FFCP PHASE1:Hg19::chr3:38691158..38691203,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6331 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10593 | |||
|TSSclassifier=strong | |||
|UniProt=E9PEK2,E9PG18,E9PEF3,Q14524,Q86V90,E9PHB6 | |||
|association_with_transcript=0bp_to_ENST00000413689,ENST00000425664,ENST00000443581,ENST00000451551,ENST00000491944,NM_000335,NM_001099404,NM_001099405,NM_001160160,NM_001160161,NM_198056,uc003cil.3,uc003cin.2,uc003cio.2,uc010hhi.2,uc010hhk.2,uc011ayr.1_5end | |||
|cluster_id=chr3:38691158..38691203,- | |||
|coexpression_cluster_id=C20 | |||
|description=CAGE_peak_1_at_SCN5A_5end | |||
|id=chr3:38691158..38691203,- | |||
|ontology_enrichment_celltype=CL:0002139!1.49e-15!24;CL:0000115!1.63e-15!35;CL:0002078!5.85e-15!44;CL:0000222!6.77e-13!119;CL:0000071!7.67e-13!18;CL:0002546!7.67e-13!18;CL:0000213!1.05e-12!57;CL:0000215!1.05e-12!57;CL:0002321!5.83e-08!248;CL:0000220!1.77e-07!246;CL:1000449!2.68e-07!16;CL:1000413!2.94e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.45e-20;24!CL:0000115;5.32e-18;36!CL:0000071;2.30e-16;18!CL:0002078;2.95e-13;45!CL:0000213;6.10e-11;58!CL:0000215;6.10e-11;58!CL:1000449;2.24e-09;15!CL:1000413;4.78e-09;9!CL:1000497;1.14e-07;17!CL:0002518;1.14e-07;17!CL:0002321;2.23e-07;15!CL:0002681;2.24e-07;12!CL:0002584;2.24e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.14e-21,36;CL:0002078,2.58e-20,45;CL:0002139,7.21e-20,24;CL:0000213,1.78e-17,58;CL:0000215,1.78e-17,58;CL:0000071,2.56e-16,18;CL:0002546,2.56e-16,18;CL:0000222,7.54e-15,121;CL:1000449,1.84e-09,15;CL:1000413,5.09e-09,9;CL:0002321,3.67e-08,250;CL:1000497,9.71e-08,17;CL:0002518,9.71e-08,17;CL:0002681,1.93e-07,12;CL:0002584,1.93e-07,12 | |||
|ontology_enrichment_development_v019=CL:0002546;2.30e-16;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!9.04e-17!312;UBERON:0000483!3.37e-16!309;UBERON:0001986!7.67e-13!18;UBERON:0004638!7.67e-13!18;UBERON:0004852!7.67e-13!18;UBERON:0002049!1.47e-11!79;UBERON:0007798!1.47e-11!79;UBERON:0000487!3.78e-11!22;UBERON:0004111!1.17e-10!241;UBERON:0000468!2.30e-10!659;UBERON:0000025!2.53e-10!194;UBERON:0000477!4.26e-10!286;UBERON:0006914!1.15e-09!25;UBERON:0003914!2.76e-09!118;UBERON:0001009!5.41e-09!113;UBERON:0000481!6.26e-09!347;UBERON:0000055!1.38e-08!69;UBERON:0005743!1.59e-08!86;UBERON:0003056!2.24e-08!61;UBERON:0003075!2.42e-08!86;UBERON:0007284!2.42e-08!86;UBERON:0000467!2.85e-08!625;UBERON:0000480!4.28e-08!626;UBERON:0000475!7.14e-08!365;UBERON:0000080!7.47e-08!18;UBERON:0002120!7.47e-08!18;UBERON:0004875!7.47e-08!18;UBERON:0005721!7.47e-08!18;UBERON:0005754!7.47e-08!18;UBERON:0007297!7.47e-08!18;UBERON:0000073!7.62e-08!94;UBERON:0001016!7.62e-08!94;UBERON:0004535!8.01e-08!110;UBERON:0002346!8.36e-08!90;UBERON:0000033!1.07e-07!123;UBERON:0000922!1.28e-07!612;UBERON:0006555!1.53e-07!17;UBERON:0005103!1.53e-07!17;UBERON:0000083!1.53e-07!17;UBERON:0009201!1.53e-07!17;UBERON:0004819!1.53e-07!17;UBERON:0006553!1.53e-07!17;UBERON:0003074!1.53e-07!17;UBERON:0003060!1.53e-07!17;UBERON:0000153!1.87e-07!129;UBERON:0007811!1.87e-07!129;UBERON:0003103!2.17e-07!69;UBERON:0001017!2.56e-07!82;UBERON:0004211!2.68e-07!16;UBERON:0001285!2.68e-07!16;UBERON:0007684!2.68e-07!16;UBERON:0003220!2.68e-07!16;UBERON:0004208!2.68e-07!16;UBERON:0000490!2.85e-07!138;UBERON:0003915!2.94e-07!9;UBERON:0004700!2.94e-07!9;UBERON:0001917!2.94e-07!9;UBERON:0000058!3.19e-07!26;UBERON:0000064!3.52e-07!219;UBERON:0004876!5.50e-07!20;UBERON:0000970!6.91e-07!20;UBERON:0007625!6.96e-07!11;UBERON:0003886!7.71e-07!63;UBERON:0003887!8.74e-07!21;UBERON:0001981!9.25e-07!60;UBERON:0007500!9.25e-07!60;UBERON:0004537!9.25e-07!60;UBERON:0006965!9.25e-07!60 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.30e-16;18!UBERON:0001986;2.30e-16;18!UBERON:0004852;2.30e-16;18!UBERON:0000487;8.82e-15;22!UBERON:0000490;3.05e-12;33!UBERON:0006914;6.01e-12;25!UBERON:0006555;2.24e-09;15!UBERON:0004819;2.24e-09;15!UBERON:0001285;2.24e-09;15!UBERON:0007684;2.24e-09;15!UBERON:0003915;4.78e-09;9!UBERON:0004700;4.78e-09;9!UBERON:0001917;4.78e-09;9!UBERON:0007625;1.51e-08;11!UBERON:0000353;5.67e-08;15!UBERON:0001134;7.57e-08;16!UBERON:0002036;7.57e-08;16!UBERON:0000970;8.64e-08;20!UBERON:0000019;1.80e-07;19!UBERON:0000047;1.80e-07;19!UBERON:0004088;1.80e-07;19!UBERON:0010230;1.80e-07;19!UBERON:0001225;2.24e-07;12!UBERON:0008987;2.24e-07;12!UBERON:0002104;3.72e-07;21!UBERON:0000020;5.58e-07;23 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.56e-16,18;UBERON:0001986,2.56e-16,18;UBERON:0004852,2.56e-16,18;UBERON:0000487,7.07e-15,22;UBERON:0000119,2.84e-13,309;UBERON:0000483,5.77e-13,306;UBERON:0006914,4.98e-12,25;UBERON:0002049,3.94e-11,78;UBERON:0007798,3.94e-11,78;UBERON:0003914,5.84e-11,117;UBERON:0006555,9.12e-10,16;UBERON:0004819,9.12e-10,16;UBERON:0001009,9.72e-10,112;UBERON:0004211,1.84e-09,15;UBERON:0009773,1.84e-09,15;UBERON:0001231,1.84e-09,15;UBERON:0001285,1.84e-09,15;UBERON:0007684,1.84e-09,15;UBERON:0004208,1.84e-09,15;UBERON:0000025,2.24e-09,192;UBERON:0003915,5.09e-09,9;UBERON:0004700,5.09e-09,9;UBERON:0001917,5.09e-09,9;UBERON:0003103,6.33e-09,68;UBERON:0000055,7.38e-09,68;UBERON:0004111,9.53e-09,240;UBERON:0007625,1.56e-08,11;UBERON:0004535,2.55e-08,109;UBERON:0000353,4.87e-08,15;UBERON:0001225,1.93e-07,12;UBERON:0008987,1.93e-07,12;UBERON:0000970,2.78e-07,21;UBERON:0002104,2.78e-07,21;UBERON:0000058,4.66e-07,19;UBERON:0000019,5.08e-07,20;UBERON:0000047,5.08e-07,20;UBERON:0010312,5.08e-07,20;UBERON:0004088,5.08e-07,20;UBERON:0010230,5.08e-07,20;UBERON:0003072,5.08e-07,20;UBERON:0004128,5.08e-07,20;UBERON:0003071,5.08e-07,20;UBERON:0007500,8.06e-07,59;UBERON:0001981,8.06e-07,59;UBERON:0004537,8.06e-07,59;UBERON:0006965,8.06e-07,59 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0.845726424575827,6.00439790118782,0,2.61701557230111,0,1.26343974685366,0,1.96587149201207,4.88460817580699,0.218441372130172,0.527533956456907,0.247532705920093,0,0.672325146451775,0,0,0.487932798790507,6.03293184576261,6.5280221198161,3.44800193625897,3.72106783270374,2.87436292653057,4.14290710662849,0,0,0,0,0,0,0,0,0,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0.436194716338694,0,0,0,0,0.309706370895104,0,0,0,0,0,0,0.188242339542605,0,0,0,0.641858054152187,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0.546138611262131,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,1.24930726552346,0.236777252044017,2.46338399076314,0.201606743224732,0.534880391567015,0.289648807765598,0,1.34140171940727,1.15076305659177,0,0,0.144846518960824,0,0,9.16987726491458,8.20398770611487,6.14843499851882,1.89919659471683,0.364295288292542,0,0,0,0.132957960518865,0,0,0,28.6217866608055,13.763753521698,39.2268766816582,31.0919368058205,25.1699661725944,10.1793675517825,15.465627523724,8.52775305258785,5.33649394030065,8.70273593188143,9.26507429351038,12.1643536914962,15.3759096255347,13.6035339727971,11.3419872703446,10.1801690243851,13.9208211028225,23.1979649795644,18.397996495906,39.8691577018614,23.4498232230921,0,0,0,1.49091585508596,0.12663051166458,0.132409180813219,0.286836620748814,2.12801029319014,14.0169400035577,0,1.2333377420858,1.55605517699883,1.48181739276657,1.79808093424805,0.908144565869588,0.576175924479999,1.17160715916898,0.312160076830321,4.56377457235559,0.597794722207204,0.352303495931295,0.647491777472526,0.842704840213491,0,3.31652656741774,0.103325781175765,2.37600571456411,0.989067717114227,1.82032272387605,0.718618141816238,2.86171393721913,4.25402967564678,0,0.438977620880838,0,0.600952235626387,2.26864366320042,0.358779271377724,0.213557388818567,0,0.600182192168805,0,0,0,0.337552664482532,0.194874010322397,0,0,0.323292113637624,0,0,0.508681776931463,0,0.545492241181669,0,6.58658013099815,8.61443494089654,5.34492137199785,4.25010325563019,5.80337957013945,6.93456982244077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.85786545549578,29.4507724987236,0,2.94017422771084,0,0,0,0,0.245976877086227,6.34800898104545,0.109750285408626,0,0.502644862058154,0.185176890317059,3.9096996637239,5.19967392639789,7.21656710126366,17.8532823661618,2.81780866165972,6.0633908059651,5.55582615091933,5.13686211033415,0,1.71697232418975,0,0,0,0.93733833986777,0.839910640994298,0.283550194484773,0,0,0,0,0,0,0.144119953416961,0.25248486685276,0.380987365753014,0.763976851116555,0,0,0.205654985406647,0.300343057843917,0,2.80327710863402,2.1798003441664,0.8800594298514,0.129271715757778,0,0.845302752556,0.26593811658487,0,0.257207374262142,0,1.0656887160644,0.142977993658148,2.17048642156577,0,0,0,0,6.33022691825131,3.48613383440118,11.3969209947545,0,0,0,0.479249710983165,0,5.70547620162874,16.505068960104,6.78071864416265,30.2613027875424,0,0.394061520403854,0.646882724578552,0.256686072559497,5.84417635711666,3.90419561572865,2.31986643833309,1.84267891867784,1.27587750330633,0,0,0.414415513436035,0.24538298343828,1.00034104211935,0.271265023699736,0.831883446123229,0,0.157702415033935,0,0,0,2.0694614258501,0,0,0.434418072340414,4.89502893656851,14.4120238000559,0,0,0,0,0,0,0.992431231275107,0.153461973288062,0.561320188866147,0.512556597022804,3.58195074346692,0.804269605718038,0,0,0.355123450626254,0,0,0,0.362578348774867,0.40101294060657,0.0920809889358963,2.18147451512753,1.45672934405374,2.62248829918848,2.25599806453706,2.69553679865452,14.9026456143602,8.76835347919564,5.69978796021529,15.9226737699255,10.2056223165909,4.96606607034921,9.25363516141736,2.70946437543853,5.01689773854853,1.52925763827023,4.15538004464362,6.49236788694317,0,0,15.3870075069834,17.3847762220844,2.60302715731442,1.44257416306811,3.38807019827871,3.96045599618822,0,0,0,13.437229842605,1.69453478826109,4.45160656705776,14.1971669659066,0.322260734604821,1.88521702088497,8.94879587869059,28.4012193713092,0.165284915360978,0,0,0.10115778085555,0,0,0.6970372701606,0.308033580176089,1.06461206063404,0,0.37064843820784,0.143124886741991,1.48863347743867,9.8077621662805,0.571890581771475,1.02359116524534,0.42793898803392,0,0,1.61885211824983,0.54907405947211,1.29593642580255,0.404364963146632,1.58510321173008,1.68503382495592,1.95053495635836,0,0,0.545999645631943,0.141405431953713,1.13008116620243,0,0.66343897524122,0.438450885253763,0,1.31178950409327,0,0.92947049429925,3.09865162785466,1.43411352204052,0.88424136911809,0,0,0,0.658589785919804,1.89736586882858,1.74967360122491,0,0,0,0.753150406214233,0.43050537267123,0,0.886860307073351,0.229723400206959,0,0,0,0,0,0,0.540031437238115,0,0.213648142254946,0,1.47024129588619,0,1.298422916788,0.426851060090485,2.8696729091188,0,0,0,1.29848776109822,0,0,0,0,0,0,0,0.425846237690326,5.49608551609224,1.53620382154229,0.447352215784832,0.50054742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| |||
|short_description=p1@SCN5A | |||
}} |
Latest revision as of 03:26, 18 September 2015
Short description: | p1@SCN5A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SCN5A_5end |
Coexpression cluster: | C20_heart_left_skeletal_diaphragm_tongue_umbilical_throat |
Association with transcript: | 0bp_to_ENST00000413689, ENST00000425664, ENST00000443581, ENST00000451551, ENST00000491944, NM_000335, NM_001099404, NM_001099405, NM_001160160, NM_001160161, NM_198056, uc003cil.3, uc003cin.2, uc003cio.2, uc010hhi.2, uc010hhk.2, uc011ayr.1_5end |
EntrezGene: | SCN5A |
HGNC: | 10593 |
UniProt: | E9PEK2E9PG18E9PEF3Q14524Q86V90E9PHB6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.14e-21 | 36 |
meso-epithelial cell | 2.58e-20 | 45 |
endothelial cell of vascular tree | 7.21e-20 | 24 |
lining cell | 1.78e-17 | 58 |
barrier cell | 1.78e-17 | 58 |
blood vessel endothelial cell | 2.56e-16 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.56e-16 | 18 |
mesodermal cell | 7.54e-15 | 121 |
epithelial cell of nephron | 1.84e-09 | 15 |
endothelial cell of artery | 5.09e-09 | 9 |
embryonic cell | 3.67e-08 | 250 |
kidney cell | 9.71e-08 | 17 |
kidney epithelial cell | 9.71e-08 | 17 |
kidney cortical cell | 1.93e-07 | 12 |
renal cortical epithelial cell | 1.93e-07 | 12 |