FFCP PHASE1:Hg19::chr2:131594446..131594472,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50649 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=684 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-16bp_to_ENST00000526381_5end | |||
|cluster_id=chr2:131594446..131594472,+ | |||
|coexpression_cluster_id=C4126 | |||
|description=CAGE_peak_3_at_ARHGEF4_5end | |||
|id=chr2:131594446..131594472,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.30e-20!254;CL:0002076!9.61e-16!43;CL:0000223!3.00e-11!59;CL:0002368!3.40e-08!13;CL:0002251!1.11e-07!21;CL:0000082!1.80e-07!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;8.27e-12;42!CL:0002251;2.52e-10;20!CL:0002368;8.92e-09;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.42e-15,42;CL:0000066,3.41e-14,253;CL:0000223,6.62e-12,58;CL:0002251,3.77e-10,20;CL:0002368,1.21e-08,13 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.42e-10;82!CL:0000223;2.17e-07;58 | |||
|ontology_enrichment_disease=DOID:305!7.76e-21!106;DOID:0050687!5.78e-17!143;DOID:162!2.09e-10!235;DOID:14566!2.50e-10!239;DOID:1749!1.12e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.68e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,9.00e-11,106;DOID:1749,2.11e-08,14;DOID:0050687,3.29e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.02e-30!57;UBERON:0005068!4.02e-30!57;UBERON:0006241!4.02e-30!57;UBERON:0007135!4.02e-30!57;UBERON:0001017!7.36e-30!82;UBERON:0000924!1.20e-29!173;UBERON:0006601!1.20e-29!173;UBERON:0005743!1.23e-29!86;UBERON:0000073!3.02e-29!94;UBERON:0001016!3.02e-29!94;UBERON:0004121!8.03e-29!169;UBERON:0000033!3.61e-26!123;UBERON:0000955!1.13e-25!69;UBERON:0006238!1.13e-25!69;UBERON:0000153!1.30e-25!129;UBERON:0007811!1.30e-25!129;UBERON:0002616!2.78e-23!59;UBERON:0002346!2.19e-22!90;UBERON:0003075!1.03e-21!86;UBERON:0007284!1.03e-21!86;UBERON:0002780!1.27e-21!41;UBERON:0001890!1.27e-21!41;UBERON:0006240!1.27e-21!41;UBERON:0003080!1.06e-20!42;UBERON:0002020!1.54e-18!34;UBERON:0003528!1.54e-18!34;UBERON:0001893!2.38e-18!34;UBERON:0002791!7.88e-18!33;UBERON:0001869!7.71e-17!32;UBERON:0003056!1.32e-15!61;UBERON:0007023!2.33e-15!115;UBERON:0000062!1.20e-14!511;UBERON:0000922!4.15e-14!612;UBERON:0000064!7.64e-14!219;UBERON:0001004!6.38e-13!72;UBERON:0000956!3.30e-12!25;UBERON:0000203!3.30e-12!25;UBERON:0000475!3.60e-12!365;UBERON:0002050!6.21e-12!605;UBERON:0005423!6.21e-12!605;UBERON:0000923!1.13e-11!604;UBERON:0005291!1.13e-11!604;UBERON:0006598!1.13e-11!604;UBERON:0002532!1.13e-11!604;UBERON:0004119!5.03e-11!169;UBERON:0000925!5.03e-11!169;UBERON:0006595!5.03e-11!169;UBERON:0002619!5.27e-11!22;UBERON:0000468!5.56e-11!659;UBERON:0003076!1.23e-10!15;UBERON:0003057!1.23e-10!15;UBERON:0000065!2.90e-10!53;UBERON:0000481!6.82e-10!347;UBERON:0001007!7.34e-10!155;UBERON:0001555!7.34e-10!155;UBERON:0007026!7.34e-10!155;UBERON:0000467!7.70e-10!625;UBERON:0000072!1.01e-09!46;UBERON:0000480!1.04e-09!626;UBERON:0001950!1.53e-09!20;UBERON:0008947!1.78e-09!38;UBERON:0003258!1.78e-09!38;UBERON:0000464!3.77e-09!104;UBERON:0000477!5.78e-09!286;UBERON:0004111!6.28e-09!241;UBERON:0001041!7.43e-09!98;UBERON:0004732!2.15e-08!13;UBERON:0002308!4.17e-08!9;UBERON:0000125!4.17e-08!9;UBERON:0004733!4.28e-08!12;UBERON:0002028!4.28e-08!12;UBERON:0007277!4.28e-08!12;UBERON:0000063!7.85e-08!97;UBERON:0004921!8.53e-08!129;UBERON:0004185!8.53e-08!129;UBERON:0002420!9.57e-08!9;UBERON:0007245!9.57e-08!9;UBERON:0010009!9.57e-08!9;UBERON:0010011!9.57e-08!9;UBERON:0000454!9.57e-08!9;UBERON:0004802!1.80e-07!19;UBERON:0000115!1.80e-07!19;UBERON:0000077!1.81e-07!130;UBERON:0000483!7.10e-07!309;UBERON:0005178!7.73e-07!34;UBERON:0002224!7.73e-07!34;UBERON:0001048!7.84e-07!168;UBERON:0000466!9.90e-07!126 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;6.85e-19;34!UBERON:0003528;1.14e-18;34!UBERON:0002020;1.14e-18;34!UBERON:0000073;3.13e-18;53!UBERON:0002616;3.13e-18;53!UBERON:0002791;3.99e-18;32!UBERON:0001869;7.24e-18;32!UBERON:0002780;2.30e-17;41!UBERON:0001890;2.30e-17;41!UBERON:0000955;5.28e-14;68!UBERON:0001017;1.25e-13;75!UBERON:0000956;1.55e-13;25!UBERON:0000203;1.55e-13;25!UBERON:0002619;4.45e-13;22!UBERON:0001016;3.51e-11;83!UBERON:0001950;4.31e-11;20!UBERON:0000125;1.32e-10;9!UBERON:0002308;1.32e-10;9!UBERON:0004732;3.94e-10;13!UBERON:0002420;5.36e-10;9!UBERON:0007245;5.36e-10;9!UBERON:0010009;5.36e-10;9!UBERON:0010011;5.36e-10;9!UBERON:0000454;5.36e-10;9!UBERON:0004733;1.13e-09;12!UBERON:0002028;1.13e-09;12!UBERON:0009663;1.63e-08;7!UBERON:0002298;9.22e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.61e-36,56;UBERON:0005068,2.61e-36,56;UBERON:0006241,2.61e-36,56;UBERON:0007135,2.61e-36,56;UBERON:0000073,8.85e-33,53;UBERON:0002616,8.85e-33,53;UBERON:0001017,3.04e-32,81;UBERON:0000955,7.22e-31,68;UBERON:0006238,7.22e-31,68;UBERON:0001016,3.47e-30,89;UBERON:0010371,3.96e-29,104;UBERON:0004121,2.85e-28,171;UBERON:0000924,2.85e-28,171;UBERON:0006601,2.85e-28,171;UBERON:0002780,1.69e-24,41;UBERON:0001890,1.69e-24,41;UBERON:0003080,1.69e-24,41;UBERON:0006240,1.69e-24,41;UBERON:0003075,4.01e-24,82;UBERON:0007284,4.01e-24,82;UBERON:0011216,6.50e-24,223;UBERON:0002346,3.90e-23,86;UBERON:0003528,1.76e-22,34;UBERON:0002020,1.76e-22,34;UBERON:0001893,3.11e-22,34;UBERON:0002791,1.84e-20,32;UBERON:0001869,3.61e-20,32;UBERON:0003056,4.22e-17,61;UBERON:0007023,1.33e-15,114;UBERON:0010314,4.10e-15,132;UBERON:0000956,7.30e-14,25;UBERON:0000203,7.30e-14,25;UBERON:0002619,2.44e-13,22;UBERON:0003076,5.77e-13,15;UBERON:0003057,5.77e-13,15;UBERON:0001950,2.38e-11,20;UBERON:0000125,9.29e-11,9;UBERON:0002308,9.29e-11,9;UBERON:0002420,2.97e-10,9;UBERON:0007245,2.97e-10,9;UBERON:0010009,2.97e-10,9;UBERON:0010011,2.97e-10,9;UBERON:0000454,2.97e-10,9;UBERON:0001004,4.95e-10,74;UBERON:0004732,6.48e-10,13;UBERON:0004733,1.78e-09,12;UBERON:0002028,1.78e-09,12;UBERON:0007277,1.78e-09,12;UBERON:0009663,1.18e-08,7;UBERON:0000922,2.22e-08,592;UBERON:0000065,6.34e-08,54;UBERON:0002298,8.40e-08,6;UBERON:0004111,3.54e-07,240;UBERON:0000200,8.17e-07,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.218441372130172,0,0,0,0.672325146451775,0.602694528023977,0,0,1.23121058076788,0.612002073732759,1.25381888591235,0.85870796139317,3.55873505189499,1.75759695432724,0,0,0,0,0,0,2.75826367343678,5.72291245678675,8.13458822366933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.81619850790011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661743720148475,0,0.263504357079378,1.0478326039817,8.37879163072847,6.3033355273353,0,0,0,0,0.571994910780128,0,0,0,0,0,0,0,0,0,0,0,0,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,10.0301631992783,0,0,0,0,0,0,0,0,0,0.404132016209064,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0.168336113954066,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51239109112286,5.72766853240753,6.88331028933609,1.95157929807353,1.85541675650079,2.5562667431294,1.65857688024593,2.27088765788066,1.82488679537915,0,0,0,0,0,1.53798840051797,1.34867752062481,1.92808823906786,1.43382164552112,1.08939722046203,1.42362371466658,2.15730093056263,1.56977172100277,1.15424147083917,0,0,0.4115740113314,0,1.26755034821831,0,0,0,0.368965315629341,0,3.84125998930189,3.37205259772859,2.41269533787914,3.05541869023148,0,0,0,3.24605133930215,0,0,0,0.380508304469197,0.790204397959275,0.858486162094873,0,0,0,1.87467667973554,1.00789276919316,2.1266264586358,2.14940454486836,3.19697332365358,8.05103626246943,0,0,0,0.288239906833923,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,1.54657762555539,0.837581326671744,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,1.03473071292505,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.483437798366489,0.601519410909855,9.39226087146143,0,0.182091168006717,0,0.902399225814824,0.308061348417659,2.35304930753057,2.92278449306521,0.316654886678627,0,0,0,0,0,0,0,0,0.671624264166535,0,0,0.769350375349168,0,0.325378394664303,0.103041011647722,0,0,2.87132768998086,3.90036147621913,0,0.096670718292122,0,0,0.137836572484531,0,0,0.0852266274161009,0,2.31398881505369,3.2672311452068,4.21121951232128,5.2602046044886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,3.1753297199419,6.70302275535787,2.17781969722645,0,1.29151611801369,8.42357378338128,2.21715076768338,0.689170200620878,0,0,0,0,0,0,0,0,0,0,6.61608583148786,0,0,0,0.637705090915289,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0,0,0,0,0,0,0,0,0,0.242721043499027,0,0.852408440419239,0,0,1.22864280839693,1.9882952955326,7.17414023693615,1.8922479853894,0,0,0.19924798825107,0,0.755798243562828,18.9197062628986,0,0.311039587661807,0.898683511473268,2.86433879480975,0,0.0986434056369336,0,0,6.78532922266653,2.50473865036998,1.99613798001194,0.260427761085233,0,0,3.52759689685049,2.2882828526349,1.89110145414349,0,0,0.173624994933292,11.5146380155799,5.06505042226713,3.05163472634166,3.20679853800551,2.36438095162838,1.75508317723178,2.83240005149374,4.0432885840795,0.538651809526579,0.455768223388005,0.46112780877612,0.179515288819544,1.73835795075213,0,0,0,0,0,0,0,0,0,0,0,0.421996129056054,0.326465616318295,0.282706142867882,0,0,0,0,0,0.123563938946503,0,7.61632802681651,0,5.15381780595746,0.182454789215666,3.32629852184552,1.21390189767046,1.18375320854817,0,0.30607276163049,0.189559738885464,0.300646838828985,0.72581733978073,4.6525771089503,4.30289542638149,4.08112793929393,0,0.284609546029793,0,0.173559738335131,7.54541460090708,0.522355239482415,0.873633341210151,0,4.06376591414158,3.28901926887835,3.69519556739442,2.81268147816416,1.94163478721301,0.677942222341597,0,2.38457534043588,2.84898581801454,0.977756913674015,0.0801588202515337,0,3.39676336289621,2.01726584015748,0.687219576995494,0.171594997861965,11.524383839052,0.99402028452346,11.7847017308398,1.22313785466253,1.569042694685,0.203996435272644,0,7.80546375322726,6.57145818681567,0,0,4.99485973130698,0.279282401272254,0,0,0.399358000997982,0,0.223171457441873,0,0,0,0,0,0,0,0,6.36183751847443,10.896272488926,2.08979093004525,1.51293380256957,0.415440338029185,0.2249738915515,7.7380195455795,3.09822738955926,9.39217125277945,0,0.0524545881349981,0.844802692155252,3.04788476865836,3.64638874906946,0,0,0,0,0,0,0,0,0,0,0,0,7.88626033805458,5.15707146796491,0.171086837884329,0.704815022316672,0,0,0,0,0,0.730755590285376,6.38341257770182,0,0,0,0,0.157054096250234,3.54427271986794,3.78281421196086,4.75725536684699,9.74795632673121,8.09782076219022,7.5136647559074,0.276697269872462,4.74925550256005,0,1.99825733481477,2.35265819698172,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0.295710299979268,0.318593534327405,1.34940933649081,1.55262956876259,0,0,0,0,0,0,2.18218391043071,0.214821114084977,0.464033759878494,0.398095888698616,0,0,0,0,0.192619830407303,0,0,0,0,0.97894681802587,0,3.08801447160972,0,1.23682402162117,0.578742114812744,0.506827321959218,0.5124830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| |||
|short_description=p3@ARHGEF4 | |||
}} |
Latest revision as of 23:02, 16 September 2015
Short description: | p3@ARHGEF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGEF4_5end |
Coexpression cluster: | C4126_salivary_astrocytoma_spinal_hippocampus_medulla_thalamus_amygdala |
Association with transcript: | -16bp_to_ENST00000526381_5end |
EntrezGene: | ARHGEF4 |
HGNC: | 684 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.42e-15 | 42 |
epithelial cell | 3.41e-14 | 253 |
endodermal cell | 6.62e-12 | 58 |
epithelial cell of alimentary canal | 3.77e-10 | 20 |
respiratory epithelial cell | 1.21e-08 | 13 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 9.00e-11 | 106 |
squamous cell carcinoma | 2.11e-08 | 14 |
cell type cancer | 3.29e-07 | 143 |