FFCP PHASE1:Hg19::chr2:176981499..176981522,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:176981499..176981522,+
|short_description=p2@HOXD10
|description=CAGE_peak_2_at_HOXD10_5end
|association_with_transcript=7bp_to_NM_002148,uc002ukj.2_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3236 | |EntrezGene=3236 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5133 | |HGNC=5133 | ||
|TSSclassifier=strong | |||
|UniProt=P28358 | |UniProt=P28358 | ||
|association_with_transcript=7bp_to_NM_002148,uc002ukj.2_5end | |||
|cluster_id=chr2:176981499..176981522,+ | |||
|coexpression_cluster_id=C2672 | |||
|description=CAGE_peak_2_at_HOXD10_5end | |||
|id=chr2:176981499..176981522,+ | |||
|ontology_enrichment_celltype=CL:1000497!9.41e-13!18;CL:0002518!9.41e-13!18;CL:1000449!9.45e-13!16;CL:1000507!1.68e-12!12;CL:1000494!1.68e-12!12;CL:0005020!3.54e-11!6;CL:0002138!3.54e-11!6;CL:0005022!3.54e-11!6;CL:0002681!9.28e-09!13;CL:0002584!9.28e-09!13 | |||
|ontology_enrichment_celltype_v019=CL:0002138;1.76e-18;6!CL:1000507;4.35e-17;10!CL:1000494;4.35e-17;10!CL:1000449;9.49e-14;15!CL:1000497;6.19e-12;17!CL:0002518;6.19e-12;17!CL:0002541;1.97e-09;3!CL:0002144;2.15e-09;3!CL:0002139;1.11e-08;24!CL:0002681;9.68e-08;12!CL:0002584;9.68e-08;12!CL:0002078;8.45e-07;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0005020,1.80e-18,6;CL:0002138,1.80e-18,6;CL:0005022,1.80e-18,6;CL:1000507,3.52e-17,10;CL:1000494,3.52e-17,10;CL:1000449,7.49e-14,15;CL:1000497,5.04e-12,17;CL:0002518,5.04e-12,17;CL:0002541,2.09e-09,3;CL:0002144,2.89e-09,3;CL:0002139,1.23e-08,24;CL:0002078,3.51e-08,45;CL:0002681,8.50e-08,12;CL:0002584,8.50e-08,12 | |||
|ontology_enrichment_development_v019=CL:0005022;1.76e-18;6!UBERON:0005795;1.10e-10;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060084;8.09e-10;3!DOID:127;8.09e-10;3!DOID:0060072;1.87e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,5.64e-10,3;DOID:127,5.64e-10,3;DOID:0060072,1.43e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004876!3.74e-18!20;UBERON:0000080!2.50e-15!18;UBERON:0002120!2.50e-15!18;UBERON:0004875!2.50e-15!18;UBERON:0005721!2.50e-15!18;UBERON:0005754!2.50e-15!18;UBERON:0007297!2.50e-15!18;UBERON:0000489!2.62e-14!32;UBERON:0003887!2.94e-14!21;UBERON:0006555!4.96e-14!17;UBERON:0005103!4.96e-14!17;UBERON:0000083!4.96e-14!17;UBERON:0009201!4.96e-14!17;UBERON:0004819!4.96e-14!17;UBERON:0006553!4.96e-14!17;UBERON:0003074!4.96e-14!17;UBERON:0003060!4.96e-14!17;UBERON:0002113!5.98e-14!27;UBERON:0003918!5.98e-14!27;UBERON:0005095!5.98e-14!27;UBERON:0007687!5.98e-14!27;UBERON:0004211!9.45e-13!16;UBERON:0001285!9.45e-13!16;UBERON:0007684!9.45e-13!16;UBERON:0003220!9.45e-13!16;UBERON:0004208!9.45e-13!16;UBERON:0000058!9.95e-13!26;UBERON:0009773!1.68e-12!12;UBERON:0001231!1.68e-12!12;UBERON:0004810!1.68e-12!12;UBERON:0003064!1.45e-11!37;UBERON:0001473!9.20e-11!8;UBERON:0004536!9.20e-11!8;UBERON:0006558!9.20e-11!8;UBERON:0002465!1.29e-10!10;UBERON:0003135!1.74e-10!11;UBERON:0001008!1.12e-09!45;UBERON:0003886!5.18e-09!63;UBERON:0006554!7.23e-09!44;UBERON:0001225!9.28e-09!13;UBERON:0008987!9.28e-09!13;UBERON:0003133!1.85e-08!48;UBERON:0000464!2.48e-08!104;UBERON:0002553!3.04e-08!70;UBERON:0005631!5.00e-08!14;UBERON:0000158!5.00e-08!14;UBERON:0003103!7.21e-08!69;UBERON:0005177!2.05e-07!107;UBERON:0005904!3.33e-07!4;UBERON:0005156!8.91e-07!59;UBERON:0000990!8.91e-07!59;UBERON:0001851!9.47e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0001473;4.55e-18;8!UBERON:0004536;4.55e-18;8!UBERON:0006558;4.55e-18;8!UBERON:0004211;4.35e-17;10!UBERON:0009773;4.35e-17;10!UBERON:0001231;4.35e-17;10!UBERON:0004810;4.35e-17;10!UBERON:0002465;3.12e-14;10!UBERON:0000489;4.43e-14;29!UBERON:0006555;9.49e-14;15!UBERON:0004819;9.49e-14;15!UBERON:0001285;9.49e-14;15!UBERON:0007684;9.49e-14;15!UBERON:0002113;1.88e-12;24!UBERON:0011143;1.88e-12;24!UBERON:0005904;2.08e-11;4!UBERON:0006554;2.56e-11;30!UBERON:0001008;2.56e-11;30!UBERON:0004175;8.95e-10;21!UBERON:0003124;1.97e-09;3!UBERON:0000920;1.97e-09;3!UBERON:0010523;2.15e-09;3!UBERON:0001915;2.15e-09;3!UBERON:0001982;2.15e-09;3!UBERON:0003135;8.07e-09;11!UBERON:0006947;9.58e-09;3!UBERON:0004054;9.58e-09;3!UBERON:0001225;9.68e-08;12!UBERON:0008987;9.68e-08;12!UBERON:0005631;2.37e-07;10!UBERON:0000158;2.37e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,4.27e-18,8;UBERON:0004536,4.27e-18,8;UBERON:0006558,4.27e-18,8;UBERON:0000489,1.51e-17,31;UBERON:0004810,3.52e-17,10;UBERON:0002113,5.43e-16,26;UBERON:0003918,5.43e-16,26;UBERON:0011143,5.43e-16,26;UBERON:0005095,5.43e-16,26;UBERON:0007687,5.43e-16,26;UBERON:0006555,6.80e-16,16;UBERON:0004819,6.80e-16,16;UBERON:0002465,2.97e-14,10;UBERON:0004211,7.49e-14,15;UBERON:0009773,7.49e-14,15;UBERON:0001231,7.49e-14,15;UBERON:0001285,7.49e-14,15;UBERON:0007684,7.49e-14,15;UBERON:0004208,7.49e-14,15;UBERON:0001008,4.53e-13,48;UBERON:0004876,7.38e-12,11;UBERON:0006554,8.50e-12,47;UBERON:0005904,1.71e-11,4;UBERON:0004175,7.53e-10,25;UBERON:0000920,2.09e-09,3;UBERON:0010523,2.89e-09,3;UBERON:0001915,2.89e-09,3;UBERON:0001982,2.89e-09,3;UBERON:0003135,6.86e-09,11;UBERON:0006947,7.65e-09,3;UBERON:0004054,7.65e-09,3;UBERON:0003133,9.41e-09,48;UBERON:0003064,3.73e-08,28;UBERON:0001225,8.50e-08,12;UBERON:0008987,8.50e-08,12;UBERON:0005156,1.20e-07,59;UBERON:0000990,1.20e-07,59;UBERON:0000080,1.40e-07,9;UBERON:0002120,1.40e-07,9;UBERON:0004875,1.40e-07,9;UBERON:0005721,1.40e-07,9;UBERON:0005754,1.40e-07,9;UBERON:0007297,1.40e-07,9;UBERON:0005631,4.76e-07,14;UBERON:0000158,4.76e-07,14;UBERON:0003124,9.58e-07,7 | |||
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| ||
|short_description=p2@HOXD10 | |||
}} | }} |
Latest revision as of 08:56, 18 September 2015
Short description: | p2@HOXD10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HOXD10_5end |
Coexpression cluster: | C2672_uterus_kidney_nonsmall_smallcell_breast_Osteoblast_Endothelial |
Association with transcript: | 7bp_to_NM_002148, uc002ukj.2_5end |
EntrezGene: | HOXD10 |
HGNC: | 5133 |
UniProt: | P28358 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphangioblast | 1.80e-18 | 6 |
endothelial cell of lymphatic vessel | 1.80e-18 | 6 |
vascular lymphangioblast | 1.80e-18 | 6 |
kidney tubule cell | 3.52e-17 | 10 |
nephron tubule epithelial cell | 3.52e-17 | 10 |
epithelial cell of nephron | 7.49e-14 | 15 |
kidney cell | 5.04e-12 | 17 |
kidney epithelial cell | 5.04e-12 | 17 |
chorionic membrane mesenchymal stem cell | 2.09e-09 | 3 |
capillary endothelial cell | 2.89e-09 | 3 |
endothelial cell of vascular tree | 1.23e-08 | 24 |
meso-epithelial cell | 3.51e-08 | 45 |
kidney cortical cell | 8.50e-08 | 12 |
renal cortical epithelial cell | 8.50e-08 | 12 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 5.64e-10 | 3 |
leiomyoma | 5.64e-10 | 3 |
benign neoplasm | 1.43e-07 | 4 |