FFCP PHASE1:Hg19::chr2:27719697..27719723,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr2:27719697..27719723,+
|short_description=p1@GCKR
|description=CAGE_peak_1_at_GCKR_5end
|association_with_transcript=0bp_to_ENST00000264717,ENST00000417872,E...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2646 | |EntrezGene=2646 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4196 | |HGNC=4196 | ||
|TSSclassifier=strong | |||
|UniProt=Q14397,B4DPQ2,F5H1P6 | |UniProt=Q14397,B4DPQ2,F5H1P6 | ||
|association_with_transcript=0bp_to_ENST00000264717,ENST00000417872,ENST00000424318,NM_001486,uc002rky.2,uc010ezd.2,uc010ylu.1_5end | |||
|cluster_id=chr2:27719697..27719723,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_GCKR_5end | |||
|id=chr2:27719697..27719723,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.79e-17!42;CL:0000860!2.70e-15!45;CL:0000557!8.59e-12!71;CL:0002009!2.60e-11!65;CL:1000413!8.43e-11!9;CL:0000359!3.34e-10!32;CL:0000839!4.81e-10!70;CL:0002194!7.95e-10!63;CL:0000576!7.95e-10!63;CL:0000040!7.95e-10!63;CL:0000559!7.95e-10!63;CL:0000766!2.84e-09!76;CL:0000763!5.54e-08!112;CL:0000049!5.54e-08!112;CL:0000071!8.70e-08!18;CL:0002546!8.70e-08!18;CL:0002544!1.17e-07!6;CL:0000181!5.88e-07!12;CL:0000417!5.88e-07!12;CL:0000668!5.88e-07!12;CL:0000414!5.88e-07!12;CL:0000412!5.88e-07!12;CL:0000182!5.88e-07!12;CL:0002494!9.50e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0000182;5.49e-14;12!CL:1000413;7.46e-13;9!CL:0000359;5.09e-11;32!CL:0002544;2.74e-10;6!CL:0000860;3.70e-09;33!CL:0002057;3.70e-09;33!CL:0002595;1.56e-08;5!CL:0000192;3.82e-07;43!CL:0001014;5.59e-07;2!CL:0001016;5.59e-07;2!CL:1000306;8.45e-07;4!CL:0002547;8.45e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.91e-14,12;CL:1000413,7.20e-13,9;CL:0000860,1.99e-11,42;CL:0002057,1.99e-11,42;CL:0000359,7.68e-11,32;CL:0002544,3.08e-10,6;CL:0000473,1.53e-09,48;CL:0000234,1.53e-09,48;CL:0002009,6.57e-09,61;CL:0002595,1.92e-08,5;CL:0000557,9.12e-08,67;CL:0000192,2.41e-07,43;CL:0000514,2.41e-07,43;CL:0001014,5.60e-07,2;CL:0001016,5.60e-07,2;CL:0002194,6.14e-07,59;CL:0000576,6.14e-07,59;CL:0000040,6.14e-07,59;CL:0000559,6.14e-07,59;CL:1000306,7.50e-07,4;CL:0002547,7.50e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0009497;1.24e-15;13!UBERON:0004161;4.31e-15;11!CL:0002057;1.12e-08;42!CL:0000514;3.82e-07;43!UBERON:0003104;6.60e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003914!2.33e-27!118;UBERON:0001637!2.36e-25!42;UBERON:0003509!2.36e-25!42;UBERON:0004572!2.36e-25!42;UBERON:0004872!3.04e-21!84;UBERON:0004573!5.34e-21!33;UBERON:0004571!5.34e-21!33;UBERON:0001981!2.71e-20!60;UBERON:0007500!2.71e-20!60;UBERON:0004537!2.71e-20!60;UBERON:0006965!2.71e-20!60;UBERON:0003081!4.45e-19!216;UBERON:0000055!4.86e-16!69;UBERON:0001009!8.29e-13!113;UBERON:0002049!1.56e-12!79;UBERON:0007798!1.56e-12!79;UBERON:0002405!6.28e-12!115;UBERON:0000490!1.13e-11!138;UBERON:0004535!2.12e-11!110;UBERON:0000025!3.67e-11!194;UBERON:0000947!4.78e-11!21;UBERON:0010191!4.78e-11!21;UBERON:0009497!6.97e-11!25;UBERON:0000015!6.97e-11!25;UBERON:0002423!6.97e-11!25;UBERON:0006235!6.97e-11!25;UBERON:0004161!6.97e-11!25;UBERON:0003915!8.43e-11!9;UBERON:0004700!8.43e-11!9;UBERON:0001917!8.43e-11!9;UBERON:0000926!6.52e-10!448;UBERON:0004120!6.52e-10!448;UBERON:0006603!6.52e-10!448;UBERON:0002371!2.26e-09!80;UBERON:0002204!6.35e-09!167;UBERON:0008835!2.71e-08!22;UBERON:0003894!2.71e-08!22;UBERON:0001474!4.48e-08!86;UBERON:0007100!8.41e-08!27;UBERON:0001986!8.70e-08!18;UBERON:0004638!8.70e-08!18;UBERON:0004852!8.70e-08!18;UBERON:0009854!9.12e-08!23;UBERON:0002107!2.96e-07!19;UBERON:0006925!2.96e-07!19;UBERON:0008836!2.96e-07!19;UBERON:0007499!7.54e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;1.42e-25;33!UBERON:0004571;1.42e-25;33!UBERON:0001637;1.17e-21;42!UBERON:0003509;1.17e-21;42!UBERON:0004572;1.17e-21;42!UBERON:0000947;3.97e-18;21!UBERON:0010191;3.97e-18;21!UBERON:0002423;2.40e-16;25!UBERON:0002107;2.78e-13;19!UBERON:0006925;2.78e-13;19!UBERON:0003915;7.46e-13;9!UBERON:0004700;7.46e-13;9!UBERON:0001917;7.46e-13;9!UBERON:0007500;3.58e-11;56!UBERON:0001981;3.58e-11;56!UBERON:0004537;3.58e-11;56!UBERON:0003834;1.56e-08;5!UBERON:0001533;1.56e-08;5!UBERON:0002365;3.55e-07;31!UBERON:0002330;3.55e-07;31!UBERON:0000055;4.42e-07;65!UBERON:0004797;8.45e-07;4!UBERON:0000415;8.45e-07;4!UBERON:0007240;8.45e-07;4!UBERON:0005742;8.45e-07;4!UBERON:0005734;8.45e-07;4!UBERON:0004664;8.45e-07;4!UBERON:0004663;8.45e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,2.59e-29,33;UBERON:0004571,2.59e-29,33;UBERON:0001637,1.14e-26,42;UBERON:0003509,1.14e-26,42;UBERON:0004572,1.14e-26,42;UBERON:0003914,1.53e-21,117;UBERON:0000947,5.15e-18,21;UBERON:0010191,5.15e-18,21;UBERON:0007500,3.21e-17,59;UBERON:0001981,3.21e-17,59;UBERON:0004537,3.21e-17,59;UBERON:0006965,3.21e-17,59;UBERON:0009497,2.22e-16,25;UBERON:0000015,2.22e-16,25;UBERON:0002423,2.22e-16,25;UBERON:0006235,2.22e-16,25;UBERON:0004161,2.22e-16,25;UBERON:0000055,3.70e-14,68;UBERON:0008835,2.12e-13,22;UBERON:0003894,2.12e-13,22;UBERON:0002107,2.95e-13,19;UBERON:0006925,2.95e-13,19;UBERON:0008836,2.95e-13,19;UBERON:0003915,7.20e-13,9;UBERON:0004700,7.20e-13,9;UBERON:0001917,7.20e-13,9;UBERON:0009854,1.05e-12,23;UBERON:0000490,7.14e-12,148;UBERON:0004872,1.10e-11,83;UBERON:0002049,1.32e-11,78;UBERON:0007798,1.32e-11,78;UBERON:0003081,1.59e-11,203;UBERON:0007499,1.73e-11,25;UBERON:0009856,5.99e-11,26;UBERON:0000025,2.17e-09,192;UBERON:0003834,1.92e-08,5;UBERON:0001533,1.92e-08,5;UBERON:0005256,2.71e-08,122;UBERON:0004535,1.49e-07,109;UBERON:0002204,1.78e-07,167;UBERON:0002365,2.74e-07,31;UBERON:0002330,2.74e-07,31;UBERON:0001009,3.30e-07,112;UBERON:0005172,4.10e-07,54;UBERON:0005173,4.10e-07,54;UBERON:0003929,6.33e-07,54;UBERON:0000415,7.50e-07,4;UBERON:0007240,7.50e-07,4;UBERON:0005742,7.50e-07,4;UBERON:0005734,7.50e-07,4;UBERON:0004664,7.50e-07,4;UBERON:0004663,7.50e-07,4 | |||
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| ||
|short_description=p1@GCKR | |||
}} | }} |
Latest revision as of 17:45, 16 September 2015
Short description: | p1@GCKR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GCKR_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000264717, ENST00000417872, ENST00000424318, NM_001486, uc002rky.2, uc010ezd.2, uc010ylu.1_5end |
EntrezGene: | GCKR |
HGNC: | 4196 |
UniProt: | Q14397B4DPQ2F5H1P6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.91e-14 | 12 |
endothelial cell of artery | 7.20e-13 | 9 |
classical monocyte | 1.99e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.99e-11 | 42 |
vascular associated smooth muscle cell | 7.68e-11 | 32 |
aortic endothelial cell | 3.08e-10 | 6 |
defensive cell | 1.53e-09 | 48 |
phagocyte | 1.53e-09 | 48 |
macrophage dendritic cell progenitor | 6.57e-09 | 61 |
smooth muscle cell of the subclavian artery | 1.92e-08 | 5 |
granulocyte monocyte progenitor cell | 9.12e-08 | 67 |
smooth muscle cell | 2.41e-07 | 43 |
smooth muscle myoblast | 2.41e-07 | 43 |
CD1a-positive Langerhans cell | 5.60e-07 | 2 |
immature CD1a-positive Langerhans cell | 5.60e-07 | 2 |
monopoietic cell | 6.14e-07 | 59 |
monocyte | 6.14e-07 | 59 |
monoblast | 6.14e-07 | 59 |
promonocyte | 6.14e-07 | 59 |
fibroblast of tunica adventitia of artery | 7.50e-07 | 4 |
fibroblast of the aortic adventitia | 7.50e-07 | 4 |