FFCP PHASE1:Hg19::chr20:36758111..36758125,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7052 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=11778 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=295bp_to_M98479_5end | |||
|cluster_id=chr20:36758111..36758125,- | |||
|description=CAGE_peak_20_at_TGM2_5end | |||
|id=chr20:36758111..36758125,- | |||
|ontology_enrichment_celltype=CL:0000115!1.62e-10!35;CL:0000222!7.78e-09!119;CL:0002078!7.97e-09!44;CL:0002139!1.58e-08!24;CL:0000192!2.27e-08!42;CL:0000514!2.27e-08!42;CL:1000413!7.92e-08!9 | |||
|ontology_enrichment_celltype_v019=CL:0000349;3.07e-25;19!CL:0002577;1.52e-16;3!CL:0002195;7.46e-11;2!CL:0002571;7.46e-11;2!CL:0002188;1.88e-09;5!CL:0002541;8.75e-08;3!CL:1000746;7.08e-07;7!CL:1000612;7.08e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,2.24e-25,19;CL:0002577,7.97e-17,3;CL:0002195,2.24e-10,2;CL:0002571,2.24e-10,2;CL:0002188,1.65e-09,5;CL:0002541,7.79e-08,3;CL:0000115,1.07e-07,36;CL:1000746,6.47e-07,7;CL:1000612,6.47e-07,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002049!4.57e-19!79;UBERON:0007798!4.57e-19!79;UBERON:0003914!3.82e-17!118;UBERON:0004872!3.51e-15!84;UBERON:0000055!1.03e-14!69;UBERON:0004535!6.24e-14!110;UBERON:0001009!8.29e-14!113;UBERON:0001981!4.56e-13!60;UBERON:0007500!4.56e-13!60;UBERON:0004537!4.56e-13!60;UBERON:0006965!4.56e-13!60;UBERON:0000477!4.54e-12!286;UBERON:0001637!9.77e-12!42;UBERON:0003509!9.77e-12!42;UBERON:0004572!9.77e-12!42;UBERON:0005631!3.22e-10!14;UBERON:0000158!3.22e-10!14;UBERON:0004111!3.48e-10!241;UBERON:0003124!1.56e-09!7;UBERON:0000478!2.69e-09!24;UBERON:0000926!3.14e-09!448;UBERON:0004120!3.14e-09!448;UBERON:0006603!3.14e-09!448;UBERON:0000490!4.86e-09!138;UBERON:0000119!2.20e-08!312;UBERON:0005256!2.26e-08!143;UBERON:0000483!2.84e-08!309;UBERON:0000468!3.31e-08!659;UBERON:0004573!3.89e-08!33;UBERON:0004571!3.89e-08!33;UBERON:0003064!4.27e-08!37;UBERON:0006554!6.09e-08!44;UBERON:0003915!7.92e-08!9;UBERON:0004700!7.92e-08!9;UBERON:0001917!7.92e-08!9;UBERON:0001008!1.28e-07!45;UBERON:0000025!1.75e-07!194;UBERON:0002100!1.78e-07!216;UBERON:0003081!2.98e-07!216;UBERON:0000467!5.72e-07!625;UBERON:0000480!6.79e-07!626;UBERON:0004923!9.88e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0000478;7.49e-24;24!UBERON:0005631;9.35e-13;10!UBERON:0000158;9.35e-13;10!UBERON:0001987;1.56e-12;4!UBERON:0003124;8.75e-08;3!UBERON:0000920;8.75e-08;3!UBERON:0000305;3.26e-07;7!UBERON:0003513;4.82e-07;7!UBERON:0000074;7.08e-07;7!UBERON:0001229;7.08e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000478,5.45e-24,24;UBERON:0005631,9.07e-23,14;UBERON:0000158,9.07e-23,14;UBERON:0003124,8.61e-19,7;UBERON:0001987,9.65e-13,4;UBERON:0004340,9.65e-13,4;UBERON:0003914,4.90e-11,117;UBERON:0003081,5.02e-09,203;UBERON:0000920,7.79e-08,3;UBERON:0004872,9.88e-08,83;UBERON:0004923,2.08e-07,66;UBERON:0000305,3.52e-07,7;UBERON:0003513,5.83e-07,7;UBERON:0010532,6.47e-07,7;UBERON:0000074,6.47e-07,7;UBERON:0001229,6.47e-07,7;UBERON:0001230,6.47e-07,7;UBERON:0003220,6.47e-07,7;UBERON:0005749,6.47e-07,7;UBERON:0004199,6.47e-07,7;UBERON:0004209,6.47e-07,7;UBERON:0004198,6.47e-07,7 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.140954404095971,2.00146596706261,0,0,2.53299878168311,0,0,0,1.39560233594486,0.873765488520689,2.11013582582763,0,0,0,0,0,0.487932798790507,0,0.408001382488506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0,0,0,0.189069634328136,1.55210578223795,0.87834785693126,0.130979075497713,0,0,0,0.174129737299267,0.664789802594326,0,0,0,0.198762407366705,1.72046919021225,0.347140501607594,0.56530794192401,0.838998872419812,1.10047216776027,0.835979866147242,0.775250277507987,0,0.33472061276467,1.20848795132744,0,0,0,1.62028389576352,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0.633152558322899,0.132409180813219,0.286836620748814,0,0,0,0.98667019366864,0,0,0.163461903113459,0.151357427644931,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0.612975591598039,0.150238058906597,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10075209822764,0,0.193260853163297,0,0,0,0,0,0,0,0,0,1.28648187638577,0,0,0,0,0,0.241011029883482,0,0.435758888184812,0,0,0,0,2.21446636387394,0,0,0,1.26755034821831,0,0,0,0.245976877086227,0.686271241194102,0,0,0,0,0,0,0,0,0,0.288732895522148,0.925971025153221,0.761016608938393,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0,0,0.383382679165211,0,0,0.207328115540772,0,0,0,0.381988425558278,0,0,0,0,0,0,0.43596006883328,0,0.258543431515556,0,0,1.32969058292435,2.08014873822732,0.257207374262142,0,0,1.00084595560703,1.08524321078289,0,0,1.06617584622764,1.58390374586686,0,0,0.099972991182057,1.2162378064119,0,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.892144943985809,0,0.234282829985426,0,2.27407504055985,0,0,0,0,0.195801157462741,0,0,0,0,1.81876542867756,6.65741758041988,3.32629322662648,0.496215615637554,0,0.280660094433074,0,0,0.160853921143607,0,0.154209693802656,0.355123450626254,0,0,0,0.120859449591622,0.200506470303285,0,0.229628896329213,0.364182336013434,0.786746489756545,0.451199612907412,0.15403067420883,0,0,0.105551628892876,1.13733384070897,0.340187410553031,0.215915916102139,1.54227252690289,0.270946437543853,0,0,0.831076008928724,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0.330569830721956,0,0,0,0.929691098594572,0,0,0,0.532306030317022,0,1.66791797193528,0,0,0.949138274156178,0.38126038784765,0,0,0,0,0.179872457583315,0.823611089208164,0.353437207037059,0.808729926293264,4.75530963519025,0,0,0.243713489631284,1.05650146756755,0.409499734223957,0.989838023675989,0,0,1.32687795048244,0.876901770507525,0,0.655894752046633,0,0.30982349809975,0.563391205064483,0.286822704408103,0.0982490410131212,0.35667105148125,0,0,0.329294892959902,0.379473173765715,0,0,0,0,0.753150406214233,0,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.13654458722565,0,0,0,0,0,0.890469640183247,0,0,0.597743964753209,0,0,0,0,0,0.449341755736634,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0,0.508507300585533,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,0,0,0,0.217294743844016,1.27600463892768,0.824378340616761,2.66517388009317,0,0,0,0,0,0,0,0,0.210998064528027,0.163232808159148,0,0,0,0.0884575645033392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.313932918407225,0,0,0.138674673013139,0,0,0,0.52418000472609,0.171986032471617,0,0,0,0.387956065953678,0.0882561266915003,0.225980740780532,0.411125773940253,0,0,0,0,1.06726497369676,0.39961921916426,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0.717873024576814,0.199679000498991,0,0,0.268733889946905,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,2.1440859791201,0.662091970365432,0,0,1.72844298240254,0,0,0,0,0.226624183040251,1.46552233678082,0,0.129282956361551,0,0,0,0.533937062838473,0.471612915298998,0.414239055347196,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941063278792687,0,0,0,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0,0,0.265841714557995,0,0,0,0,0.181848659202559,0.429642228169954,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.7562092961788,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0.231051332300676,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0.496211178389294,0,0.255524855279191,0,0,0,0.227662191351298,0.620916591138472,0,0,0,0,0.472775363535873,0,0.235479278551542,0,0,0,0.215927591218621,0,0.142953088353313,0,0,0,0,0,0,0,0,0.118332000730565,0,0,0.22910686854405,0,0.955538938977433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218559560503957,0,0.245148321753905,0,0,0,0,0.339854229375634,0.0939839179798536,0,0,0,0,0,0,0.458729283404541,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227336094654718,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,2.34640942403454,0.244482888365733,0,0,0.201273793591026,0 | |||
|short_description=p20@TGM2 | |||
}} |
Latest revision as of 02:49, 16 September 2015
Short description: | p20@TGM2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_20_at_TGM2_5end |
Coexpression cluster: | NA |
Association with transcript: | 295bp_to_M98479_5end |
EntrezGene: | TGM2 |
HGNC: | 11778 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 2.24e-25 | 19 |
placental epithelial cell | 7.97e-17 | 3 |
hepatic stem cell | 2.24e-10 | 2 |
hepatic mesenchymal stem cell | 2.24e-10 | 2 |
glomerular endothelial cell | 1.65e-09 | 5 |
chorionic membrane mesenchymal stem cell | 7.79e-08 | 3 |
endothelial cell | 1.07e-07 | 36 |
glomerular cell | 6.47e-07 | 7 |
kidney corpuscule cell | 6.47e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
extraembryonic structure | 5.45e-24 | 24 |
extraembryonic membrane | 9.07e-23 | 14 |
membranous layer | 9.07e-23 | 14 |
chorion | 8.61e-19 | 7 |
placenta | 9.65e-13 | 4 |
allantois | 9.65e-13 | 4 |
epithelial tube | 4.90e-11 | 117 |
lateral plate mesoderm | 5.02e-09 | 203 |
egg chorion | 7.79e-08 | 3 |
splanchnic layer of lateral plate mesoderm | 9.88e-08 | 83 |
organ component layer | 2.08e-07 | 66 |
amnion | 3.52e-07 | 7 |
trunk blood vessel | 5.83e-07 | 7 |
primitive nephron | 6.47e-07 | 7 |
renal glomerulus | 6.47e-07 | 7 |
renal corpuscle | 6.47e-07 | 7 |
glomerular capsule | 6.47e-07 | 7 |
metanephric mesenchyme | 6.47e-07 | 7 |
glomerular tuft | 6.47e-07 | 7 |
S-shaped body | 6.47e-07 | 7 |
renal vesicle | 6.47e-07 | 7 |
comma-shaped body | 6.47e-07 | 7 |