FFCP PHASE1:Hg19::chr5:140890540..140890552,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr5:140890540..140890552,+
|short_description=p6@PCDHGC3
|description=CAGE_peak_6_at_PCDHGC3_5end
|association_with_transcript=15bp_to_BC004321_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=5098 | |EntrezGene=5098 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=8716 | |HGNC=8716 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BT64 | |UniProt=Q9BT64 | ||
|association_with_transcript=15bp_to_BC004321_5end | |||
|cluster_id=chr5:140890540..140890552,+ | |||
|description=CAGE_peak_6_at_PCDHGC3_5end | |||
|id=chr5:140890540..140890552,+ | |||
|ontology_enrichment_celltype=CL:0000055!5.73e-09!180 | |||
|ontology_enrichment_celltype_v019=CL:0002564;1.78e-10;3!CL:0002581;1.77e-08;1!CL:0002591;1.77e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002564,3.47e-10,3;CL:0002581,1.18e-08,1;CL:0002591,3.06e-08,1 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.33e-20!57;UBERON:0005068!5.33e-20!57;UBERON:0006241!5.33e-20!57;UBERON:0007135!5.33e-20!57;UBERON:0002616!4.25e-17!59;UBERON:0001893!2.63e-16!34;UBERON:0002020!2.83e-16!34;UBERON:0003528!2.83e-16!34;UBERON:0001017!4.17e-16!82;UBERON:0000475!5.98e-16!365;UBERON:0002791!9.42e-16!33;UBERON:0001869!2.75e-15!32;UBERON:0005743!3.50e-15!86;UBERON:0000955!1.83e-14!69;UBERON:0006238!1.83e-14!69;UBERON:0003080!2.83e-14!42;UBERON:0002780!1.35e-13!41;UBERON:0001890!1.35e-13!41;UBERON:0006240!1.35e-13!41;UBERON:0000073!3.20e-13!94;UBERON:0001016!3.20e-13!94;UBERON:0002346!4.78e-12!90;UBERON:0003075!5.73e-12!86;UBERON:0007284!5.73e-12!86;UBERON:0000956!6.50e-11!25;UBERON:0000203!6.50e-11!25;UBERON:0000119!2.40e-10!312;UBERON:0000483!7.31e-10!309;UBERON:0002619!9.22e-10!22;UBERON:0007023!5.68e-09!115;UBERON:0000924!1.26e-08!173;UBERON:0006601!1.26e-08!173;UBERON:0003056!1.51e-08!61;UBERON:0004121!1.92e-08!169;UBERON:0000025!2.60e-08!194;UBERON:0000153!2.94e-08!129;UBERON:0007811!2.94e-08!129;UBERON:0001950!3.07e-08!20;UBERON:0000033!3.61e-08!123;UBERON:0000477!3.61e-08!286;UBERON:0004111!3.92e-08!241;UBERON:0002420!4.15e-08!9;UBERON:0007245!4.15e-08!9;UBERON:0010009!4.15e-08!9;UBERON:0010011!4.15e-08!9;UBERON:0000454!4.15e-08!9;UBERON:0002308!4.56e-07!9;UBERON:0000125!4.56e-07!9;UBERON:0003076!4.96e-07!15;UBERON:0003057!4.96e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0002242;1.78e-10;3!UBERON:0004905;1.39e-08;8!UBERON:0000982;1.39e-08;8!UBERON:0004770;1.39e-08;8!UBERON:0002619;9.13e-08;22!UBERON:0002791;2.23e-07;32!UBERON:0001869;2.23e-07;32!UBERON:0000956;7.66e-07;25!UBERON:0000203;7.66e-07;25!UBERON:0000349;8.88e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002242,3.47e-10,3;UBERON:0003068,3.47e-10,3;UBERON:0002328,3.47e-10,3;UBERON:0004880,3.47e-10,3;UBERON:0004905,1.98e-08,8;UBERON:0000982,1.98e-08,8;UBERON:0004770,1.98e-08,8;UBERON:0002619,7.73e-08,22;UBERON:0002791,1.92e-07,32;UBERON:0001869,1.92e-07,32;UBERON:0003528,5.48e-07,34;UBERON:0002020,5.48e-07,34;UBERON:0001893,5.48e-07,34;UBERON:0000349,6.30e-07,5;UBERON:0000956,6.63e-07,25;UBERON:0000203,6.63e-07,25 | |||
|phase1_expression=0.181678379270557,0.428201047781966,0.281908808191942,0,0,0.872338524100369,0,0,0.261185628199839,0,0,0,0,0.495065411840187,0.994192127183747,0.672325146451775,0.602694528023977,0.730310090387373,0.975865597581014,0.123121058076788,0,0.626909442956176,0.286235987131057,0.273748850145768,0.251085279189606,0.0764134057479513,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0.0774672005803016,0,0,0.553995408531877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.579386075843295,3.9764297352555,0.486634870302636,0,0.221729397462564,0.087834785693126,0.196468613246569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0.33472061276467,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0.506522046658319,0,0.286836620748814,0.709336764396714,0,0,0,0,0,0,0.302714855289863,0.576175924479999,0,0.624320153660641,0,0.448346041655403,0.117434498643765,0,0.140450806702248,0,0,1.34323515528495,0,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0,0,0.919463387397059,0,0.113432183160021,0,0.427114777637135,0.423863802319124,0,0.206105058476878,0.515281080091258,0.18611685633159,0.168776332241266,0.194874010322397,0.252433774244115,0.0920498986422993,0.646584227275248,0.710019185033229,0.302256294682921,0.169560592310488,0,0,0,0.121973706129595,0.132529768321485,0,0,0,0,0,1.92972281457866,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0.171567810298526,0.329250856225877,0,0.201057944823262,0.185176890317059,0,0,0,0,0,0.288732895522148,0,0.190254152234598,0,0,0,0,0,0,0,0,0.0895585227028483,0,0.383382679165211,0,0,0,0,0,0,0,0,0,0.411309970813294,0,0.571652865261156,0,0.87192013766656,0.36669142910475,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,1.62786481617433,0,0,0,0,0,0,0.199945982364114,0,0,0,0,1.14861935834114,0,0.289562613335158,0.61642896765115,0.179060963239896,0,0,0,0,1.77866236955724,0,1.54657762555539,0.335032530668698,0.637938751653163,0,0,0,1.2269149171914,0,1.08506009479894,0,1.42743191037729,0.315404830067869,0,0.300946099727719,0,1.03473071292505,0.664225598535437,0,0.260650843404249,0.979005787313703,2.40200396667599,0,0,0,0,0,0.30239029332968,0,0,0.280660094433074,0.768834895534206,0.511707249066704,0.482561763430822,1.48418066444991,0.154209693802656,0,0.0821271560138091,0.519254429183621,0,0,0.40101294060657,0.184161977871793,0,0.364182336013434,1.04899531967539,0.451199612907412,0.231046011313244,0,0,0.211103257785751,0,0,0,0,0,0.501689773854853,0,0,0,0,0,0,0,0,0,0,0.082509499920588,0,0.650060246036521,0,0.290012154876366,0,0.15350367472613,0,0.214840489736547,0.580066775656914,0.0852266274161009,0.0890320356467374,0.330569830721956,0,0,0.2023155617111,0,0.31481234683064,0,0,0.532306030317022,0,0.18532421910392,0,0,0,0,0.511795582622668,0.42793898803392,0,0,0.179872457583315,0.274537029736055,0.117812402345686,0.202182481573316,0,0,0,0.243713489631284,0,0.136499911407986,0.424216295861138,1.13008116620243,0,0.66343897524122,0,0,0.655894752046633,0.202910376962704,0,0.281695602532241,0.143411352204052,0,0,0,0.844430541190656,1.31717957183961,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0.228234679033192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.284136146806413,0,0,0,1.9882952955326,0.844016498463076,0.111308705022906,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.394573622547734,0,0,0.969332746095218,0.371072392647405,0,0.260427761085233,0,0.724999575434793,0.1137934482855,0,0,0.344743373241465,0,0.173624994933292,0.885741385813839,1.08536794762867,0,0.995213339381022,0.591095237907095,0,0,0,0.230850775511391,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.202203398942031,0.802577647298789,0,0,0,0.242780379534093,0,0,0.30607276163049,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0.193978032976839,0,0.451961481561065,0,0,0.253243183823515,0,0,0,0.19980960958213,0,0,0,0,0,0,0.135904206073614,0,0,0,0.600420288709789,0.273810757783986,0,0,0,0,0,0,0,0.858452096273142,0,0.0671834724867263,0.360299883542404,0,0,0,0,0.196854963029498,0,0.795229689809303,2.58786471611994,0,0,0,0,0,0.303747783290123,0,0.157611414598396,0.262272940674991,0,0.35857467866569,0,0,0,0,0.542999601753713,0.864221491201268,0.326587360109409,0,0,0.170388021785422,0,0.293104467356165,1.32506888912221,0.129282956361551,0.52893040697076,0,0,0.213574825135389,0.157204305099666,0,0,0,0,0,0,0,0,0,0,0,3.90484047686282,0.751145584238999,0.573409195690071,0.443716206147409,0.248385611765534,0,0,0,0,0,0.468334905806882,0,0,0,0,0.378806010550178,0.50313580350515,0,0.228840068396924,0.302461847526478,0,0.443565449968902,0.159296767163702,0,0.155262956876259,1.24411862352257,0.265841714557995,0,0.300515217994437,0.380805212168795,0,0.363697318405119,0.429642228169954,0,0.398095888698616,0.400027764663154,0.343395705182793,0,0,0,0.214441591374926,0,0.226705925512272,0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| ||
|short_description=p6@PCDHGC3 | |||
}} | }} |
Latest revision as of 04:48, 25 September 2015
Short description: | p6@PCDHGC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_PCDHGC3_5end |
Coexpression cluster: | NA |
Association with transcript: | 15bp_to_BC004321_5end |
EntrezGene: | PCDHGC3 |
HGNC: | 8716 |
UniProt: | Q9BT64 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nucleus pulposus cell of intervertebral disc | 3.47e-10 | 3 |
perirenal preadipocyte | 1.18e-08 | 1 |
smooth muscle cell of the pulmonary artery | 3.06e-08 | 1 |
Ontology term | p-value | n |
---|---|---|
nucleus pulposus | 3.47e-10 | 3 |
axial mesoderm | 3.47e-10 | 3 |
notochord | 3.47e-10 | 3 |
chordamesoderm | 3.47e-10 | 3 |
articulation | 1.98e-08 | 8 |
skeletal joint | 1.98e-08 | 8 |
articular system | 1.98e-08 | 8 |
regional part of cerebral cortex | 7.73e-08 | 22 |
regional part of telencephalon | 1.92e-07 | 32 |
cerebral hemisphere | 1.92e-07 | 32 |
brain grey matter | 5.48e-07 | 34 |
gray matter | 5.48e-07 | 34 |
telencephalon | 5.48e-07 | 34 |
limbic system | 6.30e-07 | 5 |
cerebral cortex | 6.63e-07 | 25 |
pallium | 6.63e-07 | 25 |