FFCP PHASE1:Hg19::chr13:93372213..93372253,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=39886 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000451897_5end | |||
|cluster_id=chr13:93372213..93372253,- | |||
|coexpression_cluster_id=C94 | |||
|description=CAGE_peak_1_at_GPC5-AS1_5end | |||
|id=chr13:93372213..93372253,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000167;3.54e-13;1!CL:0000164;3.54e-13;1!CL:0000502;3.54e-13;1!CL:0000172;3.54e-13;1!CL:0000173;3.54e-13;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000167,4.23e-13,1;CL:0000164,4.23e-13,1;CL:0000502,4.23e-13,1;CL:0000172,4.23e-13,1;CL:0000173,4.23e-13,1;CL:0002351,4.23e-13,1 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.32e-16;3!CL:0002351;3.54e-13;1!UBERON:0010115;7.24e-13;1!UBERON:0005425;7.24e-13;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;2.05e-13;1!DOID:4549;2.05e-13;1!DOID:5861;2.05e-13;1!DOID:6496;2.05e-13;1!DOID:4430;3.54e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.06e-13,1;DOID:4549,2.06e-13,1;DOID:5861,2.06e-13,1;DOID:6496,2.06e-13,1;DOID:4430,4.23e-13,1 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.04e-23!86;UBERON:0001017!4.86e-23!82;UBERON:0000073!1.02e-22!94;UBERON:0001016!1.02e-22!94;UBERON:0003075!4.14e-22!86;UBERON:0007284!4.14e-22!86;UBERON:0003076!1.41e-21!15;UBERON:0003057!1.41e-21!15;UBERON:0001049!6.33e-21!57;UBERON:0005068!6.33e-21!57;UBERON:0006241!6.33e-21!57;UBERON:0007135!6.33e-21!57;UBERON:0002346!7.80e-21!90;UBERON:0007023!2.45e-19!115;UBERON:0004732!3.83e-16!13;UBERON:0004121!9.32e-15!169;UBERON:0000924!3.10e-14!173;UBERON:0006601!3.10e-14!173;UBERON:0000955!3.52e-14!69;UBERON:0006238!3.52e-14!69;UBERON:0002616!4.29e-14!59;UBERON:0004733!2.07e-13!12;UBERON:0002028!2.07e-13!12;UBERON:0007277!2.07e-13!12;UBERON:0000153!2.23e-13!129;UBERON:0007811!2.23e-13!129;UBERON:0000033!7.96e-12!123;UBERON:0001896!1.55e-11!3;UBERON:0005290!1.55e-11!3;UBERON:0010096!1.55e-11!3;UBERON:0002240!2.05e-11!3;UBERON:0002298!1.03e-10!8;UBERON:0003056!8.08e-09!61;UBERON:0002360!1.24e-08!2;UBERON:0000094!1.24e-08!2;UBERON:0007645!1.24e-08!2;UBERON:0000341!2.14e-08!2;UBERON:0005162!6.43e-08!2;UBERON:0000122!6.43e-08!2;UBERON:0002780!1.44e-07!41;UBERON:0001890!1.44e-07!41;UBERON:0006240!1.44e-07!41;UBERON:0003127!1.47e-07!2;UBERON:0003080!2.43e-07!42;UBERON:0005174!5.31e-07!5;UBERON:0001137!5.31e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002360;2.96e-24;2!UBERON:0000094;2.96e-24;2!UBERON:0010743;2.96e-24;2!UBERON:0002363;7.24e-13;1!UBERON:0000941;7.24e-13;1!UBERON:0001785;7.24e-13;1!UBERON:0002464;7.24e-13;1!UBERON:0004904;7.24e-13;1!UBERON:0001021;7.24e-13;1!UBERON:0000341;3.18e-07;2!UBERON:0001905;3.18e-07;2!UBERON:0002757;3.18e-07;2!UBERON:0010134;3.18e-07;2!UBERON:0005408;3.18e-07;2!UBERON:0001899;3.18e-07;2!UBERON:0003714;4.55e-07;2!UBERON:0005162;4.55e-07;2!UBERON:0000122;4.55e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002360,1.85e-24,2;UBERON:0000094,1.85e-24,2;UBERON:0010743,1.85e-24,2;UBERON:0002363,4.77e-13,1;UBERON:0007645,4.77e-13,1;UBERON:0007647,4.77e-13,1;UBERON:0010115,4.77e-13,1;UBERON:0000941,6.82e-13,1;UBERON:0001785,6.82e-13,1;UBERON:0002464,6.82e-13,1;UBERON:0004904,6.82e-13,1;UBERON:0001021,6.82e-13,1;UBERON:0003902,6.82e-13,1;UBERON:0005425,6.82e-13,1;UBERON:0000966,8.91e-09,6;UBERON:0005388,8.91e-09,6;UBERON:0001802,8.91e-09,6;UBERON:0001905,2.91e-07,2;UBERON:0002757,2.91e-07,2;UBERON:0010134,2.91e-07,2;UBERON:0005408,2.91e-07,2;UBERON:0001899,2.91e-07,2;UBERON:0000341,3.28e-07,2;UBERON:0003714,4.42e-07,2;UBERON:0005162,4.42e-07,2;UBERON:0000122,4.42e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995213339381022,0.295547618953547,2.4132393686937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134802265961354,0.802577647298789,0,0,0,0,0,4.83962864194656,0,1.89559738885464,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,6.00141661502202,0.225980740780532,0,0,0.253243183823515,0,0,0,0,0,0,7.55017990592644,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223171457441873,0,0,0,0,0,0,0,0,0,0,0,0.137539436597234,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258565912723101,0,0,0,0.106787412567695,1.25763444079733,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14681839138014,0.998361463831671,0.372578417648301,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159633859057151,0,0.252071696221718,0.138314504928436,0.161475645631851,1.42769420259154,0,0,0,0,0,0,0,0,0,1.56302802246618,0,0,0,0.135075169236789,0,0,0,0,0,0,0,0,2.67850917939143,0,0.606965604236632,0,0,0,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,3.07349139959622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0.485710993059139,0.233939463462106,0,0,0,0,0,0,0,16.9314226690148,0,2.12108892391463,0.392616934229891,0.297046400327086,1.2679671827502,0,0,0,0,0,0,0,0,0,0,0,0,0.436350690340377,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.426467963801962,2.14257988317366,0,0,0,0,0.202117188958219,0,0.342233301085281,0,0.0717222053926763,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@GPC5-AS1 | |||
}} |
Latest revision as of 04:44, 18 September 2015
Short description: | p1@GPC5-AS1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPC5-AS1_5end |
Coexpression cluster: | C94_smallcell_adrenal_lung_nonsmall_small_somatostatinoma_teratocarcinoma |
Association with transcript: | 0bp_to_ENST00000451897_5end |
EntrezGene: | NA |
HGNC: | 39886 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
peptide hormone secreting cell | 4.23e-13 | 1 |
enteroendocrine cell | 4.23e-13 | 1 |
type D enteroendocrine cell | 4.23e-13 | 1 |
somatostatin secreting cell | 4.23e-13 | 1 |
pancreatic D cell | 4.23e-13 | 1 |
progenitor cell of endocrine pancreas | 4.23e-13 | 1 |
Ontology term | p-value | n |
---|---|---|
meninx | 1.85e-24 | 2 |
membrane organ | 1.85e-24 | 2 |
meningeal cluster | 1.85e-24 | 2 |
dura mater | 4.77e-13 | 1 |
future meninx | 4.77e-13 | 1 |
ectomeninx | 4.77e-13 | 1 |
future dura mater | 4.77e-13 | 1 |
cranial nerve II | 6.82e-13 | 1 |
cranial nerve | 6.82e-13 | 1 |
nerve trunk | 6.82e-13 | 1 |
nerve connecting eye with brain | 6.82e-13 | 1 |
nerve | 6.82e-13 | 1 |
retinal neural layer | 6.82e-13 | 1 |
presumptive neural retina | 6.82e-13 | 1 |
retina | 8.91e-09 | 6 |
photoreceptor array | 8.91e-09 | 6 |
posterior segment of eyeball | 8.91e-09 | 6 |
pineal body | 2.91e-07 | 2 |
regional part of epithalamus | 2.91e-07 | 2 |
secretory circumventricular organ | 2.91e-07 | 2 |
circumventricular organ | 2.91e-07 | 2 |
epithalamus | 2.91e-07 | 2 |
throat | 3.28e-07 | 2 |
neural tissue | 4.42e-07 | 2 |
multi cell component structure | 4.42e-07 | 2 |
neuron projection bundle | 4.42e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.06e-13 | 1 |
extraosseous chondrosarcoma | 2.06e-13 | 1 |
myxoid chondrosarcoma | 2.06e-13 | 1 |
extraskeletal myxoid chondrosarcoma | 2.06e-13 | 1 |
somatostatinoma | 4.23e-13 | 1 |