FFCP PHASE1:Hg19::chr13:28543253..28543276,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1045 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1806 | |||
|TSSclassifier=strong | |||
|UniProt=Q99626 | |||
|association_with_transcript=40bp_to_NM_001265,uc001urv.2_5end | |||
|cluster_id=chr13:28543253..28543276,- | |||
|coexpression_cluster_id=C86 | |||
|description=CAGE_peak_5_at_CDX2_5end | |||
|id=chr13:28543253..28543276,- | |||
|ontology_enrichment_celltype=CL:0000453!1.23e-08!5;CL:0002322!1.31e-08!5;CL:0002563!9.32e-08!4;CL:0002253!2.35e-07!2;CL:0000990!3.98e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002563;9.77e-21;4!CL:0002253;8.03e-19;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.01e-20,4;CL:0002253,8.40e-19,2 | |||
|ontology_enrichment_development_v019=UBERON:0001045;3.25e-10;1 | |||
|ontology_enrichment_disease=DOID:305!5.09e-14!106;DOID:3119!3.29e-12!14;DOID:0050687!2.85e-11!143;DOID:299!8.31e-08!25;DOID:162!2.77e-07!235;DOID:4929!5.71e-07!2;DOID:14566!5.88e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:3151;8.99e-10;1!DOID:3149;8.99e-10;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,9.82e-10,1;DOID:3149,9.82e-10,1 | |||
|ontology_enrichment_uberon=UBERON:0005409!7.59e-35!35;UBERON:0000160!2.27e-34!27;UBERON:0002108!1.22e-17!14;UBERON:0000059!3.15e-17!11;UBERON:0004907!1.05e-15!5;UBERON:0004921!2.51e-14!129;UBERON:0004185!2.51e-14!129;UBERON:0001007!2.33e-13!155;UBERON:0001555!2.33e-13!155;UBERON:0007026!2.33e-13!155;UBERON:0002114!6.29e-13!12;UBERON:0001052!6.89e-13!4;UBERON:0001155!3.03e-12!9;UBERON:0001045!5.86e-12!11;UBERON:0004119!1.58e-11!169;UBERON:0000925!1.58e-11!169;UBERON:0006595!1.58e-11!169;UBERON:0002075!9.84e-11!18;UBERON:0003350!7.40e-10!5;UBERON:0001264!1.11e-09!10;UBERON:0003922!1.11e-09!10;UBERON:0003923!1.11e-09!10;UBERON:0003924!1.11e-09!10;UBERON:0003921!1.11e-09!10;UBERON:0000077!9.67e-09!130;UBERON:0001242!9.32e-08!4;UBERON:0001262!9.32e-08!4;UBERON:0004786!9.32e-08!4;UBERON:0004808!9.32e-08!4;UBERON:0001277!9.32e-08!4;UBERON:0004458!1.50e-07!49;UBERON:0002323!5.94e-07!46;UBERON:0001046!7.69e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0000160;1.08e-68;17!UBERON:0005409;2.29e-53;22!UBERON:0000059;1.92e-50;11!UBERON:0004907;9.64e-44;5!UBERON:0001155;2.58e-35;9!UBERON:0001052;2.60e-35;4!UBERON:0004921;2.44e-32;33!UBERON:0001242;9.77e-21;4!UBERON:0001262;9.77e-21;4!UBERON:0004786;9.77e-21;4!UBERON:0004808;9.77e-21;4!UBERON:0001277;9.77e-21;4!UBERON:0002108;1.49e-16;4!UBERON:0000485;4.24e-12;7!UBERON:0003929;4.24e-12;7!UBERON:0001555;5.53e-12;54!UBERON:0003350;1.19e-10;8!UBERON:0001154;3.25e-10;1!UBERON:0001153;3.25e-10;1!UBERON:0009854;3.25e-10;1!UBERON:0001007;6.93e-10;81!UBERON:0009856;1.52e-09;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.08e-68,17;UBERON:0000059,1.86e-50,11;UBERON:0005409,5.38e-47,25;UBERON:0004907,9.22e-44,5;UBERON:0001155,2.58e-35,9;UBERON:0001052,2.60e-35,4;UBERON:0001242,1.01e-20,4;UBERON:0001262,1.01e-20,4;UBERON:0004786,1.01e-20,4;UBERON:0004808,1.01e-20,4;UBERON:0001277,1.01e-20,4;UBERON:0002108,1.53e-16,4;UBERON:0001046,2.85e-16,19;UBERON:0004921,3.33e-16,118;UBERON:0001007,1.07e-12,145;UBERON:0001555,1.07e-12,145;UBERON:0007026,1.07e-12,145;UBERON:0004119,2.97e-11,160;UBERON:0000925,2.97e-11,160;UBERON:0006595,2.97e-11,160;UBERON:0003350,1.21e-10,8;UBERON:0001154,3.10e-10,1;UBERON:0001153,3.10e-10,1;UBERON:0001045,3.10e-10,1;UBERON:0000485,1.62e-09,9;UBERON:0011216,2.78e-08,223 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0.348581828608555,0.310983165046111,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.9137860470269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.66875596732978,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.515205058238611,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0.963528450622197,0,0,0,0,0,0,0,0,0,0,0,0,1.30998378285754,0,0,0,1.13654458722565,0,0,0,0,0,0,0,0,0,8.84108529699673,3.02319297425131,0,0,0,0,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.54323685961004,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23006364305581,50.4185530599072,22.8910244148056,10.5264501758974,40.3279895656193,0,0,0,0,0,0,0,0.19566461893209,0,0,3.62972148145992,0,0,0.450970258243478,0.518440956986236,0.664653872707185,0.661983911750998,0.313932918407225,2.38944859545918,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160317640503067,0.426905989478705,0.999048047910651,0.864542502924636,0.687219576995494,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,5.82479747637269,0,0,0,0.196854963029498,0,0,0,0,0,0,0.2249738915515,0,0,2.0126081255956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.55336503108073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.132864840313363,0.817826971279221,0,0.491545817507439,0,0,0.426766918776564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471878893390961,0,0,0,0.690359926060101,0,0,0,0,0,0,0.739280431085226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.5673484094723,3.65263488203798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0.485710993059139,0,0,0.118920090777569,3.9531128713636,0,0,11.4217753999758,8.30526329915038,0,0,0.942706188406504,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0.788857810965923,0,0,6.34832208618481,0,0,0,0,0,0,0.101988829741982,0.26721740526556,0.18378979906969,0,0,0.267964130156178,0,0,0,0,0.0645889098360061,0,0,0,0,0,0,0,0,0,0.162806537221949,0,0,4.58108530743593,0,0,0,0,0.201273793591026,0 | |||
|short_description=p5@CDX2 | |||
}} |
Latest revision as of 23:38, 16 September 2015
Short description: | p5@CDX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_CDX2_5end |
Coexpression cluster: | C86_colon_carcinoid_small_neuroectodermal_giant_large_neuroepithelioma |
Association with transcript: | 40bp_to_NM_001265, uc001urv.2_5end |
EntrezGene: | CDX2 |
HGNC: | 1806 |
UniProt: | Q99626 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.01e-20 | 4 |
epithelial cell of large intestine | 8.40e-19 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.08e-68 | 17 |
large intestine | 1.86e-50 | 11 |
gastrointestinal system | 5.38e-47 | 25 |
lower digestive tract | 9.22e-44 | 5 |
colon | 2.58e-35 | 9 |
rectum | 2.60e-35 | 4 |
intestinal mucosa | 1.01e-20 | 4 |
wall of intestine | 1.01e-20 | 4 |
gastrointestinal system mucosa | 1.01e-20 | 4 |
gastrointestinal system epithelium | 1.01e-20 | 4 |
intestinal epithelium | 1.01e-20 | 4 |
small intestine | 1.53e-16 | 4 |
hindgut | 2.85e-16 | 19 |
subdivision of digestive tract | 3.33e-16 | 118 |
digestive system | 1.07e-12 | 145 |
digestive tract | 1.07e-12 | 145 |
primitive gut | 1.07e-12 | 145 |
endoderm-derived structure | 2.97e-11 | 160 |
endoderm | 2.97e-11 | 160 |
presumptive endoderm | 2.97e-11 | 160 |
epithelium of mucosa | 1.21e-10 | 8 |
vermiform appendix | 3.10e-10 | 1 |
caecum | 3.10e-10 | 1 |
midgut | 3.10e-10 | 1 |
simple columnar epithelium | 1.62e-09 | 9 |
organ system subdivision | 2.78e-08 | 223 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 9.82e-10 | 1 |
keratoacanthoma | 9.82e-10 | 1 |