FFCP PHASE1:Hg19::chrX:105936982..105936997,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:105936982..105936997,+
|short_description=p6@RNF128
|description=CAGE_peak_6_at_RNF128_5end
|association_with_transcript=-26bp_to_ENST00000418562_5end
|En...") |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79589 | |EntrezGene=79589 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21153 | |HGNC=21153 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JSK4 | |UniProt=Q5JSK4 | ||
|association_with_transcript=-26bp_to_ENST00000418562_5end | |||
|cluster_id=chrX:105936982..105936997,+ | |||
|coexpression_cluster_id=C234 | |||
|description=CAGE_peak_6_at_RNF128_5end | |||
|id=chrX:105936982..105936997,+ | |||
|ontology_enrichment_celltype=CL:0000223!2.12e-14!59;CL:0000083!6.87e-10!4;CL:0000181!9.70e-09!12;CL:0000417!9.70e-09!12;CL:0000668!9.70e-09!12;CL:0000414!9.70e-09!12;CL:0000412!9.70e-09!12;CL:0000182!9.70e-09!12 | |||
|ontology_enrichment_celltype_v019=CL:0000182;1.03e-15;12!CL:0002563;9.75e-13;4!CL:0002253;2.74e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,1.12e-15,12;CL:0000223,2.62e-15,58;CL:0002563,1.03e-12,4;CL:0002253,2.74e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;4.12e-17;11!UBERON:0009497;1.59e-14;13!UBERON:0008425;2.05e-13;1!UBERON:0006242;6.05e-13;1!CL:0000223;3.79e-11;58!UBERON:0003104;1.06e-08;31 | |||
|ontology_enrichment_disease=DOID:305!2.88e-13!106;DOID:0050687!1.17e-10!143;DOID:1793!6.87e-10!4;DOID:299!7.21e-09!25;DOID:4929!8.97e-09!2;DOID:3493!1.28e-08!2;DOID:7!4.21e-07!39;DOID:3119!5.35e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1799;1.82e-13;1!DOID:10165;1.82e-13;1!DOID:1798;1.82e-13;1 | |||
|ontology_enrichment_disease_v019_2=DOID:1799,1.82e-13,1;DOID:10165,1.82e-13,1;DOID:1798,1.82e-13,1;DOID:7,1.81e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0005409!2.08e-19!35;UBERON:0004119!1.46e-18!169;UBERON:0000925!1.46e-18!169;UBERON:0006595!1.46e-18!169;UBERON:0001007!5.22e-18!155;UBERON:0001555!5.22e-18!155;UBERON:0007026!5.22e-18!155;UBERON:0004921!1.70e-16!129;UBERON:0004185!1.70e-16!129;UBERON:0002108!2.40e-16!14;UBERON:0000160!8.51e-16!27;UBERON:0009497!1.14e-14!25;UBERON:0000015!1.14e-14!25;UBERON:0002423!1.14e-14!25;UBERON:0006235!1.14e-14!25;UBERON:0004161!1.14e-14!25;UBERON:0003929!9.92e-14!54;UBERON:0000077!3.19e-12!130;UBERON:0005911!6.74e-12!82;UBERON:0008835!8.89e-11!22;UBERON:0003894!8.89e-11!22;UBERON:0000949!9.94e-11!45;UBERON:0002114!1.03e-10!12;UBERON:0009854!2.98e-10!23;UBERON:0002075!2.99e-10!18;UBERON:0007499!2.51e-09!25;UBERON:0002294!2.63e-09!7;UBERON:0001173!2.63e-09!7;UBERON:0004912!2.63e-09!7;UBERON:0009856!6.44e-09!26;UBERON:0001041!4.31e-08!98;UBERON:0002107!1.70e-07!19;UBERON:0006925!1.70e-07!19;UBERON:0008836!1.70e-07!19;UBERON:0001264!9.10e-07!10;UBERON:0003922!9.10e-07!10;UBERON:0003923!9.10e-07!10;UBERON:0003924!9.10e-07!10;UBERON:0003921!9.10e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0001242;9.75e-13;4!UBERON:0001262;9.75e-13;4!UBERON:0004786;9.75e-13;4!UBERON:0004808;9.75e-13;4!UBERON:0001277;9.75e-13;4!UBERON:0005409;1.07e-12;22!UBERON:0002423;1.54e-11;25!UBERON:0000160;1.22e-10;17!UBERON:0002107;5.09e-10;19!UBERON:0006925;5.09e-10;19!UBERON:0002365;1.12e-09;31!UBERON:0002330;1.12e-09;31!UBERON:0004921;1.67e-08;33!UBERON:0000485;1.17e-07;7!UBERON:0003929;1.17e-07;7!UBERON:0001007;1.38e-07;81!UBERON:0003350;8.35e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003929,6.10e-13,54;UBERON:0001242,1.03e-12,4;UBERON:0001262,1.03e-12,4;UBERON:0004786,1.03e-12,4;UBERON:0004808,1.03e-12,4;UBERON:0001277,1.03e-12,4;UBERON:0009497,1.54e-11,25;UBERON:0000015,1.54e-11,25;UBERON:0002423,1.54e-11,25;UBERON:0006235,1.54e-11,25;UBERON:0004161,1.54e-11,25;UBERON:0005409,3.04e-11,25;UBERON:0000160,1.13e-10,17;UBERON:0002107,5.34e-10,19;UBERON:0006925,5.34e-10,19;UBERON:0008836,5.34e-10,19;UBERON:0001007,6.27e-10,145;UBERON:0001555,6.27e-10,145;UBERON:0007026,6.27e-10,145;UBERON:0002365,2.40e-09,31;UBERON:0002330,2.40e-09,31;UBERON:0004119,7.56e-09,160;UBERON:0000925,7.56e-09,160;UBERON:0006595,7.56e-09,160;UBERON:0008835,1.15e-08,22;UBERON:0003894,1.15e-08,22;UBERON:0004921,1.60e-08,118;UBERON:0009854,2.69e-08,23;UBERON:0005911,3.14e-08,82;UBERON:0007499,1.20e-07,25;UBERON:0009856,2.32e-07,26;UBERON:0003350,8.60e-07,8;UBERON:0002530,9.16e-07,59 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12972560932135,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,3.49839999984783,0,0.682760689712998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60297168788339,0.434589487688032,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54435528581093,0,0,1.23840590304675,0,0,0,0,0,0,0,0,0,0.242780379534093,0,1.20990716048664,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586654148204409,0,1.28071796843612,0,0.432271251462318,0,0.686379991447858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,1.02418136999391,0.906574442192831,1.14586024552114,1.87012214878023,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0,0,0.106787412567695,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3295669011497,0,0,0,0,0,0,0,0,0.781514011233092,5.23813388962845,0,0.147856086217045,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0.455324382702595,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0.121917924982269,0,0,0,0,0,0,0,0,0,0,1.46630900405095,0.874238242015829,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,2.19100916473955,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190941474834495,0,0,0,0,0,0,0,0,0,0.449126010532934,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,1.22988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45031339509947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12972560932135,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251932747854276,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0,0,0,3.49839999984783,0,0.682760689712998,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.60297168788339,0.434589487688032,0,0,0,0,0,0,0,0,0,0,0,0,0,2.54435528581093,0,0,1.23840590304675,0,0,0,0,0,0,0,0,0,0.242780379534093,0,1.20990716048664,0,0,0,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586654148204409,0,1.28071796843612,0,0.432271251462318,0,0.686379991447858,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,1.02418136999391,0.906574442192831,1.14586024552114,1.87012214878023,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.732761168390412,0,0,0,0,0,0.106787412567695,0.78602152549833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.3295669011497,0,0,0,0,0,0,0,0,0.781514011233092,5.23813388962845,0,0.147856086217045,0,0,0,0,0,0,0,0,0.638812138197976,0,0,0,0.455324382702595,0.0887023701626388,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0.121917924982269,0,0,0,0,0,0,0,0,0,0,1.46630900405095,0.874238242015829,0,0.245148321753905,0,0,0,0,0,0,0,0,0,0,0,2.19100916473955,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190941474834495,0,0,0,0,0,0,0,0,0,0.449126010532934,0,0,0,0,0,0 | ||
|short_description=p6@RNF128 | |||
}} | }} |
Latest revision as of 22:09, 18 September 2015
Short description: | p6@RNF128 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_RNF128_5end |
Coexpression cluster: | C234_oral_epidermoid_malignant_cervical_ductal_lung_keratoacanthoma |
Association with transcript: | -26bp_to_ENST00000418562_5end |
EntrezGene: | RNF128 |
HGNC: | 21153 |
UniProt: | Q5JSK4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 1.12e-15 | 12 |
endodermal cell | 2.62e-15 | 58 |
intestinal epithelial cell | 1.03e-12 | 4 |
epithelial cell of large intestine | 2.74e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
gut epithelium | 6.10e-13 | 54 |
intestinal mucosa | 1.03e-12 | 4 |
wall of intestine | 1.03e-12 | 4 |
gastrointestinal system mucosa | 1.03e-12 | 4 |
gastrointestinal system epithelium | 1.03e-12 | 4 |
intestinal epithelium | 1.03e-12 | 4 |
epithelium of foregut-midgut junction | 1.54e-11 | 25 |
anatomical boundary | 1.54e-11 | 25 |
hepatobiliary system | 1.54e-11 | 25 |
foregut-midgut junction | 1.54e-11 | 25 |
septum transversum | 1.54e-11 | 25 |
gastrointestinal system | 3.04e-11 | 25 |
intestine | 1.13e-10 | 17 |
liver | 5.34e-10 | 19 |
digestive gland | 5.34e-10 | 19 |
liver bud | 5.34e-10 | 19 |
digestive system | 6.27e-10 | 145 |
digestive tract | 6.27e-10 | 145 |
primitive gut | 6.27e-10 | 145 |
exocrine gland | 2.40e-09 | 31 |
exocrine system | 2.40e-09 | 31 |
endoderm-derived structure | 7.56e-09 | 160 |
endoderm | 7.56e-09 | 160 |
presumptive endoderm | 7.56e-09 | 160 |
hepatic diverticulum | 1.15e-08 | 22 |
liver primordium | 1.15e-08 | 22 |
subdivision of digestive tract | 1.60e-08 | 118 |
digestive tract diverticulum | 2.69e-08 | 23 |
endo-epithelium | 3.14e-08 | 82 |
epithelial sac | 1.20e-07 | 25 |
sac | 2.32e-07 | 26 |
epithelium of mucosa | 8.60e-07 | 8 |
gland | 9.16e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
islet cell tumor | 1.82e-13 | 1 |
endocrine pancreas cancer | 1.82e-13 | 1 |
pancreatic endocrine carcinoma | 1.82e-13 | 1 |
disease of anatomical entity | 1.81e-07 | 39 |