FFCP PHASE1:Hg19::chr2:131594478..131594502,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=50649 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=684 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000526381_5end | |||
|cluster_id=chr2:131594478..131594502,+ | |||
|coexpression_cluster_id=C4126 | |||
|description=CAGE_peak_2_at_ARHGEF4_5end | |||
|id=chr2:131594478..131594502,+ | |||
|ontology_enrichment_celltype=CL:0000066!4.72e-16!254;CL:0002076!3.99e-13!43;CL:0000223!8.43e-10!59;CL:0002368!2.91e-07!13;CL:0000221!7.74e-07!71 | |||
|ontology_enrichment_celltype_v019=CL:0002076;4.49e-12;42!CL:0002251;6.73e-09;20!CL:0002368;2.26e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,6.21e-16,42;CL:0000223,8.83e-12,58;CL:0000066,6.35e-11,253;CL:0002251,7.44e-09,20;CL:0002368,2.16e-07,13 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.09e-12;82!CL:0000223;4.41e-07;58 | |||
|ontology_enrichment_disease=DOID:305!1.05e-14!106;DOID:0050687!9.37e-12!143;DOID:1749!9.76e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.93e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.77e-11,106;DOID:1749,4.79e-08,14;DOID:0050687,9.85e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0005743!1.42e-37!86;UBERON:0001017!5.43e-37!82;UBERON:0000073!6.15e-37!94;UBERON:0001016!6.15e-37!94;UBERON:0001049!9.13e-36!57;UBERON:0005068!9.13e-36!57;UBERON:0006241!9.13e-36!57;UBERON:0007135!9.13e-36!57;UBERON:0000924!1.84e-33!173;UBERON:0006601!1.84e-33!173;UBERON:0004121!4.01e-33!169;UBERON:0000955!1.00e-30!69;UBERON:0006238!1.00e-30!69;UBERON:0000033!2.65e-29!123;UBERON:0000153!3.11e-29!129;UBERON:0007811!3.11e-29!129;UBERON:0002616!3.62e-28!59;UBERON:0002780!1.67e-27!41;UBERON:0001890!1.67e-27!41;UBERON:0006240!1.67e-27!41;UBERON:0002346!1.09e-26!90;UBERON:0003075!1.22e-26!86;UBERON:0007284!1.22e-26!86;UBERON:0003080!2.22e-26!42;UBERON:0002020!7.09e-24!34;UBERON:0003528!7.09e-24!34;UBERON:0001893!1.03e-23!34;UBERON:0002791!4.40e-23!33;UBERON:0001869!4.46e-22!32;UBERON:0007023!4.83e-21!115;UBERON:0003056!1.22e-20!61;UBERON:0000956!5.01e-17!25;UBERON:0000203!5.01e-17!25;UBERON:0002619!1.09e-15!22;UBERON:0000064!5.21e-15!219;UBERON:0000922!3.90e-14!612;UBERON:0000062!4.24e-14!511;UBERON:0001950!4.64e-14!20;UBERON:0002050!8.46e-12!605;UBERON:0005423!8.46e-12!605;UBERON:0000475!9.64e-12!365;UBERON:0001004!1.64e-11!72;UBERON:0000923!1.72e-11!604;UBERON:0005291!1.72e-11!604;UBERON:0006598!1.72e-11!604;UBERON:0002532!1.72e-11!604;UBERON:0000468!4.12e-11!659;UBERON:0000481!1.68e-10!347;UBERON:0003076!2.26e-10!15;UBERON:0003057!2.26e-10!15;UBERON:0004111!3.84e-10!241;UBERON:0000477!5.33e-10!286;UBERON:0000467!1.06e-09!625;UBERON:0000480!1.44e-09!626;UBERON:0000065!3.38e-09!53;UBERON:0001041!5.20e-09!98;UBERON:0004119!6.95e-09!169;UBERON:0000925!6.95e-09!169;UBERON:0006595!6.95e-09!169;UBERON:0000072!9.13e-09!46;UBERON:0004732!2.34e-08!13;UBERON:0002308!2.35e-08!9;UBERON:0000125!2.35e-08!9;UBERON:0001007!3.06e-08!155;UBERON:0001555!3.06e-08!155;UBERON:0007026!3.06e-08!155;UBERON:0002420!3.20e-08!9;UBERON:0007245!3.20e-08!9;UBERON:0010009!3.20e-08!9;UBERON:0010011!3.20e-08!9;UBERON:0000454!3.20e-08!9;UBERON:0000063!5.58e-08!97;UBERON:0004733!7.05e-08!12;UBERON:0002028!7.05e-08!12;UBERON:0007277!7.05e-08!12;UBERON:0004921!9.27e-08!129;UBERON:0004185!9.27e-08!129;UBERON:0008947!1.08e-07!38;UBERON:0003258!1.08e-07!38;UBERON:0000464!2.54e-07!104;UBERON:0000025!2.60e-07!194;UBERON:0001048!4.45e-07!168;UBERON:0009663!8.75e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.50e-24;34!UBERON:0002020;1.50e-24;34!UBERON:0001893;2.77e-24;34!UBERON:0002791;3.34e-24;32!UBERON:0001869;4.90e-24;32!UBERON:0002780;5.13e-24;41!UBERON:0001890;5.13e-24;41!UBERON:0000073;7.87e-23;53!UBERON:0002616;7.87e-23;53!UBERON:0000956;1.04e-19;25!UBERON:0000203;1.04e-19;25!UBERON:0002619;6.87e-18;22!UBERON:0001950;9.00e-16;20!UBERON:0000955;1.17e-15;68!UBERON:0001017;2.97e-15;75!UBERON:0001016;3.23e-13;83!UBERON:0000125;1.24e-10;9!UBERON:0002308;1.24e-10;9!UBERON:0002420;1.97e-10;9!UBERON:0007245;1.97e-10;9!UBERON:0010009;1.97e-10;9!UBERON:0010011;1.97e-10;9!UBERON:0000454;1.97e-10;9!UBERON:0004732;1.05e-08;13!UBERON:0009663;1.52e-08;7!UBERON:0004733;4.74e-08;12!UBERON:0002028;4.74e-08;12!UBERON:0002298;5.90e-08;6!UBERON:0000200;3.12e-07;6!UBERON:0011216;7.09e-07;132 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.89e-44,56;UBERON:0005068,6.89e-44,56;UBERON:0006241,6.89e-44,56;UBERON:0007135,6.89e-44,56;UBERON:0001017,2.54e-42,81;UBERON:0000073,2.22e-40,53;UBERON:0002616,2.22e-40,53;UBERON:0001016,2.27e-40,89;UBERON:0000955,6.17e-36,68;UBERON:0006238,6.17e-36,68;UBERON:0004121,3.86e-35,171;UBERON:0000924,3.86e-35,171;UBERON:0006601,3.86e-35,171;UBERON:0002780,1.71e-33,41;UBERON:0001890,1.71e-33,41;UBERON:0003080,1.71e-33,41;UBERON:0006240,1.71e-33,41;UBERON:0010371,8.86e-33,104;UBERON:0011216,2.10e-31,223;UBERON:0003075,7.01e-30,82;UBERON:0007284,7.01e-30,82;UBERON:0002346,1.57e-29,86;UBERON:0003528,1.23e-28,34;UBERON:0002020,1.23e-28,34;UBERON:0001893,1.99e-28,34;UBERON:0002791,1.56e-26,32;UBERON:0001869,2.81e-26,32;UBERON:0003056,5.41e-24,61;UBERON:0007023,1.04e-19,114;UBERON:0000956,1.25e-19,25;UBERON:0000203,1.25e-19,25;UBERON:0002619,7.97e-18,22;UBERON:0010314,1.74e-17,132;UBERON:0001950,1.05e-15,20;UBERON:0003076,2.74e-11,15;UBERON:0003057,2.74e-11,15;UBERON:0000922,5.97e-11,592;UBERON:0000125,1.35e-10,9;UBERON:0002308,1.35e-10,9;UBERON:0002420,2.03e-10,9;UBERON:0007245,2.03e-10,9;UBERON:0010009,2.03e-10,9;UBERON:0010011,2.03e-10,9;UBERON:0000454,2.03e-10,9;UBERON:0001004,1.14e-09,74;UBERON:0004111,7.31e-09,240;UBERON:0004732,9.71e-09,13;UBERON:0009663,1.63e-08,7;UBERON:0002050,2.43e-08,564;UBERON:0004733,4.18e-08,12;UBERON:0002028,4.18e-08,12;UBERON:0007277,4.18e-08,12;UBERON:0002298,6.10e-08,6;UBERON:0000923,1.03e-07,560;UBERON:0010316,1.03e-07,560;UBERON:0005291,1.03e-07,560;UBERON:0006598,1.03e-07,560;UBERON:0010317,1.03e-07,560;UBERON:0002532,1.03e-07,560;UBERON:0005423,1.79e-07,581;UBERON:0000065,2.83e-07,54;UBERON:0000200,3.22e-07,6;UBERON:0000166,8.27e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0.655324116390517,0.263766978228454,0,0,0.672325146451775,0.602694528023977,0,0,0.246242116153576,0.204000691244253,1.88072832886853,4.86601178122796,7.8018422291544,1.12988375635323,0,0.0821005894499457,0,0,0,0,3.67768489791571,6.92773613189975,12.5716363456708,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.74150969775797,0,0.614843499851882,1.96468613246569,7.65020105414339,12.6066710546706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,13.5189156164186,0,0,0,0,0,0,0,0,0,0.67355336034844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.27652095183825,5.18217629122586,2.29443676311203,4.51302712679503,4.90360142789496,2.44007280025989,4.97573064073778,4.28945446488568,2.91981887260664,0,0,0,0,0,2.9576700009961,2.02301628093722,3.61516544825223,2.09558548191549,2.17879444092406,4.03360052488864,2.69662616320329,2.35465758150415,4.61696588335668,0,0,0,0,3.80265104465493,0,0.590789906681404,0,0.368965315629341,0,3.73150970389327,3.37205259772859,3.82010095164197,4.62942225792648,0,0,0,4.17349457910277,0,0.433099343283221,0,0.190254152234598,0.790204397959275,0.858486162094873,0,0,0,0.93733833986777,1.00789276919316,2.1266264586358,3.31366534000539,5.52204483176528,12.651628412452,0,0,0,0,0,0.063497894292169,0.381988425558278,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,2.60279707715243,3.09315525111078,1.34013012267479,3.82763250991898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0.519254429183621,0,1.0877350463246,1.00253235151642,22.6519232782305,0,0,0,0.451199612907412,0.539107359730903,0,0,0.316654886678627,0,0,0,0,0,0.501689773854853,0.254876273045038,0,1.11937377361089,0,0,0.512900250232778,0.656029291399411,0.325378394664303,0,0,0,3.44559322797703,1.30012049207304,0,0,0,0,0,0,0,0.0852266274161009,0,5.2891172915513,2.69066094311149,4.8492830747942,10.115778085555,0,0,0,0,0,0.869932992075073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.421258456238981,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,4.8111056362756,7.37332503089366,3.26672954583968,0.0941438007767792,0.43050537267123,0,1.33029046061003,1.83778720165568,0,0,0,0,0,0,0,0,0.106824071127473,0,7.59624669541198,0.185803175125719,0,0,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0.284136146806413,0,0,0.921482106297696,6.95903353436409,29.6812468626182,2.44879151050393,0,0,0.796991953004279,0.276283915531148,0.755798243562828,52.872908853614,0,0,0.898683511473268,4.29650819221462,0,0.0986434056369336,0,0,21.3253204140948,8.62743312905217,7.98455192004777,0.260427761085233,0,0,7.39657413855748,3.0510438035132,4.72775363535873,0.344743373241465,0,0,21.2577932595321,12.1802403011662,3.05163472634166,7.74054819518572,6.79759523593159,5.26524953169534,1.63407695278485,7.80772967960178,1.53900517007594,0,0.922255617552241,0.0897576444097721,0.977826347298073,0,0,0,0,0,0,0,0,0,0,0,0.632994193584081,0.326465616318295,0,0,0,0.0884575645033392,0,0.593042257361244,0,0,18.8723172345896,0,9.37057782901357,0.364909578431332,3.7176277597097,0.485560759068186,0.394584402849391,1.20990716048664,0.61214552326098,0.189559738885464,1.20258735531594,0.311064574191741,5.98188485436467,5.29587129400798,3.7671950208867,9.55779438183671,0,0,0.173559738335131,11.3671181000678,0.435296032902013,1.7472666824203,0,7.06321218410322,7.08966375736,7.06192930657599,4.65547279144413,0.970817393606503,2.71176888936639,0.137041924646751,1.78843150532691,6.58432277941138,2.73771935828724,0,0,2.79733453414982,1.00863292007874,0.343609788497747,0,13.6852058088742,0.745515213392595,22.8623213578292,0.67952103036807,1.255234155748,0.407992870545287,0,26.4184927032307,16.2917400881472,0,0,8.67528269121738,0.279282401272254,0.229160424011684,0,3.19486400798386,0,0.223171457441873,0.201550417460179,0,1.16495949527454,0,0,0,0,0,16.6998234859954,44.6747172045968,3.53656926623042,2.75078873194468,2.07720169014593,0.899895566206002,8.51182150013745,8.93018482872963,19.7906465683567,0,0.0524545881349981,0.211200673038813,1.6135860539956,8.25235348473615,0,0,0,0,0,0,0,0,0,0.453248366080503,0,0,19.5217264105941,15.0745165986667,0,0.704815022316672,0,0,0,0,0,2.67943716437971,14.6818489287142,0,0,0,0,0.471162288750703,8.86068179966986,10.4942587815688,19.6549761209205,29.8172781758837,26.5120433173077,23.0377654912533,0.691743174681154,6.12403999014322,0,1.14186133417987,2.58792401667989,0,0.28984205722165,0,0,0,0,0.251567901752575,0,0,0,0,0.295710299979268,0.477890301491107,1.34940933649081,0.465788870628778,0,0,0,0,0,0,2.54588122883583,0,1.85613503951397,0,0,0,0,0,0,0,0,0,0,0.97894681802587,0,4.63202170741458,0,0.353378291891762,0.192914038270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| |||
|short_description=p2@ARHGEF4 | |||
}} |
Latest revision as of 23:02, 16 September 2015
Short description: | p2@ARHGEF4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ARHGEF4_5end |
Coexpression cluster: | C4126_salivary_astrocytoma_spinal_hippocampus_medulla_thalamus_amygdala |
Association with transcript: | 0bp_to_ENST00000526381_5end |
EntrezGene: | ARHGEF4 |
HGNC: | 684 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
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Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 6.21e-16 | 42 |
endodermal cell | 8.83e-12 | 58 |
epithelial cell | 6.35e-11 | 253 |
epithelial cell of alimentary canal | 7.44e-09 | 20 |
respiratory epithelial cell | 2.16e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.77e-11 | 106 |
squamous cell carcinoma | 4.79e-08 | 14 |
cell type cancer | 9.85e-07 | 143 |