FFCP PHASE1:Hg19::chr1:111023361..111023366,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=2588 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-7bp_to_ENST00000474680_5end | |||
|cluster_id=chr1:111023361..111023366,+ | |||
|coexpression_cluster_id=C228 | |||
|description=CAGE_peak_1_at_CYMP_5end | |||
|id=chr1:111023361..111023366,+ | |||
|ontology_enrichment_celltype=CL:0002322!6.67e-36!5;CL:0002174!2.82e-21!1;CL:0000501!2.82e-21!1;CL:0002563!3.82e-21!4;CL:0000148!2.33e-18!10;CL:0000541!2.33e-18!10;CL:0000147!2.56e-13!14;CL:0002253!1.82e-11!2;CL:0000710!1.62e-09!20;CL:0002231!5.18e-08!3;CL:0000174!5.54e-08!3;CL:0000075!3.37e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0002563;2.40e-66;4!CL:0002253;3.61e-34;2!CL:0002231;4.09e-23;3!CL:0002076;8.69e-16;42!CL:0002251;2.41e-14;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.40e-66,4;CL:0002253,3.61e-34,2;CL:0002231,4.09e-23,3;CL:0002076,3.52e-15,42;CL:0002251,2.41e-14,20;CL:0000223,2.67e-11,58 | |||
|ontology_enrichment_development_v019=CL:0000223;2.55e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001242!3.82e-21!4;UBERON:0001262!3.82e-21!4;UBERON:0004786!3.82e-21!4;UBERON:0004808!3.82e-21!4;UBERON:0001277!3.82e-21!4;UBERON:0003350!3.95e-17!5;UBERON:0000485!5.93e-10!9;UBERON:0000344!1.09e-07!12;UBERON:0000060!1.09e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;2.40e-66;4!UBERON:0001262;2.40e-66;4!UBERON:0004786;2.40e-66;4!UBERON:0004808;2.40e-66;4!UBERON:0001277;2.40e-66;4!UBERON:0000485;1.49e-38;7!UBERON:0003929;1.49e-38;7!UBERON:0003350;6.50e-34;8!UBERON:0001052;7.35e-18;4!UBERON:0000160;8.40e-16;17!UBERON:0004907;1.40e-14;5!UBERON:0000344;2.41e-14;20!UBERON:0005409;1.25e-12;22!UBERON:0004921;2.68e-09;33!UBERON:0001155;1.04e-08;9!UBERON:0005911;1.21e-08;36!UBERON:0000490;1.21e-08;33!UBERON:0000059;2.32e-07;11!UBERON:0002367;2.63e-07;11!UBERON:0010147;2.63e-07;11!UBERON:0003937;8.38e-07;12!UBERON:0005399;8.38e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001242,2.40e-66,4;UBERON:0001262,2.40e-66,4;UBERON:0004786,2.40e-66,4;UBERON:0004808,2.40e-66,4;UBERON:0001277,2.40e-66,4;UBERON:0003350,6.50e-34,8;UBERON:0000485,2.66e-30,9;UBERON:0001052,7.35e-18,4;UBERON:0000160,8.40e-16,17;UBERON:0001046,5.27e-15,19;UBERON:0004907,1.40e-14,5;UBERON:0000344,2.41e-14,20;UBERON:0003929,4.68e-12,54;UBERON:0005409,2.63e-11,25;UBERON:0001155,1.04e-08,9;UBERON:0005911,2.70e-08,82;UBERON:0000059,2.32e-07,11;UBERON:0002367,2.63e-07,11;UBERON:0010147,2.63e-07,11;UBERON:0009846,2.63e-07,11;UBERON:0003353,2.63e-07,11;UBERON:0004902,2.63e-07,11;UBERON:0003820,2.63e-07,11;UBERON:0009847,2.63e-07,11;UBERON:0003937,8.38e-07,12;UBERON:0005399,8.38e-07,12 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0.207322110030741,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.76436411987125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.65890789101569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.0360680718098,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p1@CYMP | |||
}} |
Latest revision as of 00:56, 16 September 2015
Short description: | p1@CYMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CYMP_5end |
Coexpression cluster: | C228_colon_Intestinal_Prostate_hepatoblastoma_hepatocellular_testis_adult |
Association with transcript: | -7bp_to_ENST00000474680_5end |
EntrezGene: | NA |
HGNC: | 2588 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.40e-66 | 4 |
epithelial cell of large intestine | 3.61e-34 | 2 |
epithelial cell of prostate | 4.09e-23 | 3 |
endo-epithelial cell | 3.52e-15 | 42 |
epithelial cell of alimentary canal | 2.41e-14 | 20 |
endodermal cell | 2.67e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
intestinal mucosa | 2.40e-66 | 4 |
wall of intestine | 2.40e-66 | 4 |
gastrointestinal system mucosa | 2.40e-66 | 4 |
gastrointestinal system epithelium | 2.40e-66 | 4 |
intestinal epithelium | 2.40e-66 | 4 |
epithelium of mucosa | 6.50e-34 | 8 |
simple columnar epithelium | 2.66e-30 | 9 |
rectum | 7.35e-18 | 4 |
intestine | 8.40e-16 | 17 |
hindgut | 5.27e-15 | 19 |
lower digestive tract | 1.40e-14 | 5 |
mucosa | 2.41e-14 | 20 |
gut epithelium | 4.68e-12 | 54 |
gastrointestinal system | 2.63e-11 | 25 |
colon | 1.04e-08 | 9 |
endo-epithelium | 2.70e-08 | 82 |
large intestine | 2.32e-07 | 11 |
prostate gland | 2.63e-07 | 11 |
male accessory sex gland | 2.63e-07 | 11 |
embryonic cloacal epithelium | 2.63e-07 | 11 |
epithelium of hindgut | 2.63e-07 | 11 |
urogenital sinus epithelium | 2.63e-07 | 11 |
prostate bud | 2.63e-07 | 11 |
prostate field | 2.63e-07 | 11 |
sex gland | 8.38e-07 | 12 |
male reproductive gland | 8.38e-07 | 12 |