FFCP PHASE1:Hg19::chr9:3525867..3525902,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=5991 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9984 | |||
|TSSclassifier=strong | |||
|UniProt=E9PGD7,E9PGD6,F6UGA0,P48380,Q5JTM2 | |||
|association_with_transcript=80bp_to_ENST00000302303,ENST00000381985,ENST00000381986,ENST00000381992,ENST00000382004,NM_002919,NM_134428,uc003zhr.2,uc003zhs.1,uc010mhd.2,uc010mhe.1_5end | |||
|cluster_id=chr9:3525867..3525902,- | |||
|coexpression_cluster_id=C4820 | |||
|description=CAGE_peak_3_at_RFX3_5end | |||
|id=chr9:3525867..3525902,- | |||
|ontology_enrichment_celltype=CL:0000738!4.10e-18!140;CL:0000037!2.54e-17!172;CL:0000566!2.54e-17!172;CL:0000838!2.76e-17!52;CL:0000542!3.53e-17!53;CL:0000051!3.53e-17!53;CL:0002087!1.38e-16!119;CL:0002031!1.52e-16!124;CL:0002032!1.97e-15!165;CL:0000837!1.97e-15!165;CL:0000988!3.76e-15!182;CL:0000791!1.39e-09!18;CL:0000789!1.39e-09!18;CL:0002420!1.39e-09!18;CL:0002419!1.39e-09!18;CL:0000790!1.39e-09!18;CL:0002057!1.48e-09!42;CL:0000084!2.32e-09!25;CL:0000827!2.32e-09!25;CL:0000860!3.26e-09!45;CL:0000945!1.01e-07!24;CL:0000826!1.01e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.45e-10;53!CL:0000860;3.16e-10;33!CL:0002057;3.16e-10;33!CL:0000791;8.19e-10;18!CL:0000789;8.19e-10;18!CL:0002419;8.19e-10;18!CL:0000084;1.87e-09;25!CL:0002087;2.76e-08;104!CL:0000945;6.27e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,3.15e-19,136;CL:0000037,1.68e-18,168;CL:0002087,5.58e-18,115;CL:0002031,8.35e-18,120;CL:0000838,1.24e-17,52;CL:0000542,1.60e-17,53;CL:0000051,1.60e-17,53;CL:0000988,1.46e-16,177;CL:0002032,1.59e-16,161;CL:0000837,1.59e-16,161;CL:0000791,9.22e-10,18;CL:0000789,9.22e-10,18;CL:0002420,9.22e-10,18;CL:0002419,9.22e-10,18;CL:0000790,9.22e-10,18;CL:0000860,1.38e-09,42;CL:0002057,1.38e-09,42;CL:0000084,1.56e-09,25;CL:0000827,1.56e-09,25;CL:0000945,7.41e-08,24;CL:0000826,7.41e-08,24 | |||
|ontology_enrichment_development_v019=CL:0000051;1.45e-10;53!CL:0000790;8.19e-10;18!CL:0002057;2.95e-07;42!UBERON:0006601;3.33e-07;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!7.48e-25!57;UBERON:0005068!7.48e-25!57;UBERON:0006241!7.48e-25!57;UBERON:0007135!7.48e-25!57;UBERON:0001017!1.08e-23!82;UBERON:0005743!2.40e-22!86;UBERON:0007023!3.92e-22!115;UBERON:0002780!1.42e-21!41;UBERON:0001890!1.42e-21!41;UBERON:0006240!1.42e-21!41;UBERON:0003080!1.76e-21!42;UBERON:0000073!1.26e-20!94;UBERON:0001016!1.26e-20!94;UBERON:0000955!4.64e-20!69;UBERON:0006238!4.64e-20!69;UBERON:0002616!6.75e-20!59;UBERON:0002020!1.68e-18!34;UBERON:0003528!1.68e-18!34;UBERON:0001893!4.77e-18!34;UBERON:0002791!8.29e-18!33;UBERON:0001869!1.87e-17!32;UBERON:0000956!3.35e-14!25;UBERON:0000203!3.35e-14!25;UBERON:0002346!1.00e-13!90;UBERON:0003075!1.18e-13!86;UBERON:0007284!1.18e-13!86;UBERON:0002619!6.42e-13!22;UBERON:0003056!4.07e-12!61;UBERON:0001950!1.03e-11!20;UBERON:0000153!3.38e-09!129;UBERON:0007811!3.38e-09!129;UBERON:0000033!6.91e-08!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.37e-16;34!UBERON:0002020;1.37e-16;34!UBERON:0002791;1.46e-16;32!UBERON:0001869;2.16e-16;32!UBERON:0002780;3.74e-16;41!UBERON:0001890;3.74e-16;41!UBERON:0001893;4.40e-16;34!UBERON:0000956;1.33e-14;25!UBERON:0000203;1.33e-14;25!UBERON:0000073;1.90e-14;53!UBERON:0002616;1.90e-14;53!UBERON:0002619;2.81e-13;22!UBERON:0001950;4.94e-12;20!UBERON:0000955;4.09e-10;68!UBERON:0001017;1.40e-09;75!UBERON:0001016;3.79e-09;83!UBERON:0007023;3.01e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.44e-25,56;UBERON:0005068,2.44e-25,56;UBERON:0006241,2.44e-25,56;UBERON:0007135,2.44e-25,56;UBERON:0000073,6.76e-24,53;UBERON:0002616,6.76e-24,53;UBERON:0001017,1.50e-23,81;UBERON:0007023,3.96e-22,114;UBERON:0002780,5.13e-22,41;UBERON:0001890,5.13e-22,41;UBERON:0003080,5.13e-22,41;UBERON:0006240,5.13e-22,41;UBERON:0001016,1.25e-21,89;UBERON:0000955,7.50e-20,68;UBERON:0006238,7.50e-20,68;UBERON:0003528,7.12e-19,34;UBERON:0002020,7.12e-19,34;UBERON:0001893,2.06e-18,34;UBERON:0002791,5.72e-18,32;UBERON:0001869,8.32e-18,32;UBERON:0002346,1.45e-14,86;UBERON:0003075,1.56e-14,82;UBERON:0007284,1.56e-14,82;UBERON:0000956,1.76e-14,25;UBERON:0000203,1.76e-14,25;UBERON:0002619,3.60e-13,22;UBERON:0001950,6.14e-12,20;UBERON:0003056,1.04e-11,61;UBERON:0010371,1.15e-08,104 | |||
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| |||
|short_description=p3@RFX3 | |||
}} |
Latest revision as of 07:09, 17 September 2015
Short description: | p3@RFX3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_RFX3_5end |
Coexpression cluster: | C4820_cerebellum_parietal_occipital_pineal_duodenum_pituitary_temporal |
Association with transcript: | 80bp_to_ENST00000302303, ENST00000381985, ENST00000381986, ENST00000381992, ENST00000382004, NM_002919, NM_134428, uc003zhr.2, uc003zhs.1, uc010mhd.2, uc010mhe.1_5end |
EntrezGene: | RFX3 |
HGNC: | 9984 |
UniProt: | E9PGD7E9PGD6F6UGA0P48380Q5JTM2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 3.15e-19 | 136 |
hematopoietic stem cell | 1.68e-18 | 168 |
nongranular leukocyte | 5.58e-18 | 115 |
hematopoietic lineage restricted progenitor cell | 8.35e-18 | 120 |
lymphoid lineage restricted progenitor cell | 1.24e-17 | 52 |
lymphocyte | 1.60e-17 | 53 |
common lymphoid progenitor | 1.60e-17 | 53 |
hematopoietic cell | 1.46e-16 | 177 |
hematopoietic oligopotent progenitor cell | 1.59e-16 | 161 |
hematopoietic multipotent progenitor cell | 1.59e-16 | 161 |
mature alpha-beta T cell | 9.22e-10 | 18 |
alpha-beta T cell | 9.22e-10 | 18 |
immature T cell | 9.22e-10 | 18 |
mature T cell | 9.22e-10 | 18 |
immature alpha-beta T cell | 9.22e-10 | 18 |
classical monocyte | 1.38e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.38e-09 | 42 |
T cell | 1.56e-09 | 25 |
pro-T cell | 1.56e-09 | 25 |
lymphocyte of B lineage | 7.41e-08 | 24 |
pro-B cell | 7.41e-08 | 24 |
Ontology term | p-value | n |
---|---|---|
neural tube | 2.44e-25 | 56 |
neural rod | 2.44e-25 | 56 |
future spinal cord | 2.44e-25 | 56 |
neural keel | 2.44e-25 | 56 |
regional part of nervous system | 6.76e-24 | 53 |
regional part of brain | 6.76e-24 | 53 |
central nervous system | 1.50e-23 | 81 |
adult organism | 3.96e-22 | 114 |
regional part of forebrain | 5.13e-22 | 41 |
forebrain | 5.13e-22 | 41 |
anterior neural tube | 5.13e-22 | 41 |
future forebrain | 5.13e-22 | 41 |
nervous system | 1.25e-21 | 89 |
brain | 7.50e-20 | 68 |
future brain | 7.50e-20 | 68 |
brain grey matter | 7.12e-19 | 34 |
gray matter | 7.12e-19 | 34 |
telencephalon | 2.06e-18 | 34 |
regional part of telencephalon | 5.72e-18 | 32 |
cerebral hemisphere | 8.32e-18 | 32 |
neurectoderm | 1.45e-14 | 86 |
neural plate | 1.56e-14 | 82 |
presumptive neural plate | 1.56e-14 | 82 |
cerebral cortex | 1.76e-14 | 25 |
pallium | 1.76e-14 | 25 |
regional part of cerebral cortex | 3.60e-13 | 22 |
neocortex | 6.14e-12 | 20 |
pre-chordal neural plate | 1.04e-11 | 61 |
ecto-epithelium | 1.15e-08 | 104 |