FFCP PHASE1:Mm9::chr8:85982334..85982341,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100505320,56367 | |EntrezGene=100505320,56367 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=727 | |MCL_coexpression_id=727 | ||
|TSSclassifier=NA | |||
|UniProt=Q78YZ6 | |UniProt=Q78YZ6 | ||
|association_with_transcript=-44bp_to_ENSMUST00000081506,NM_001039137,uc009mkh.1_5end | |association_with_transcript=-44bp_to_ENSMUST00000081506,NM_001039137,uc009mkh.1_5end | ||
|cluster_id=chr8:85982334..85982341,- | |||
|description=CAGE_peak_10_at_LOC100505320_5end,CAGE_peak_10_at_Scoc_5end | |description=CAGE_peak_10_at_LOC100505320_5end,CAGE_peak_10_at_Scoc_5end | ||
|id=chr8:85982334..85982341,- | |id=chr8:85982334..85982341,- | ||
|ontology_enrichment_celltype=CL:0002563!8.30e-10!9;CL:0002251!8.30e-10!9;CL:0000075!6.35e-08!7;CL:0000066!1.51e-07!25;CL:0000239!9.24e-07!6;CL:0000677!9.24e-07!6;CL:0000212!9.24e-07!6;CL:0000584!9.24e-07!6 | |ontology_enrichment_celltype=CL:0002563!8.30e-10!9;CL:0002251!8.30e-10!9;CL:0000075!6.35e-08!7;CL:0000066!1.51e-07!25;CL:0000239!9.24e-07!6;CL:0000677!9.24e-07!6;CL:0000212!9.24e-07!6;CL:0000584!9.24e-07!6 | ||
|ontology_enrichment_celltype_v019_2=CL:0000682,3.09e-10,3;CL:0000239,1.60e-09,6;CL:0000677,1.60e-09,6;CL:0000584,1.60e-09,6;CL:0000075,3.58e-08,7;CL:0000066,1.95e-07,25 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!5.42e-21!43;UBERON:0005409!1.23e-20!59;UBERON:0000344!4.73e-15!15;UBERON:0000485!3.21e-12!11;UBERON:0001242!3.51e-12!13;UBERON:0000060!3.51e-12!13;UBERON:0001262!3.51e-12!13;UBERON:0004786!3.51e-12!13;UBERON:0003350!8.30e-10!9;UBERON:0004808!8.30e-10!9;UBERON:0001277!8.30e-10!9;UBERON:0004923!4.09e-08!24 | |ontology_enrichment_uberon=UBERON:0000160!5.42e-21!43;UBERON:0005409!1.23e-20!59;UBERON:0000344!4.73e-15!15;UBERON:0000485!3.21e-12!11;UBERON:0001242!3.51e-12!13;UBERON:0000060!3.51e-12!13;UBERON:0001262!3.51e-12!13;UBERON:0004786!3.51e-12!13;UBERON:0003350!8.30e-10!9;UBERON:0004808!8.30e-10!9;UBERON:0001277!8.30e-10!9;UBERON:0004923!4.09e-08!24 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,9.24e-38,31;UBERON:0005409,1.10e-23,47;UBERON:0000344,6.63e-11,15;UBERON:0001007,1.26e-09,116;UBERON:0001555,1.26e-09,116;UBERON:0007026,1.26e-09,116;UBERON:0004119,2.15e-09,118;UBERON:0000925,2.15e-09,118;UBERON:0006595,2.15e-09,118;UBERON:0001962,3.41e-08,2;UBERON:0001961,3.41e-08,2;UBERON:0001744,3.41e-08,2;UBERON:0004921,1.37e-07,114;UBERON:0000485,1.40e-07,11 | |||
|phase1_expression=1.44133962394315,3.14077866875425,3.18499467572675,4.23449895829562,1.50268718983904,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11975752938901,2.98232065387321,1.72269589234506,1.7230479846363,1.50829862880122,0.380046838912748,0.252030129759931,0,0,0,0,0.288851619751275,0.498703936075477,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0654846625031,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8688452342709,1.85115396664481,0,0,0.257734922644187,1.61346819698674,2.44615848229357,3.23383564391351,7.59246498471219,2.14108641141214,2.01068167040216,2.98434708061726,1.55971269695296,6.29173586057955,4.10662294761919,6.96994456390285,0,0,0,0,0.193952487167626,0,0.316182685621286,0.885660887877613,1.8839847340965,0.863780147452604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.66369338607761,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0.108005340821801,0,0.218362563746178,0.134864346384821,0.0826534557253359,0.523511883968059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0,0.412070114477788,0,0,0,0.188626341386076,0.280924522409647,0.0640251524048693,0,0,0.463537303779422,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0,0.282328141245992,0.0846146078916765,0,0.789209134313529,0.135804113845862,0.561142271657738,0,0.29551344712669,0,0,0,0,0,0.214871054048298,0,0,0 | |phase1_expression=1.44133962394315,3.14077866875425,3.18499467572675,4.23449895829562,1.50268718983904,0,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.11975752938901,2.98232065387321,1.72269589234506,1.7230479846363,1.50829862880122,0.380046838912748,0.252030129759931,0,0,0,0,0.288851619751275,0.498703936075477,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.704217098883403,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.0654846625031,0,0,0,0,0,0,0,0,0,0,0,0.124406970610093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.8688452342709,1.85115396664481,0,0,0.257734922644187,1.61346819698674,2.44615848229357,3.23383564391351,7.59246498471219,2.14108641141214,2.01068167040216,2.98434708061726,1.55971269695296,6.29173586057955,4.10662294761919,6.96994456390285,0,0,0,0,0.193952487167626,0,0.316182685621286,0.885660887877613,1.8839847340965,0.863780147452604,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.516856586336442,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.66369338607761,0,0,0,0,0,0,0,0,0,0,0.954670618015114,0,0,0.108005340821801,0,0.218362563746178,0.134864346384821,0.0826534557253359,0.523511883968059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367687016900028,0,0.412070114477788,0,0,0,0.188626341386076,0.280924522409647,0.0640251524048693,0,0,0.463537303779422,0.192909220463705,0,0.147198920134397,0,0.177475806159338,0,0,0.282328141245992,0.0846146078916765,0,0.789209134313529,0.135804113845862,0.561142271657738,0,0.29551344712669,0,0,0,0,0,0.214871054048298,0,0,0 | ||
|short_description=p10@LOC100505320,p10@Scoc | |short_description=p10@LOC100505320,p10@Scoc | ||
}} | }} |
Latest revision as of 20:35, 25 September 2015
Short description: | p10@LOC100505320, p10@Scoc |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_LOC100505320_5end, CAGE_peak_10_at_Scoc_5end |
Coexpression cluster: | MCL_coexpression_mm9:727 |
Association with transcript: | -44bp_to_ENSMUST00000081506, NM_001039137, uc009mkh.1_5end |
EntrezGene: | 100505320,56367 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 3.09e-10 | 3 |
brush border epithelial cell | 1.60e-09 | 6 |
gut absorptive cell | 1.60e-09 | 6 |
enterocyte | 1.60e-09 | 6 |
columnar/cuboidal epithelial cell | 3.58e-08 | 7 |
epithelial cell | 1.95e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 9.24e-38 | 31 |
gastrointestinal system | 1.10e-23 | 47 |
mucosa | 6.63e-11 | 15 |
digestive system | 1.26e-09 | 116 |
digestive tract | 1.26e-09 | 116 |
primitive gut | 1.26e-09 | 116 |
endoderm-derived structure | 2.15e-09 | 118 |
endoderm | 2.15e-09 | 118 |
presumptive endoderm | 2.15e-09 | 118 |
gut-associated lymphoid tissue | 3.41e-08 | 2 |
mucosa-associated lymphoid tissue | 3.41e-08 | 2 |
lymphoid tissue | 3.41e-08 | 2 |
subdivision of digestive tract | 1.37e-07 | 114 |
simple columnar epithelium | 1.40e-07 | 11 |