FFCP PHASE1:Mm9::chr10:79761915..79761918,+: Difference between revisions
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|id=chr10:79761915..79761918,+
|short_description=p5@Apc2
|description=CAGE_peak_5_at_Apc2_5end
|association_with_transcript=79bp_to_ENSMUST00000154212_5end
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=23805 | |EntrezGene=23805 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=D3YYQ9 | |UniProt=D3YYQ9 | ||
|association_with_transcript=79bp_to_ENSMUST00000154212_5end | |||
|cluster_id=chr10:79761915..79761918,+ | |||
|description=CAGE_peak_5_at_Apc2_5end | |||
|id=chr10:79761915..79761918,+ | |||
|ontology_enrichment_celltype=CL:0000117!8.80e-20!23;CL:0000337!8.80e-20!23;CL:0000540!1.71e-13!33;CL:0000047!1.71e-13!33;CL:0000031!1.71e-13!33;CL:0000404!1.71e-13!33;CL:0000393!1.49e-10!39;CL:0000211!1.49e-10!39;CL:0002319!3.97e-10!43;CL:0000221!9.07e-10!44;CL:0000133!9.07e-10!44;CL:0000055!6.23e-08!50;CL:0002609!4.54e-07!6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.85e-37,23;CL:0000337,1.85e-37,23;CL:0000540,6.77e-26,33;CL:0000047,6.77e-26,33;CL:0000031,6.77e-26,33;CL:0000404,6.77e-26,33;CL:0000120,7.86e-23,3;CL:0000393,8.57e-22,39;CL:0000211,8.57e-22,39;CL:0002319,1.08e-19,43;CL:0000221,3.17e-19,44;CL:0000133,3.17e-19,44;CL:0002321,9.40e-12,70;CL:0002609,2.19e-11,6;CL:0002612,8.12e-11,3;CL:0002613,1.14e-10,3;CL:0002608,1.77e-10,3;CL:0000723,8.24e-09,91;CL:0000048,8.24e-09,91;CL:0000034,3.36e-08,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!5.81e-17!71;UBERON:0003075!5.81e-17!71;UBERON:0007284!5.81e-17!71;UBERON:0001049!5.76e-16!52;UBERON:0005068!5.76e-16!52;UBERON:0006241!5.76e-16!52;UBERON:0007135!5.76e-16!52;UBERON:0001017!1.33e-15!73;UBERON:0005743!1.33e-15!73;UBERON:0000073!6.27e-15!75;UBERON:0001016!6.27e-15!75;UBERON:0004121!1.39e-13!102;UBERON:0000924!1.39e-13!102;UBERON:0006601!1.39e-13!102;UBERON:0002020!2.34e-13!34;UBERON:0000033!4.03e-13!63;UBERON:0003056!1.04e-12!49;UBERON:0000955!6.51e-11!50;UBERON:0006238!6.51e-11!50;UBERON:0002616!4.08e-10!49;UBERON:0002240!1.34e-09!6;UBERON:0005174!1.34e-09!6;UBERON:0001137!1.34e-09!6;UBERON:0002780!1.62e-09!39;UBERON:0001890!1.62e-09!39;UBERON:0006240!1.62e-09!39;UBERON:0003080!3.77e-09!40;UBERON:0001948!7.90e-09!5;UBERON:0002315!7.90e-09!5;UBERON:0003076!1.01e-08!12;UBERON:0003057!1.01e-08!12;UBERON:0002791!4.33e-08!29;UBERON:0003528!4.33e-08!29;UBERON:0001893!4.33e-08!29;UBERON:0007811!1.64e-07!86;UBERON:0000153!7.19e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,9.56e-17,34;UBERON:0000369,5.13e-14,5;UBERON:0002435,5.13e-14,5;UBERON:0000204,5.13e-14,5;UBERON:0010082,5.13e-14,5;UBERON:0001948,6.28e-14,5;UBERON:0002315,6.28e-14,5;UBERON:0001017,1.35e-13,73;UBERON:0001016,3.30e-13,75;UBERON:0002240,1.04e-11,6;UBERON:0005174,1.04e-11,6;UBERON:0001137,1.04e-11,6;UBERON:0002257,8.12e-11,3;UBERON:0001049,1.07e-10,52;UBERON:0005068,1.07e-10,52;UBERON:0006241,1.07e-10,52;UBERON:0007135,1.07e-10,52;UBERON:0000073,2.86e-10,54;UBERON:0004121,3.22e-10,95;UBERON:0000924,3.22e-10,95;UBERON:0006601,3.22e-10,95;UBERON:0002420,5.58e-09,8;UBERON:0007245,5.58e-09,8;UBERON:0010009,5.58e-09,8;UBERON:0010011,5.58e-09,8;UBERON:0000454,5.58e-09,8;UBERON:0003528,7.33e-09,29;UBERON:0002791,7.33e-09,29;UBERON:0001893,7.33e-09,29;UBERON:0002346,1.54e-08,64;UBERON:0003075,1.54e-08,64;UBERON:0007284,1.54e-08,64;UBERON:0010371,2.22e-07,73 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,1.01158230429799,1.5869729378161,2.53532561402472,0,0,0,0,0,0,0,0.829516898467821,0.405017814995072,1.26194976810829,1.42825492201902,0.662605622854841,1.22490799214954,1.24599112323707,0,0,0.127687338085188,0,1.58263545276233,1.18933936683133,0,0,0.56276261003168,0.30559649555362,0.589257170947335,1.42371680799103,1.4911955666024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0,0,2.76439574648302,0,0,0,0.162241263067758,0,0,0,0,0,0.229902104433473,0.180062129805349,0.30140963567143,0.544291993210623,0.512454881139399,0.187403449119458,0,0.215567992932842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92614151141356,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0,0,0,0,0,0.906284817968409,0,0.31136204275253,0.399024873401031,0,0.243106717068294,0,0,0.222246727801615,0.206035057238894,0,0,0,0.754505365544305,0.187283014939765,0.256100609619477,0.17230640686684,0,0.231768651889711,0.192909220463705,0,0.441596760403192,0.342869252385415,0.70990322463735,0,0.290692833264657,0.188218760830661,0.338458431566706,0.548783918618318,0,0.271608227691724,0,0.118635018124174,0,0,0,0.192906610981141,0.749431733813838,0.233931608445408,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,1.01158230429799,1.5869729378161,2.53532561402472,0,0,0,0,0,0,0,0.829516898467821,0.405017814995072,1.26194976810829,1.42825492201902,0.662605622854841,1.22490799214954,1.24599112323707,0,0,0.127687338085188,0,1.58263545276233,1.18933936683133,0,0,0.56276261003168,0.30559649555362,0.589257170947335,1.42371680799103,1.4911955666024,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0,0,2.76439574648302,0,0,0,0.162241263067758,0,0,0,0,0,0.229902104433473,0.180062129805349,0.30140963567143,0.544291993210623,0.512454881139399,0.187403449119458,0,0.215567992932842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.92614151141356,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0.129358683782755,0,0,0,0.164549020602121,0.304464949114599,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.460325236507177,0.572895513439397,0,0,0,0,0,0.906284817968409,0,0.31136204275253,0.399024873401031,0,0.243106717068294,0,0,0.222246727801615,0.206035057238894,0,0,0,0.754505365544305,0.187283014939765,0.256100609619477,0.17230640686684,0,0.231768651889711,0.192909220463705,0,0.441596760403192,0.342869252385415,0.70990322463735,0,0.290692833264657,0.188218760830661,0.338458431566706,0.548783918618318,0,0.271608227691724,0,0.118635018124174,0,0,0,0.192906610981141,0.749431733813838,0.233931608445408,0,0,0,0 | ||
|short_description=p5@Apc2 | |||
}} | }} |
Latest revision as of 09:44, 26 September 2015
Short description: | p5@Apc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Apc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 79bp_to_ENSMUST00000154212_5end |
EntrezGene: | Apc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.85e-37 | 23 |
neuroblast (sensu Vertebrata) | 1.85e-37 | 23 |
neuron | 6.77e-26 | 33 |
neuronal stem cell | 6.77e-26 | 33 |
neuroblast | 6.77e-26 | 33 |
electrically signaling cell | 6.77e-26 | 33 |
granule cell | 7.86e-23 | 3 |
electrically responsive cell | 8.57e-22 | 39 |
electrically active cell | 8.57e-22 | 39 |
neural cell | 1.08e-19 | 43 |
ectodermal cell | 3.17e-19 | 44 |
neurectodermal cell | 3.17e-19 | 44 |
embryonic cell | 9.40e-12 | 70 |
neuron of cerebral cortex | 2.19e-11 | 6 |
neuron of the ventral spinal cord | 8.12e-11 | 3 |
striatum neuron | 1.14e-10 | 3 |
hippocampal neuron | 1.77e-10 | 3 |
somatic stem cell | 8.24e-09 | 91 |
multi fate stem cell | 8.24e-09 | 91 |
stem cell | 3.36e-08 | 97 |
Ontology term | p-value | n |
---|---|---|
gray matter | 9.56e-17 | 34 |
corpus striatum | 5.13e-14 | 5 |
striatum | 5.13e-14 | 5 |
ventral part of telencephalon | 5.13e-14 | 5 |
future corpus striatum | 5.13e-14 | 5 |
regional part of spinal cord | 6.28e-14 | 5 |
gray matter of spinal cord | 6.28e-14 | 5 |
central nervous system | 1.35e-13 | 73 |
nervous system | 3.30e-13 | 75 |
spinal cord | 1.04e-11 | 6 |
dorsal region element | 1.04e-11 | 6 |
dorsum | 1.04e-11 | 6 |
ventral horn of spinal cord | 8.12e-11 | 3 |
neural tube | 1.07e-10 | 52 |
neural rod | 1.07e-10 | 52 |
future spinal cord | 1.07e-10 | 52 |
neural keel | 1.07e-10 | 52 |
regional part of nervous system | 2.86e-10 | 54 |
ectoderm-derived structure | 3.22e-10 | 95 |
ectoderm | 3.22e-10 | 95 |
presumptive ectoderm | 3.22e-10 | 95 |
basal ganglion | 5.58e-09 | 8 |
nuclear complex of neuraxis | 5.58e-09 | 8 |
aggregate regional part of brain | 5.58e-09 | 8 |
collection of basal ganglia | 5.58e-09 | 8 |
cerebral subcortex | 5.58e-09 | 8 |
brain grey matter | 7.33e-09 | 29 |
regional part of telencephalon | 7.33e-09 | 29 |
telencephalon | 7.33e-09 | 29 |
neurectoderm | 1.54e-08 | 64 |
neural plate | 1.54e-08 | 64 |
presumptive neural plate | 1.54e-08 | 64 |
ecto-epithelium | 2.22e-07 | 73 |