FFCP PHASE1:Hg19::chr7:101917447..101917479,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:101917447..101917479,+
|short_description=p4@CUX1
|description=CAGE_peak_4_at_CUX1_5end
|association_with_transcript=2bp_to_uc003uyz.2_5end
|EntrezGene=15...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1523 | |EntrezGene=1523 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2557 | |HGNC=2557 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=2bp_to_uc003uyz.2_5end | |||
|cluster_id=chr7:101917447..101917479,+ | |||
|coexpression_cluster_id=C4636 | |||
|description=CAGE_peak_4_at_CUX1_5end | |||
|id=chr7:101917447..101917479,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.58e-32!254;CL:0000223!1.22e-09!59;CL:0000077!1.32e-09!19;CL:0000076!6.04e-09!62;CL:0000548!3.56e-08!679;CL:0000004!3.56e-08!679;CL:0000255!3.56e-08!679;CL:0000012!5.72e-08!682;CL:0002076!2.48e-07!43;CL:0000082!8.62e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0000077;1.21e-08;19!CL:0000083;4.49e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.44e-28,253;CL:0000076,1.69e-09,63;CL:0000077,1.02e-08,19;CL:0000083,6.19e-07,4;CL:0000223,9.23e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.11e-21;29!UBERON:0001041;5.19e-12;30!UBERON:0009497;1.22e-07;13 | |||
|ontology_enrichment_disease=DOID:305!3.27e-41!106;DOID:0050687!1.18e-33!143;DOID:14566!5.61e-26!239;DOID:162!1.84e-25!235;DOID:1749!5.68e-15!14;DOID:7!1.21e-08!39;DOID:299!1.25e-08!25;DOID:0050615!1.82e-08!16;DOID:1324!8.49e-08!15 | |||
|ontology_enrichment_disease_v019=DOID:1749;7.30e-13;14!DOID:305;8.74e-12;106!DOID:0050687;2.01e-08;143!DOID:1793;4.49e-07;4!DOID:1324;5.45e-07;15!DOID:4074;6.65e-07;2!DOID:4905;6.65e-07;2!DOID:3498;6.65e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.93e-44,106;DOID:0050687,7.00e-35,143;DOID:162,8.82e-27,235;DOID:14566,6.04e-26,239;DOID:1749,6.89e-13,14;DOID:1324,5.29e-07,15;DOID:1793,6.19e-07,4;DOID:4074,7.40e-07,2;DOID:4905,7.40e-07,2;DOID:3498,7.40e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.38e-19!169;UBERON:0000925!2.38e-19!169;UBERON:0006595!2.38e-19!169;UBERON:0001007!1.22e-18!155;UBERON:0001555!1.22e-18!155;UBERON:0007026!1.22e-18!155;UBERON:0004921!1.28e-16!129;UBERON:0004185!1.28e-16!129;UBERON:0000077!6.64e-16!130;UBERON:0000072!2.72e-15!46;UBERON:0008947!1.35e-14!38;UBERON:0003258!1.35e-14!38;UBERON:0001737!2.39e-14!9;UBERON:0000065!3.94e-14!53;UBERON:0001004!2.42e-13!72;UBERON:0001041!1.73e-11!98;UBERON:0005911!3.64e-10!82;UBERON:0000466!6.45e-10!126;UBERON:0000344!1.56e-09!12;UBERON:0003104!2.48e-09!238;UBERON:0009142!2.48e-09!238;UBERON:0001557!6.27e-09!19;UBERON:0000464!8.38e-09!104;UBERON:0005177!4.64e-08!107;UBERON:0001048!6.51e-08!168;UBERON:0000063!1.38e-07!97;UBERON:0000481!3.79e-07!347;UBERON:0005153!4.17e-07!37;UBERON:0004802!8.62e-07!19;UBERON:0000115!8.62e-07!19;UBERON:0003929!8.68e-07!54 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.52e-28;9!UBERON:0001557;3.52e-28;9!UBERON:0000072;2.12e-18;37!UBERON:0000065;1.41e-12;44!UBERON:0001004;1.43e-08;65!UBERON:0005911;9.82e-07;36 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.52e-28,9;UBERON:0008947,1.25e-17,38;UBERON:0003258,1.25e-17,38;UBERON:0000072,3.26e-15,47;UBERON:0001041,3.27e-14,87;UBERON:0004921,7.79e-14,118;UBERON:0001007,6.06e-13,145;UBERON:0001555,6.06e-13,145;UBERON:0007026,6.06e-13,145;UBERON:0004119,6.67e-13,160;UBERON:0000925,6.67e-13,160;UBERON:0006595,6.67e-13,160;UBERON:0000065,1.16e-12,54;UBERON:0001557,2.62e-12,19;UBERON:0001004,1.63e-10,74;UBERON:0005911,3.00e-08,82;UBERON:0005177,1.50e-07,101;UBERON:0001048,4.60e-07,160 | |||
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| ||
|short_description=p4@CUX1 | |||
}} | }} |
Latest revision as of 18:37, 24 September 2015
Short description: | p4@CUX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_CUX1_5end |
Coexpression cluster: | C4636_squamous_oral_Hep2_epidermoid_mesothelioma_mucinous_ductal |
Association with transcript: | 2bp_to_uc003uyz.2_5end |
EntrezGene: | CUX1 |
HGNC: | 2557 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.44e-28 | 253 |
squamous epithelial cell | 1.69e-09 | 63 |
mesothelial cell | 1.02e-08 | 19 |
epithelial cell of pancreas | 6.19e-07 | 4 |
endodermal cell | 9.23e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.52e-28 | 9 |
respiratory primordium | 1.25e-17 | 38 |
endoderm of foregut | 1.25e-17 | 38 |
segment of respiratory tract | 3.26e-15 | 47 |
foregut | 3.27e-14 | 87 |
subdivision of digestive tract | 7.79e-14 | 118 |
digestive system | 6.06e-13 | 145 |
digestive tract | 6.06e-13 | 145 |
primitive gut | 6.06e-13 | 145 |
endoderm-derived structure | 6.67e-13 | 160 |
endoderm | 6.67e-13 | 160 |
presumptive endoderm | 6.67e-13 | 160 |
respiratory tract | 1.16e-12 | 54 |
upper respiratory tract | 2.62e-12 | 19 |
respiratory system | 1.63e-10 | 74 |
endo-epithelium | 3.00e-08 | 82 |
trunk region element | 1.50e-07 | 101 |
primordium | 4.60e-07 | 160 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.93e-44 | 106 |
cell type cancer | 7.00e-35 | 143 |
cancer | 8.82e-27 | 235 |
disease of cellular proliferation | 6.04e-26 | 239 |
squamous cell carcinoma | 6.89e-13 | 14 |
lung cancer | 5.29e-07 | 15 |
pancreatic cancer | 6.19e-07 | 4 |
pancreas adenocarcinoma | 7.40e-07 | 2 |
pancreatic carcinoma | 7.40e-07 | 2 |
pancreatic ductal adenocarcinoma | 7.40e-07 | 2 |