2!0.28!1.23!Twist2;;chr1:194979383..194979393,+!p3@Irf6!0.28!0.92!Irf6;;chr2:104966465..104966479,+!p6@Wt1!0.28!0.92!Wt1;;chr2:105515635..105515661,+!p5@Pax6!0.28!0.92!Pax6;;chr19:55972767..55972779,+!p20@Tcf7l2!0.28!0.92!Tcf7l2;;chr2:105003277..105003280,+!p5@Wt1!0.28!0.92!Wt1;;chr2:147012101..147012118,-!p3@Nkx2-2!0.28!0.92!Nkx2-2;;chr2:104966909..104966920,+!p8@Wt1!0.28!0.92!Wt1;;chr2:181498020..181498040,+!p5@Myt1!0.28!0.92!Myt1;;chr5:102094266..102094273,-!p3@Nkx6-1!0.28!0.92!Nkx6-1;;chr2:90936867..90936874,+!p7@Sfpi1!0.28!0.92!Sfpi1;;chr2:74543397..74543435,+!p2@Hoxd8!0.28!0.92!Hoxd8;;chr2:74550015..74550057,+!p2@Hoxd3!0.28!0.92!Hoxd3;;chr18:11052516..11052525,+!p5@Gata6!0.28!0.92!Gata6;;chr16:38294860..38294924,-!p1@Nr1i2!0.28!0.92!Nr1i2;;chr12:39510206..39510249,+!p3@Etv1!0.28!0.92!Etv1;;chr15:35225873..35225889,+!p2@Osr2!0.28!0.92!Osr2;;chr12:30219426..30219506,+!p2@Myt1l!0.28!0.92!Myt1l;;chr5:115421126..115421137,-!p4@Hnf1a!0.28!0.92!Hnf1a;;chr5:115420882..115420896,-!p3@Hnf1a!0.28!0.92!Hnf1a;;chr7:122989594..122989626,-!p1@Sox6!0.28!0.92!Sox6;;chr10:12844757..12844771,+!p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| |expression_enrichment_score=chr2:164228702..164228719,+!p1@Rbpjl!2.72!522.33!Rbpjl;;chr2:19367259..19367278,+!p1@Ptf1a!2.49!305.28!Ptf1a;;chr5:144951153..144951203,+!p1@Bhlha15!2.35!320.04!Bhlha15;;chr9:74709695..74709722,+!p1@Onecut1!1.78!59.03!Onecut1;;chr10:61595830..61595846,+!p1@Neurog3!1.62!40.89!Neurog3;;chr7:19608891..19608895,-!p1@Foxa3!1.59!49.19!Foxa3;;chr2:79296783..79296801,-!p1@Neurod1!1.54!33.82!Neurod1;;chr2:163332558..163332596,+!p2@Hnf4a!1.47!28.28!Hnf4a;;chr17:27865882..27865901,-!p1@Spdef!1.42!25.52!Spdef;;chr3:30039329..30039355,-!p5@Mecom!1.34!20.91!Mecom;;chr7:17647736..17647772,-!p1@Hif3a!1.33!70.71!Hif3a;;chr2:103143336..103143367,-!p1@Ehf!1.33!32.59!Ehf;;chr1:138857076..138857105,-!p1@Nr5a2!1.33!20.29!Nr5a2;;chr2:147871627..147871641,-!p1@Foxa2!1.28!18.14!Foxa2;;chr8:59799772..59799789,+!p1@Hand2!1.25!47.96!Hand2;;chr7:6649134..6649167,-!p1@Zim1!1.23!84.54!Zim1;;chr11:83664365..83664383,+!p1@Hnf1b!1.21!15.37!Hnf1b;;chr4:133109285..133109308,+!p1@Nr0b2!1.20!14.76!Nr0b2;;chrX:45245679..45245702,-!p1@Smarca1!1.16!59.64!Smarca1;;chr5:148081686..148081715,+!p1@Pdx1!1.11!11.99!Pdx1;;chr10:12810631..12810649,+!p1@Plagl1!1.09!298.83!Plagl1;;chr11:98605517..98605539,+!p5@Thra!1.09!16.29!Thra;;chr1:138857048..138857071,-!p2@Nr5a2!1.09!11.38!Nr5a2;;chr1:138857112..138857130,-!p7@Nr5a2!1.06!10.45!Nr5a2;;chr19:43686789..43686811,+!p1@Nkx2-3!1.06!10.45!Nkx2-3;;chr9:96620459..96620478,-!p9@Zbtb38!1.04!11.07!Zbtb38;;chr2:147019977..147019985,-!p2@Nkx2-2!1.02!9.53!Nkx2-2;;chr5:125538737..125538781,-!p2@Ncor2!1.01!33.82!Ncor2;;chr14:63890519..63890539,-!p3@Gata4!1.01!9.22!Gata4;;chr5:148081667..148081678,+!p3@Pdx1!0.98!8.61!Pdx1;;chr14:63864056..63864102,-!p1@Gata4!0.97!14.76!Gata4;;chr2:103143315..103143328,-!p2@Ehf!0.97!8.30!Ehf;;chr1:138846009..138846038,-!p3@Nr5a2!0.95!8.92!Nr5a2;;chr14:63890491..63890516,-!p2@Gata4!0.95!7.99!Gata4;;chr14:63890545..63890560,-!p5@Gata4!0.95!7.99!Gata4;;chr2:146047829..146047847,+!p1@Insm1!0.93!13.83!Insm1;;chr19:10315179..10315241,-!p1@Gm98!0.90!76.55!Gm98;;chr5:135582751..135582788,+!p1@Mlxipl!0.90!28.90!Mlxipl;;chr2:104966766..104966786,+!p1@Wt1!0.88!10.76!Wt1;;chr1:137155026..137155042,-!p1@Elf3!0.87!39.04!Elf3;;chr13:117099847..117099907,-!p1@Isl1!0.86!11.99!Isl1;;chr1:138846047..138846074,-!p5@Nr5a2!0.86!6.76!Nr5a2;;chr2:105509045..105509071,+!p1@Pax6!0.84!5.84!Pax6;;chr9:74714281..74714296,+!p5@Onecut1!0.84!5.84!Onecut1;;chr5:104121453..104121479,+!p4@Aff1!0.83!27.98!Aff1;;chr2:103264213..103264233,+!p1@Elf5!0.82!5.53!Elf5;;chr8:90328310..90328362,-!p3@Zfp423!0.79!6.15!Zfp423;;chr6:52154414..52154462,-!p1@Hoxa5!0.78!7.07!Hoxa5;;chr7:52471143..52471186,+!p1@Tead2!0.77!57.18!Tead2;;chr5:102094214..102094230,-!p1@Nkx6-1!0.77!4.92!Nkx6-1;;chr4:154010918..154010931,-!p1@Prdm16!0.76!15.06!Prdm16;;chr15:37162796..37162828,+!p1@Grhl2!0.76!8.30!Grhl2;;chr19:37509324..37509337,+!p1@Hhex!0.75!36.28!Hhex;;chr19:5560600..5560617,-!p1@Ovol1!0.75!5.84!Ovol1;;chr1:138846079..138846103,-!p6@Nr5a2!0.75!4.61!Nr5a2;;chr11:5420655..5420659,+!p3@Xbp1!0.75!4.61!Xbp1;;chr9:74714303..74714318,+!p2@Onecut1!0.75!4.61!Onecut1;;chr10:22539932..22539956,-!p1@Tcf21!0.74!12.91!Tcf21;;chr2:115888250..115888298,-!p10@Meis2!0.73!5.53!Meis2;;chr6:90412582..90412601,+!p1@Klf15!0.72!22.14!Klf15;;chr5:148081722..148081744,+!p2@Pdx1!0.72!4.30!Pdx1;;chr10:88969376..88969395,-!p1@Nr1h4!0.72!4.30!Nr1h4;;chr14:63890459..63890484,-!p4@Gata4!0.72!4.30!Gata4;;chr7:52472041..52472065,+!p2@Tead2!0.71!4.92!Tead2;;chr11:5420954..5420969,+!p2@Xbp1!0.70!57.18!Xbp1;;chr15:35225845..35225867,+!p1@Osr2!0.70!11.07!Osr2;;chr19:28754692..28754757,-!p1@Glis3!0.68!17.83!Glis3;;chr18:11052485..11052508,+!p2@Gata6!0.68!11.99!Gata6;;chr13:48758276..48758291,+!p1@Barx1!0.67!3.69!Barx1;;chr14:63890660..63890687,-!p7@Gata4!0.67!3.69!Gata4;;chr9:74709682..74709691,+!p3@Onecut1!0.67!3.69!Onecut1;;chr1:6720216..6720232,+!p1@St18!0.67!3.69!St18;;chr1:138845748..138845766,-!p4@Nr5a2!0.66!4.92!Nr5a2;;chr12:37835141..37835194,+!p1@Meox2!0.65!12.30!Meox2;;chr12:9581262..9581282,+!p1@Osr1!0.64!47.65!Osr1;;chr6:90412608..90412630,+!p2@Klf15!0.64!7.69!Klf15;;chr2:147872790..147872821,-!p2@Foxa2!0.64!3.38!Foxa2;;chr2:104966933..104966966,+!p3@Wt1!0.64!3.38!Wt1;;chr2:147012125..147012149,-!p1@Nkx2-2!0.64!3.38!Nkx2-2;;chr18:11052606..11052633,+!p4@Gata6!0.63!9.22!Gata6;;chr11:96180045..96180059,+!p1@Hoxb4!0.63!4.92!Hoxb4;;chr10:51397572..51397595,+!p1@Rfx6!0.61!3.07!Rfx6;;chr2:147871948..147871977,-!p3@Foxa2!0.61!3.07!Foxa2;;chr12:30213247..30213333,+!p1@Myt1l!0.61!3.07!Myt1l;;chr15:75578748..75578752,-!p1@Mafa!0.61!3.07!Mafa;;chr9:74709664..74709671,+!p6@Onecut1!0.61!3.07!Onecut1;;chr1:191994550..191994623,-!p1@Prox1!0.60!24.59!Prox1;;chr6:72849280..72849297,-!p6@Kcmf1!0.60!6.46!Kcmf1;;chr4:135129538..135129558,-!p1@Grhl3!0.60!4.92!Grhl3;;chr3:30408384..30408431,-!p4@Mecom!0.60!4.00!Mecom;;chr18:80904854..80904919,-!p2@Nfatc1!0.59!41.50!Nfatc1;;chr15:36937113..36937127,-!p3@Gm10193,p3@Zfp706!0.59!33.82!Zfp706;;chr11:121380594..121380609,-!p2@Zfp750!0.59!5.53!Zfp750;;chr13:72766250..72766273,+!p1@Irx2!0.59!4.92!Irx2;;chr18:11052456..11052477,+!p3@Gata6!0.58!10.15!Gata6;;chr7:17642053..17642066,-!p2@Hif3a!0.58!4.30!Hif3a;;chrX:90531838..90531861,+!p1@Arx!0.58!3.69!Arx;;chr11:96164821..96164865,+!p1@Hoxb5!0.58!2.77!Hoxb5;;chr2:104966874..104966907,+!p2@Wt1!0.58!2.77!Wt1;;chr6:30908793..30908815,-!p1@Klf14!0.58!2.77!Klf14;;chr14:63890691..63890718,-!p8@Gata4!0.58!2.77!Gata4;;chr2:168415815..168415872,-!p1@Nfatc2!0.57!18.14!Nfatc2;;chr4:154010409..154010466,-!p2@Prdm16!0.57!7.38!Prdm16;;chr3:128916868..128916890,+!p1@Pitx2!0.57!4.00!Pitx2;;chr7:6683123..6683142,-!p1@Peg3!0.56!173.70!Peg3;;chr14:65977498..65977528,+!p1@Zfp395!0.56!21.83!Zfp395;;chr4:84320893..84320910,-!p1@Bnc2!0.56!6.76!Bnc2;;chr11:5420973..5420992,+!p1@Xbp1!0.55!344.02!Xbp1;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.55!98.38!Zfp706;;chr15:78994907..78994926,-!p1@Sox10!0.55!7.69!Sox10;;chr2:169458799..169458832,+!p5@Tshz2!0.55!4.61!Tshz2;;chr6:118429255..118429336,-!p1@Zfp9!0.54!50.42!Zfp9;;chr18:11052642..11052659,+!p1@Gata6!0.54!15.37!Gata6;;chr4:154010882..154010889,-!p10@Prdm16!0.54!2.46!Prdm16;;chr4:13678723..13678739,+!p10@Runx1t1!0.54!2.46!Runx1t1;;chr5:144951136..144951139,+!p2@Bhlha15!0.54!2.46!Bhlha15;;chr2:105515793..105515808,+!p3@Pax6!0.54!2.46!Pax6;;chr14:79915425..79915501,+!p1@Elf1!0.53!27.05!Elf1;;chr18:7004715..7004731,-!p1@Mkx!0.53!6.76!Mkx;;chr14:67853425..67853454,+!p1@Ebf2!0.53!3.69!Ebf2;;chr14:67853457..67853482,+!p2@Ebf2!0.53!3.69!Ebf2;;chr18:74375772..74375799,+!p2@Cxxc1!0.52!8.30!Cxxc1;;chr7:17642018..17642045,-!p4@Hif3a!0.52!2.77!Hif3a;;chr2:91864661..91864686,-!p1@Creb3l1!0.51!63.33!Creb3l1;;chr7:148513409..148513455,-!p2@Deaf1!0.51!13.22!Deaf1;;chr11:18918820..18918831,-!p4@Meis1!0.51!4.92!Meis1;;chr8:123608252..123608268,+!p1@Foxf1a!0.51!3.69!Foxf1a;;chr10:126778916..126778974,-!p1@Gli1!0.50!5.84!Gli1;;chr12:9581284..9581303,+!p2@Osr1!0.50!4.92!Osr1;;chr7:108966820..108966835,+!p1@Phox2a!0.50!2.15!Phox2a;;chr5:29805118..29805137,-!p1@Mnx1!0.50!2.15!Mnx1;;chr1:6724908..6724955,+!p2@St18!0.50!2.15!St18;;chrX:108009761..108009788,+!p1@Pou3f4!0.50!2.15!Pou3f4;;chr16:43235969..43235989,+!p20@Zbtb20!0.50!2.15!Zbtb20;;chr3:3508024..3508069,+!p2@Hnf4g!0.50!2.15!Hnf4g;;chr4:148275237..148275311,+!p2@Casz1!0.49!11.07!Casz1;;chr2:169458519..169458555,+!p2@Tshz2!0.49!10.76!Tshz2;;chr1:186556323..186556370,-!p2@Hlx!0.49!7.07!Hlx;;chr11:121380640..121380655,-!p1@Zfp750!0.49!4.00!Zfp750;;chr11:112643496..112643562,+!p1@Sox9!0.48!102.38!Sox9;;chr1:172797892..172797915,-!p1@Atf6!0.48!77.17!Atf6;;chr14:22807083..22807104,-!p1@Zfp503!0.48!47.96!Zfp503;;chr3:94176733..94176794,+!p1@Rorc!0.48!20.60!Rorc;;chr1:165243792..165243808,-!p1@Prrx1!0.48!8.92!Prrx1;;chrX:45245644..45245666,-!p2@Smarca1!0.48!8.30!Smarca1;;chr2:56976543..56976558,-!p2@Nr4a2!0.48!5.53!Nr4a2;;chr11:96145450..96145517,+!p2@Hoxb7!0.48!3.38!Hoxb7;;chr6:52154386..52154407,-!p2@Hoxa5!0.48!2.77!Hoxa5;;chr8:124806048..124806094,+!p1@Zfpm1!0.47!24.29!Zfpm1;;chr15:81633165..81633188,+!p2@Tef!0.47!21.52!Tef;;chr2:91864300..91864379,-!p2@Creb3l1!0.47!7.07!Creb3l1;;chr7:144506077..144506128,-!p1@Ebf3!0.47!5.53!Ebf3;;chr6:90412556..90412581,+!p3@Klf15!0.47!5.23!Klf15;;chr4:154010940..154010962,-!p3@Prdm16!0.47!5.23!Prdm16;;chr2:91864449..91864492,-!p3@Creb3l1!0.47!3.69!Creb3l1;;chr6:52114821..52114828,-!p1@Hoxa2!0.47!3.38!Hoxa2;;chr2:180069370..180069409,-!p1@Gata5!0.47!2.46!Gata5;;chr7:19946556..19946611,+!p1@Ppp1r13l!0.46!9.84!Ppp1r13l;;chr2:115891409..115891425,-!p2@Meis2!0.46!7.07!Meis2;;chr14:56443806..56443848,+!p1@Nfatc4!0.46!4.61!Nfatc4;;chr2:77654936..77654988,-!p4@Zfp385b!0.46!2.46!Zfp385b;;chr1:194979315..194979359,+!p1@Irf6!0.45!15.06!Irf6;;chr4:43575544..43575565,+!p2@Creb3!0.45!14.45!Creb3;;chr19:28754600..28754612,-!p2@Glis3!0.45!3.38!Glis3;;chr6:15135639..15135655,+!p9@Foxp2!0.45!2.46!Foxp2;;chr5:42155788..42155800,-!p1@Nkx3-2!0.45!1.84!Nkx3-2;;chr19:45225149..45225186,+!p1@Tlx1!0.45!1.84!Tlx1;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!0.45!1.84!Ppard;;chr11:57645506..57645523,-!p1@Hand1!0.45!1.84!Hand1;;chr10:77506405..77506441,-!p1@Aire!0.45!1.84!Aire;;chr11:83664334..83664353,+!p2@Hnf1b!0.45!1.84!Hnf1b;;chr13:48758358..48758415,+!p2@Barx1!0.45!1.84!Barx1;;chr9:55388997..55389016,+!p1@Isl2!0.45!1.84!Isl2;;chr10:107769168..107769215,+!p1@Pawr!0.44!24.90!Pawr;;chr10:114821444..114821491,-!p1@Thap2!0.44!19.37!Thap2;;chr16:4594740..4594759,+!p1@Glis2!0.43!27.67!Glis2;;chr10:119913310..119913366,-!p1@Hmga2!0.43!18.45!Hmga2;;chrX:45807329..45807370,-!p1@Elf4!0.43!16.60!Elf4;;chr1:193007123..193007139,-!p1@Atf3!0.43!13.22!Atf3;;chr2:115891454..115891471,-!p3@Meis2!0.43!6.76!Meis2;;chr6:51382677..51382783,+!p1@Nfe2l3!0.43!5.53!Nfe2l3;;chr18:69681439..69681456,+!p7@Tcf4!0.43!5.53!Tcf4;;chr4:58956447..58956510,+!p1@Zkscan16!0.43!4.61!Zkscan16;;chr11:101755669..101755686,-!p1@Meox1!0.43!3.69!Meox1;;chr9:96619968..96619983,-!p6@Zbtb38!0.43!3.38!Zbtb38;;chr12:37835120..37835133,+!p2@M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004540..25004562,-!p3@Mll3!0.33!9.22!Mll3;;chr3:89197057..89197114,-!p1@Zbtb7b!0.33!5.84!Zbtb7b;;chr8:87225670..87225697,+!p2@Lyl1!0.33!4.92!Lyl1;;chr17:3557718..3557733,-!p2@Tfb1m!0.33!4.61!Tfb1m;;chr13:44825008..44825066,+!p5@Jarid2!0.33!3.07!Jarid2;;chr12:9581317..9581333,+!p3@Osr1!0.33!2.15!Osr1;;chr14:17407549..17407575,-!p3@Rarb!0.33!2.15!Rarb;;chr2:74542918..74542971,+!p1@Hoxd8!0.33!2.15!Hoxd8;;chr2:115890294..115890334,-!p9@Meis2!0.33!1.84!Meis2;;chr10:119914001..119914078,-!p4@Hmga2!0.33!1.84!Hmga2;;chr11:11590140..11590187,+!p3@Ikzf1!0.33!1.54!Ikzf1;;chr15:37162834..37162849,+!p2@Grhl2!0.33!1.54!Grhl2;;chr12:37835203..37835218,+!p3@Meox2!0.33!1.54!Meox2;;chr7:89137163..89137200,-!p1@Bnc1!0.33!1.54!Bnc1;;chr1:165243272..165243283,-!p6@Prrx1!0.33!1.54!Prrx1;;chr6:72849716..72849805,-!p1@Kcmf1!0.32!23.06!Kcmf1;;chr4:129055091..129055168,-!p1@Zbtb8a!0.32!10.45!Zbtb8a;;chr11:74981654..74981658,-!p1@Hic1!0.32!6.76!Hic1;;chr6:14851287..14851342,+!p1@Foxp2!0.32!5.53!Foxp2;;chr1:93698030..93698064,+!p1@Twist2!0.32!3.07!Twist2;;chr18:69681483..69681514,+!p11@Tcf4!0.32!2.46!Tcf4;;chr13:72101161..72101177,-!p2@Irx1!0.32!1.84!Irx1;;chr4:82151500..82151505,-!p11@Nfib!0.32!1.54!Nfib;;chr1:170361678..170361689,-!p13@Pbx1!0.32!1.54!Pbx1;;chr7:148513456..148513506,-!p1@Deaf1!0.31!28.28!Deaf1;;chr19:38893646..38893732,-!p1@Noc3l!0.31!19.37!Noc3l;;chr19:26822880..26822964,+!p2@Smarca2!0.31!15.06!Smarca2;;chr18:3281034..3281104,-!p1@Crem!0.31!12.60!Crem;;chr7:134169741..134169760,-!p10@Maz!0.31!4.92!Maz;;chr6:115310872..115310899,+!p2@Pparg!0.31!2.46!Pparg;;chr11:70043257..70043263,-!p1@Bcl6b!0.31!2.46!Bcl6b;;chr10:107769229..107769238,+!p3@Pawr!0.31!1.84!Pawr;;chr16:95680889..95680991,-!p1@Erg!0.30!14.14!Erg;;chr1:193961776..193961815,-!p2@Rcor3!0.30!8.92!Rcor3;;chr18:5334362..5334408,-!p1@Zfp438!0.30!7.07!Zfp438;;chr14:65977427..65977452,+!p4@Zfp395!0.30!3.69!Zfp395;;chr11:85646341..85646352,+!p3@Tbx2!0.30!2.77!Tbx2;;chr5:31262699..31262712,-!p2@Preb!0.30!2.15!Preb;;chr3:30408674..30408716,-!p2@Mecom!0.30!2.15!Mecom;;chr13:67433434..67433446,-!p3@Zfp595!0.30!1.54!Zfp595;;chr1:69732511..69732540,-!p2@Ikzf2!0.30!1.54!Ikzf2;;chr15:102865131..102865151,+!p2@Hoxc4!0.30!1.23!Hoxc4;;chr4:82151653..82151706,-!p2@Nfib!0.29!49.19!Nfib;;chr9:30838206..30838285,+!p2@Zbtb44!0.29!22.44!Zbtb44;;chr9:22112085..22112138,-!p1@Zfp810!0.29!21.52!Zfp810;;chr10:114821807..114821852,-!p2@Thap2!0.29!11.38!Thap2;;chr1:120949949..120950000,-!p1@Gli2!0.29!7.07!Gli2;;chr19:5637501..5637517,+!p4@Rela!0.29!6.46!Rela;;chrX:35543006..35543019,+!p2@Zbtb33!0.29!4.00!Zbtb33;;chr11:44430788..44430804,+!p3@Ebf1!0.29!3.69!Ebf1;;chr4:148178529..148178548,+!p3@Casz1!0.29!3.38!Casz1;;chrX:45947787..45947812,-!p3@Zfp280c!0.29!2.77!Zfp280c;;chr6:146744563..146744594,+!p1@Arntl2!0.29!2.46!Arntl2;;chr15:81633139..81633152,+!p4@Tef!0.29!2.15!Tef;;chr2:115890953..115890974,-!p6@Meis2!0.29!1.84!Meis2;;chr1:4486481..4486501,-!p2@Sox17!0.29!1.84!Sox17;;chr11:85646469..85646488,+!p5@Tbx2!0.29!1.84!Tbx2;;chr1:179372411..179372509,+!p1@Zfp238!0.28!21.21!Zfp238;;chr4:122911086..122911112,+!p1@Heyl!0.28!19.68!Heyl;;chr16:87699237..87699279,+!p1@Bach1!0.28!17.22!Bach1;;chr2:169458192..169458247,+!p1@Tshz2!0.28!14.76!Tshz2;;chr4:97444012..97444045,+!p4@Nfia!0.28!12.30!Nfia;;chr17:28314341..28314394,+!p2@Zfp523!0.28!9.22!Zfp523;;chr5:104121391..104121450,+!p3@Aff1!0.28!8.30!Aff1;;chr16:14705961..14705978,+!p2@Snai2!0.28!7.38!Snai2;;chr17:34169293..34169320,+!p3@Rxrb!0.28!4.61!Rxrb;;chr19:10315252..10315266,-!p2@Gm98!0.28!1.84!Gm98;;chr3:5218546..5218561,+!p4@Zfhx4!0.28!1.84!Zfhx4;;chr7:86956107..86956152,+!p@chr7:86956107..86956152,+!0.28!1.84!Mesp2;;chr1:179372625..179372654,+!p4@Zfp238!0.28!1.84!Zfp238;;chr11:96153767..96153822,+!p1@Hoxb6!0.28!1.84!Hoxb6;;chr10:86956396..86956411,-!p1@Ascl1!0.28!1.84!Ascl1;;chr11:18918406..18918431,-!p6@Meis1!0.28!1.54!Meis1;;chr1:93698068..93698085,+!p2@Twist2!0.28!1.23!Twist2;;chr1:194979383..194979393,+!p3@Irf6!0.28!0.92!Irf6;;chr2:104966465..104966479,+!p6@Wt1!0.28!0.92!Wt1;;chr2:105515635..105515661,+!p5@Pax6!0.28!0.92!Pax6;;chr19:55972767..55972779,+!p20@Tcf7l2!0.28!0.92!Tcf7l2;;chr2:105003277..105003280,+!p5@Wt1!0.28!0.92!Wt1;;chr2:147012101..147012118,-!p3@Nkx2-2!0.28!0.92!Nkx2-2;;chr2:104966909..104966920,+!p8@Wt1!0.28!0.92!Wt1;;chr2:181498020..181498040,+!p5@Myt1!0.28!0.92!Myt1;;chr5:102094266..102094273,-!p3@Nkx6-1!0.28!0.92!Nkx6-1;;chr2:90936867..90936874,+!p7@Sfpi1!0.28!0.92!Sfpi1;;chr2:74543397..74543435,+!p2@Hoxd8!0.28!0.92!Hoxd8;;chr2:74550015..74550057,+!p2@Hoxd3!0.28!0.92!Hoxd3;;chr18:11052516..11052525,+!p5@Gata6!0.28!0.92!Gata6;;chr16:38294860..38294924,-!p1@Nr1i2!0.28!0.92!Nr1i2;;chr12:39510206..39510249,+!p3@Etv1!0.28!0.92!Etv1;;chr15:35225873..35225889,+!p2@Osr2!0.28!0.92!Osr2;;chr12:30219426..30219506,+!p2@Myt1l!0.28!0.92!Myt1l;;chr5:115421126..115421137,-!p4@Hnf1a!0.28!0.92!Hnf1a;;chr5:115420882..115420896,-!p3@Hnf1a!0.28!0.92!Hnf1a;;chr7:122989594..122989626,-!p1@Sox6!0.28!0.92!Sox6;;chr10:12844757..12844771,+!p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| ||
Line 41: | Line 44: | ||
|is_a=EFO:0002091;;FF:0011253 | |is_a=EFO:0002091;;FF:0011253 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10580 | |||
|library_id_phase_based=2:CNhs10580 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;1535 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;1535 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E18.CNhs10580.1535-43I7.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E18.CNhs10580.1535-43I7.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E18.CNhs10580.1535-43I7.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E18.CNhs10580.1535-43I7.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.tissue.hCAGE/pancreas%252c%2520embryo%2520E18.CNhs10580.1535-43I7.mm9.nobarcode.rdna.fa.gz | |||
|name=pancreas, embryo E18 | |name=pancreas, embryo E18 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10580,LSID653,release008,COMPLETED | |profile_hcage=CNhs10580,LSID653,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.213284660709907,0,0,0,0,0,-0.139891718930384,0,0,0,0,0.525719250884369,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,1.32819034365437,0,0,0,0,0,0,0.0175631816956894,0,0,0,0.208137646145581,0,-0.0470438244329612,0.0140012850677768,-0.123319252735182,0.473203652140056,0.228723913720969,0,0,0,0.208137646145581,0,0,0,0,0,0,0.116420155980149,0,0.14213209858214,0,0,0,0,0.0735732008972741,0,0,0,0,0,-0.0401635196343149,0.143372210615607,-0.0416708867909336,-0.0366188601945025,0,0,0,0.0594569474405217,0.208137646145581,0,0,-0.0727745182750379,0.239221711077714,-0.0788315948399074,0,0,0,0,0,0.116420155980149,0.0727026610383567,0.131364514873778,0.131335601809745,0,0,0,0,0 | |repeat_enrich_byfamily=0.213284660709907,0,0,0,0,0,-0.139891718930384,0,0,0,0,0.525719250884369,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,1.32819034365437,0,0,0,0,0,0,0.0175631816956894,0,0,0,0.208137646145581,0,-0.0470438244329612,0.0140012850677768,-0.123319252735182,0.473203652140056,0.228723913720969,0,0,0,0.208137646145581,0,0,0,0,0,0,0.116420155980149,0,0.14213209858214,0,0,0,0,0.0735732008972741,0,0,0,0,0,-0.0401635196343149,0.143372210615607,-0.0416708867909336,-0.0366188601945025,0,0,0,0.0594569474405217,0.208137646145581,0,0,-0.0727745182750379,0.239221711077714,-0.0788315948399074,0,0,0,0,0,0.116420155980149,0.0727026610383567,0.131364514873778,0.131335601809745,0,0,0,0,0 | ||
Line 62: | Line 76: | ||
|rna_weight_ug= | |rna_weight_ug= | ||
|sample_age= | |sample_age= | ||
|sample_category=developmental | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 82: | Line 97: | ||
|top_motifs=RXRA_VDR{dimer}:2.69353523868;ATF6:2.17823181893;EN1,2:2.05034499412;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.66764133391;GCM1,2:1.5553811752;RBPJ:1.54695037979;ZNF238:1.48749620425;FOXA2:1.3853445778;XCPE1{core}:1.36847490678;SNAI1..3:1.36282484097;TLX2:1.33167840918;PDX1:1.19415729857;NR1H4:1.14741555026;TOPORS:1.13344315463;GZF1:1.11225805253;TAL1_TCF{3,4,12}:1.10877737724;SPZ1:0.997841291978;MYOD1:0.996395495212;MYBL2:0.985267162274;ZNF148:0.952624601879;ZEB1:0.866651092044;ALX4:0.850193458751;PAX1,9:0.842897792394;SP1:0.801629967241;STAT1,3:0.795590216733;TFAP4:0.792578559721;ESR1:0.771814728168;HNF1A:0.769889144139;CEBPA,B_DDIT3:0.729206216737;FOXM1:0.727519094996;LMO2:0.72529015068;NFY{A,B,C}:0.680457316978;TLX1..3_NFIC{dimer}:0.671797699652;IKZF1:0.667115604362;CDX1,2,4:0.662758936219;NFIX:0.627113579752;GATA6:0.585782477902;DBP:0.583702206593;TBP:0.573958847687;HIF1A:0.534219379071;PAX6:0.525876488832;ZNF143:0.46903734207;ONECUT1,2:0.449687581588;GFI1:0.443102219239;bHLH_family:0.429556658377;HBP1_HMGB_SSRP1_UBTF:0.424855398098;NR5A1,2:0.349533339962;TFCP2:0.348270721431;TFAP2B:0.327258233491;TEAD1:0.32423849309;SOX5:0.321905587277;ZIC1..3:0.318746576224;HSF1,2:0.315954789572;MAZ:0.294045516929;ELF1,2,4:0.292719507588;GTF2I:0.292680646518;PATZ1:0.288533194318;FOX{D1,D2}:0.27655944195;ADNP_IRX_SIX_ZHX:0.275159266141;HMX1:0.272556619728;CREB1:0.267720067323;STAT5{A,B}:0.259869411261;NKX3-2:0.258059550628;FOX{F1,F2,J1}:0.253054010138;ZNF423:0.250451516897;HAND1,2:0.227485778119;FOXD3:0.222564806311;CRX:0.210142351149;GFI1B:0.20055238478;MTF1:0.189150673554;HIC1:0.185899690733;NRF1:0.175830794379;T:0.162757464713;TEF:0.135124150559;EP300:0.118306603791;HLF:0.115196919023;ETS1,2:0.113598399892;SRF:0.10149411657;PBX1:0.100681646245;MAFB:0.0908737081161;HOX{A5,B5}:0.0748767962186;YY1:0.0575719547945;ATF2:0.0406655902215;NANOG:0.0295026052258;NR3C1:0.0137222232088;FOXP1:0.0110825158077;ALX1:-0.00958949216066;GTF2A1,2:-0.0214371385962;FOXQ1:-0.0337796088283;ELK1,4_GABP{A,B1}:-0.0397065124964;NKX2-1,4:-0.0405474979129;FOXO1,3,4:-0.0461340493842;AIRE:-0.0505147456477;RREB1:-0.0596304104242;POU6F1:-0.0626507430752;SOX17:-0.0641646540566;HMGA1,2:-0.0667453497931;SMAD1..7,9:-0.0837800457841;IRF1,2:-0.0976163469475;PRDM1:-0.102411043028;LEF1_TCF7_TCF7L1,2:-0.104304058848;RXR{A,B,G}:-0.111392140114;ESRRA:-0.116621648604;HNF4A_NR2F1,2:-0.118616893298;NKX3-1:-0.12036651709;E2F1..5:-0.123626744262;MED-1{core}:-0.124987942628;RFX1:-0.128009659614;GLI1..3:-0.1409665534;NFATC1..3:-0.142211616107;ARID5B:-0.148276134199;SOX{8,9,10}:-0.158504819916;NFIL3:-0.164320432232;NR6A1:-0.164379872559;NFKB1_REL_RELA:-0.197676655692;PPARG:-0.204382217432;BACH2:-0.206732442499;MTE{core}:-0.214756386842;AHR_ARNT_ARNT2:-0.216740482546;NANOG{mouse}:-0.21746951131;IKZF2:-0.223464063294;PAX2:-0.231693248324;ZFP161:-0.235819221817;MYFfamily:-0.239760649879;NHLH1,2:-0.247000647598;STAT2,4,6:-0.248759144522;POU2F1..3:-0.25225075706;SPIB:-0.253420287356;FOX{I1,J2}:-0.254429858696;SOX2:-0.261589607743;BREu{core}:-0.261821695893;ATF4:-0.269649309767;AR:-0.284781257061;GATA4:-0.288876669703;NFE2L2:-0.30194567777;EBF1:-0.304638809992;BPTF:-0.304997689696;TGIF1:-0.309244887986;FOSL2:-0.311902672599;EGR1..3:-0.324751243145;REST:-0.326242144527;PRRX1,2:-0.331999324388;MZF1:-0.368244516368;ATF5_CREB3:-0.368740619226;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.378865909053;NKX2-2,8:-0.378996897492;JUN:-0.379299207841;HES1:-0.379625621177;FOS_FOS{B,L1}_JUN{B,D}:-0.382522446362;RUNX1..3:-0.390368523616;PAX8:-0.409623983342;CDC5L:-0.413140038096;NFE2:-0.413705988239;ZBTB16:-0.432693407596;CUX2:-0.434634194213;PAX5:-0.439824665115;SPI1:-0.445362708643;ZBTB6:-0.450240082676;TFDP1:-0.463427686822;POU1F1:-0.470549547045;TP53:-0.471205512638;TFAP2{A,C}:-0.47842728835;MEF2{A,B,C,D}:-0.486289162846;IRF7:-0.506485642503;LHX3,4:-0.583430744503;MYB:-0.589002941005;ZNF384:-0.635505035896;UFEwm:-0.636595694844;EVI1:-0.639043490134;HOXA9_MEIS1:-0.648603040529;RFX2..5_RFXANK_RFXAP:-0.656643144855;POU5F1:-0.666923485371;KLF4:-0.703799544787;FOXN1:-0.723615163986;VSX1,2:-0.746773573609;NKX2-3_NKX2-5:-0.776344130241;DMAP1_NCOR{1,2}_SMARC:-0.79676552284;PAX4:-0.808977671734;FOXL1:-0.812788504483;TBX4,5:-0.817821076477;SREBF1,2:-0.879468846066;HOX{A4,D4}:-0.986808147542;OCT4_SOX2{dimer}:-1.02462314277;RORA:-1.04305522862;PITX1..3:-1.23518388178;POU3F1..4:-1.23858603131;FOXP3:-1.55775092671;NKX6-1,2:-1.753225012;NFE2L1:-2.30051130805 | |top_motifs=RXRA_VDR{dimer}:2.69353523868;ATF6:2.17823181893;EN1,2:2.05034499412;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.66764133391;GCM1,2:1.5553811752;RBPJ:1.54695037979;ZNF238:1.48749620425;FOXA2:1.3853445778;XCPE1{core}:1.36847490678;SNAI1..3:1.36282484097;TLX2:1.33167840918;PDX1:1.19415729857;NR1H4:1.14741555026;TOPORS:1.13344315463;GZF1:1.11225805253;TAL1_TCF{3,4,12}:1.10877737724;SPZ1:0.997841291978;MYOD1:0.996395495212;MYBL2:0.985267162274;ZNF148:0.952624601879;ZEB1:0.866651092044;ALX4:0.850193458751;PAX1,9:0.842897792394;SP1:0.801629967241;STAT1,3:0.795590216733;TFAP4:0.792578559721;ESR1:0.771814728168;HNF1A:0.769889144139;CEBPA,B_DDIT3:0.729206216737;FOXM1:0.727519094996;LMO2:0.72529015068;NFY{A,B,C}:0.680457316978;TLX1..3_NFIC{dimer}:0.671797699652;IKZF1:0.667115604362;CDX1,2,4:0.662758936219;NFIX:0.627113579752;GATA6:0.585782477902;DBP:0.583702206593;TBP:0.573958847687;HIF1A:0.534219379071;PAX6:0.525876488832;ZNF143:0.46903734207;ONECUT1,2:0.449687581588;GFI1:0.443102219239;bHLH_family:0.429556658377;HBP1_HMGB_SSRP1_UBTF:0.424855398098;NR5A1,2:0.349533339962;TFCP2:0.348270721431;TFAP2B:0.327258233491;TEAD1:0.32423849309;SOX5:0.321905587277;ZIC1..3:0.318746576224;HSF1,2:0.315954789572;MAZ:0.294045516929;ELF1,2,4:0.292719507588;GTF2I:0.292680646518;PATZ1:0.288533194318;FOX{D1,D2}:0.27655944195;ADNP_IRX_SIX_ZHX:0.275159266141;HMX1:0.272556619728;CREB1:0.267720067323;STAT5{A,B}:0.259869411261;NKX3-2:0.258059550628;FOX{F1,F2,J1}:0.253054010138;ZNF423:0.250451516897;HAND1,2:0.227485778119;FOXD3:0.222564806311;CRX:0.210142351149;GFI1B:0.20055238478;MTF1:0.189150673554;HIC1:0.185899690733;NRF1:0.175830794379;T:0.162757464713;TEF:0.135124150559;EP300:0.118306603791;HLF:0.115196919023;ETS1,2:0.113598399892;SRF:0.10149411657;PBX1:0.100681646245;MAFB:0.0908737081161;HOX{A5,B5}:0.0748767962186;YY1:0.0575719547945;ATF2:0.0406655902215;NANOG:0.0295026052258;NR3C1:0.0137222232088;FOXP1:0.0110825158077;ALX1:-0.00958949216066;GTF2A1,2:-0.0214371385962;FOXQ1:-0.0337796088283;ELK1,4_GABP{A,B1}:-0.0397065124964;NKX2-1,4:-0.0405474979129;FOXO1,3,4:-0.0461340493842;AIRE:-0.0505147456477;RREB1:-0.0596304104242;POU6F1:-0.0626507430752;SOX17:-0.0641646540566;HMGA1,2:-0.0667453497931;SMAD1..7,9:-0.0837800457841;IRF1,2:-0.0976163469475;PRDM1:-0.102411043028;LEF1_TCF7_TCF7L1,2:-0.104304058848;RXR{A,B,G}:-0.111392140114;ESRRA:-0.116621648604;HNF4A_NR2F1,2:-0.118616893298;NKX3-1:-0.12036651709;E2F1..5:-0.123626744262;MED-1{core}:-0.124987942628;RFX1:-0.128009659614;GLI1..3:-0.1409665534;NFATC1..3:-0.142211616107;ARID5B:-0.148276134199;SOX{8,9,10}:-0.158504819916;NFIL3:-0.164320432232;NR6A1:-0.164379872559;NFKB1_REL_RELA:-0.197676655692;PPARG:-0.204382217432;BACH2:-0.206732442499;MTE{core}:-0.214756386842;AHR_ARNT_ARNT2:-0.216740482546;NANOG{mouse}:-0.21746951131;IKZF2:-0.223464063294;PAX2:-0.231693248324;ZFP161:-0.235819221817;MYFfamily:-0.239760649879;NHLH1,2:-0.247000647598;STAT2,4,6:-0.248759144522;POU2F1..3:-0.25225075706;SPIB:-0.253420287356;FOX{I1,J2}:-0.254429858696;SOX2:-0.261589607743;BREu{core}:-0.261821695893;ATF4:-0.269649309767;AR:-0.284781257061;GATA4:-0.288876669703;NFE2L2:-0.30194567777;EBF1:-0.304638809992;BPTF:-0.304997689696;TGIF1:-0.309244887986;FOSL2:-0.311902672599;EGR1..3:-0.324751243145;REST:-0.326242144527;PRRX1,2:-0.331999324388;MZF1:-0.368244516368;ATF5_CREB3:-0.368740619226;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.378865909053;NKX2-2,8:-0.378996897492;JUN:-0.379299207841;HES1:-0.379625621177;FOS_FOS{B,L1}_JUN{B,D}:-0.382522446362;RUNX1..3:-0.390368523616;PAX8:-0.409623983342;CDC5L:-0.413140038096;NFE2:-0.413705988239;ZBTB16:-0.432693407596;CUX2:-0.434634194213;PAX5:-0.439824665115;SPI1:-0.445362708643;ZBTB6:-0.450240082676;TFDP1:-0.463427686822;POU1F1:-0.470549547045;TP53:-0.471205512638;TFAP2{A,C}:-0.47842728835;MEF2{A,B,C,D}:-0.486289162846;IRF7:-0.506485642503;LHX3,4:-0.583430744503;MYB:-0.589002941005;ZNF384:-0.635505035896;UFEwm:-0.636595694844;EVI1:-0.639043490134;HOXA9_MEIS1:-0.648603040529;RFX2..5_RFXANK_RFXAP:-0.656643144855;POU5F1:-0.666923485371;KLF4:-0.703799544787;FOXN1:-0.723615163986;VSX1,2:-0.746773573609;NKX2-3_NKX2-5:-0.776344130241;DMAP1_NCOR{1,2}_SMARC:-0.79676552284;PAX4:-0.808977671734;FOXL1:-0.812788504483;TBX4,5:-0.817821076477;SREBF1,2:-0.879468846066;HOX{A4,D4}:-0.986808147542;OCT4_SOX2{dimer}:-1.02462314277;RORA:-1.04305522862;PITX1..3:-1.23518388178;POU3F1..4:-1.23858603131;FOXP3:-1.55775092671;NKX6-1,2:-1.753225012;NFE2L1:-2.30051130805 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:1535-43I7;search_select_hide=table117:1535-43I7 | |||
}} | }} |
Latest revision as of 19:08, 4 June 2020
Name: | pancreas, embryo E18 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10580 |
Sample type: | developmental |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10580
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0.0325 |
1001 | 0.0307 |
1002 | 0.115 |
1003 | -0.087 |
1004 | 0 |
1005 | 0 |
1006 | -0.0262 |
1007 | -0.0184 |
1008 | 0 |
1009 | 0.148 |
101 | 0.033 |
1010 | 0.348 |
1011 | -0.101 |
1012 | 0 |
1013 | 0.529 |
1014 | 0.261 |
1015 | -0.0194 |
1016 | -0.061 |
1017 | 0 |
1018 | 0.0567 |
1019 | 0 |
102 | 0 |
1020 | 0 |
1021 | 0.116 |
1022 | 0.327 |
1023 | 0 |
1024 | 0.116 |
1025 | 0.287 |
1026 | 0 |
1027 | 0.0554 |
1028 | 0 |
1029 | -0.0604 |
103 | 0.147 |
1030 | 0 |
1031 | 0.296 |
1032 | 0.1 |
1033 | 0.116 |
1034 | 0.368 |
1035 | 0 |
1036 | -0.0224 |
1037 | 0 |
1038 | 0.0319 |
1039 | 0.0159 |
104 | 0 |
1040 | 0.0939 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10580
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10580
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.853 |
10 | 10 | 0.488 |
100 | 100 | 0.775 |
101 | 101 | 0.32 |
102 | 102 | 0.717 |
103 | 103 | 0.854 |
104 | 104 | 0.267 |
105 | 105 | 0.837 |
106 | 106 | 0.427 |
107 | 107 | 0.61 |
108 | 108 | 0.863 |
109 | 109 | 0.0387 |
11 | 11 | 0.772 |
110 | 110 | 0.354 |
111 | 111 | 0.689 |
112 | 112 | 0.882 |
113 | 113 | 0.0689 |
114 | 114 | 0.0529 |
115 | 115 | 0.86 |
116 | 116 | 0.538 |
117 | 117 | 0.893 |
118 | 118 | 0.122 |
119 | 119 | 0.816 |
12 | 12 | 0.167 |
120 | 120 | 0.621 |
121 | 121 | 0.178 |
122 | 122 | 0.475 |
123 | 123 | 0.433 |
124 | 124 | 0.355 |
125 | 125 | 0.134 |
126 | 126 | 0.0679 |
127 | 127 | 0.882 |
128 | 128 | 0.462 |
129 | 129 | 0.846 |
13 | 13 | 0.00689 |
130 | 130 | 0.836 |
131 | 131 | 0.137 |
132 | 132 | 0.865 |
133 | 133 | 0.582 |
134 | 134 | 0.114 |
135 | 135 | 0.506 |
136 | 136 | 0.0125 |
137 | 137 | 0.0929 |
138 | 138 | 0.0181 |
139 | 139 | 0.465 |
14 | 14 | 0.849 |
140 | 140 | 0.497 |
141 | 141 | 0.901 |
142 | 142 | 0.45 |
143 | 143 | 0.903 |
144 | 144 | 0.14 |
145 | 145 | 0.622 |
146 | 146 | 0.316 |
147 | 147 | 0.204 |
148 | 148 | 0.178 |
149 | 149 | 0.356 |
15 | 15 | 0.163 |
150 | 150 | 0.645 |
151 | 151 | 0.322 |
152 | 152 | 0.0149 |
153 | 153 | 0.76 |
154 | 154 | 0.132 |
155 | 155 | 0.978 |
156 | 156 | 0.00241 |
157 | 157 | 0.643 |
158 | 158 | 0.709 |
159 | 159 | 0.789 |
160 | 160 | 0.171 |
161 | 161 | 0.197 |
162 | 162 | 0.574 |
163 | 163 | 0.967 |
164 | 164 | 0.7 |
165 | 165 | 0.811 |
166 | 166 | 0.0726 |
167 | 167 | 0.36 |
168 | 168 | 0.683 |
169 | 169 | 0.144 |
17 | 17 | 0.324 |
18 | 18 | 0.0618 |
19 | 19 | 0.0743 |
2 | 2 | 0.303 |
20 | 20 | 0.735 |
21 | 21 | 0.572 |
22 | 22 | 0.266 |
23 | 23 | 0.935 |
24 | 24 | 0.0486 |
25 | 25 | 0.388 |
26 | 26 | 0.0576 |
27 | 27 | 0.974 |
28 | 28 | 0.129 |
29 | 29 | 0.743 |
3 | 3 | 0.489 |
30 | 30 | 0.287 |
31 | 31 | 0.779 |
32 | 32 | 0.761 |
33 | 33 | 0.225 |
34 | 34 | 0.656 |
35 | 35 | 0.0564 |
36 | 36 | 0.864 |
37 | 37 | 0.262 |
38 | 38 | 0.896 |
39 | 39 | 0.374 |
4 | 4 | 0.237 |
40 | 40 | 0.249 |
41 | 41 | 0.096 |
42 | 42 | 0.825 |
43 | 43 | 0.584 |
44 | 44 | 0.966 |
45 | 45 | 0.462 |
46 | 46 | 0.677 |
47 | 47 | 0.918 |
48 | 48 | 0.979 |
49 | 49 | 0.291 |
5 | 5 | 0.216 |
50 | 50 | 0.239 |
51 | 51 | 0.985 |
52 | 52 | 0.371 |
53 | 53 | 0.391 |
54 | 54 | 0.561 |
55 | 55 | 0.874 |
56 | 56 | 0.406 |
57 | 57 | 0.0616 |
58 | 58 | 0.814 |
59 | 59 | 0.0693 |
6 | 6 | 0.465 |
60 | 60 | 0.249 |
61 | 61 | 0.339 |
62 | 62 | 0.326 |
63 | 63 | 0.411 |
64 | 64 | 0.953 |
65 | 65 | 0.367 |
66 | 66 | 0.0534 |
67 | 67 | 0.85 |
68 | 68 | 0.0473 |
69 | 69 | 0.908 |
7 | 7 | 0.329 |
70 | 70 | 0.156 |
71 | 71 | 0.454 |
72 | 72 | 0.446 |
73 | 73 | 0.0587 |
74 | 74 | 0.802 |
75 | 75 | 0.971 |
76 | 76 | 0.21 |
77 | 77 | 0.0736 |
78 | 78 | 0.73 |
79 | 79 | 0.11 |
8 | 8 | 0.908 |
80 | 80 | 0.171 |
81 | 81 | 0.0716 |
82 | 82 | 0.986 |
83 | 83 | 0.886 |
84 | 84 | 0.0778 |
85 | 85 | 0.826 |
86 | 86 | 0.424 |
87 | 87 | 0.0366 |
88 | 88 | 0.255 |
89 | 89 | 0.71 |
9 | 9 | 0.664 |
90 | 90 | 0.466 |
91 | 91 | 0.968 |
92 | 92 | 0.372 |
93 | 93 | 0.957 |
94 | 94 | 0.0247 |
95 | 95 | 0.301 |
96 | 96 | 0.123 |
97 | 97 | 0.0395 |
98 | 98 | 0.43 |
99 | 99 | 0.304 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10580
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000479 (tissue)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000999 (fetal tissue sample)
0000292 (embryonic day sample - mouse)
0000004 (tissue sample)
0000302 (mouse embryonic day 18 sample)
0011253 (mouse pancreas- embryo E18 sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
FF:0000294 (mouse embryonic day 11 sample)