FF:13129-140G6: Difference between revisions

Latest revision as of 18:51, 4 June 2020

Name:	J2E erythroblastic leukemia response to erythropoietin
Species:	Mouse (Mus musculus)
Library ID:	CNhs12668
Sample type:	time courses
Genomic View:	UCSC
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	blood
dev stage	NA
sex	NA
age	NA
cell type	erythroblast
cell line	J2E
company	NA
collaboration	Peter Klinken (Western Australian Institute of Medical Research)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	Repurified by minelute

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005969

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12668		CAGE		DRX008903		DRR009777

Accession ID Mm9

Library id		BAM		CTSS
CNhs12668		DRZ001202		DRZ002585

Accession ID Mm10

Library id		BAM		CTSS
CNhs12668		DRZ012552		DRZ013935

Download raw sequence, BAM & CTSS

Mm9

Fasta	BAM	CTSS
download	download	donwload

Mm10

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005969

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10062.CGATGT		sRNA-Seq		DRX037391		DRR041757

Accession ID Mm9

Library id		BAM		CTSS
SRhi10062.CGATGT		DRZ007366

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12668

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0749
1002	-0.116
1003	-0.0596
1004	0
1005	-0.771
1006	-0.143
1007	-0.0904
1008	0
1009	-0.2
101	0.161
1010	0
1011	0
1012	0
1013	-0.205
1014	-0.0874
1015	0.0483
1016	-0.471
1017	0
1018	0
1019	0
102	0
1020	1.353
1021	1.261
1022	-0.0831
1023	0
1024	-0.14
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	-0.176
103	-0.0887
1030	0
1031	-0.911
1032	-0.392
1033	0.725
1034	0
1035	0
1036	0.921
1037	0
1038	-0.425
1039	-0.282
104	0
1040	-0.893
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12668

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.103
MA0003.1	MA0003.1	0.798
MA0004.1	MA0004.1	0.0159
MA0006.1	MA0006.1	0.271
MA0007.1	MA0007.1	0.262
MA0009.1	MA0009.1	0.636
MA0014.1	MA0014.1	0.955
MA0017.1	MA0017.1	0.14
MA0018.2	MA0018.2	0.233
MA0019.1	MA0019.1	0.962
MA0024.1	MA0024.1	3.67261e-5
MA0025.1	MA0025.1	0.553
MA0027.1	MA0027.1	0.48
MA0028.1	MA0028.1	2.2894e-7
MA0029.1	MA0029.1	0.431
MA0030.1	MA0030.1	0.315
MA0031.1	MA0031.1	0.0548
MA0035.2	MA0035.2	7.04571e-14
MA0038.1	MA0038.1	0.0021
MA0039.2	MA0039.2	0.756
MA0040.1	MA0040.1	0.622
MA0041.1	MA0041.1	0.21
MA0042.1	MA0042.1	0.46
MA0043.1	MA0043.1	0.0652
MA0046.1	MA0046.1	3.22315e-4
MA0047.2	MA0047.2	0.759
MA0048.1	MA0048.1	0.0186
MA0050.1	MA0050.1	0.00164
MA0051.1	MA0051.1	0.0143
MA0052.1	MA0052.1	0.0301
MA0055.1	MA0055.1	2.18866e-4
MA0057.1	MA0057.1	0.579
MA0058.1	MA0058.1	0.00907
MA0059.1	MA0059.1	1.93555e-4
MA0060.1	MA0060.1	9.32862e-4
MA0061.1	MA0061.1	0.492
MA0062.2	MA0062.2	5.63626e-10
MA0065.2	MA0065.2	0.00555
MA0066.1	MA0066.1	0.312
MA0067.1	MA0067.1	0.87
MA0068.1	MA0068.1	0.00515
MA0069.1	MA0069.1	0.389
MA0070.1	MA0070.1	0.514
MA0071.1	MA0071.1	0.0451
MA0072.1	MA0072.1	0.845
MA0073.1	MA0073.1	0.841
MA0074.1	MA0074.1	0.126
MA0076.1	MA0076.1	1.61215e-9
MA0077.1	MA0077.1	0.431
MA0078.1	MA0078.1	0.187
MA0079.2	MA0079.2	0.0429
MA0080.2	MA0080.2	0.296
MA0081.1	MA0081.1	0.0746
MA0083.1	MA0083.1	0.0247
MA0084.1	MA0084.1	0.443
MA0087.1	MA0087.1	0.818
MA0088.1	MA0088.1	0.00937
MA0090.1	MA0090.1	0.334
MA0091.1	MA0091.1	0.286
MA0092.1	MA0092.1	0.651
MA0093.1	MA0093.1	0.0167
MA0099.2	MA0099.2	0.0521
MA0100.1	MA0100.1	0.0096
MA0101.1	MA0101.1	0.419
MA0102.2	MA0102.2	0.0893
MA0103.1	MA0103.1	0.469
MA0104.2	MA0104.2	1.45087e-4
MA0105.1	MA0105.1	0.00839
MA0106.1	MA0106.1	0.0828
MA0107.1	MA0107.1	0.716
MA0108.2	MA0108.2	0.00131
MA0111.1	MA0111.1	0.917
MA0112.2	MA0112.2	0.0845
MA0113.1	MA0113.1	0.472
MA0114.1	MA0114.1	0.116
MA0115.1	MA0115.1	0.015
MA0116.1	MA0116.1	0.00849
MA0117.1	MA0117.1	0.645
MA0119.1	MA0119.1	0.7
MA0122.1	MA0122.1	0.906
MA0124.1	MA0124.1	0.702
MA0125.1	MA0125.1	0.795
MA0131.1	MA0131.1	0.394
MA0135.1	MA0135.1	0.28
MA0136.1	MA0136.1	3.71292e-5
MA0137.2	MA0137.2	0.0267
MA0138.2	MA0138.2	0.123
MA0139.1	MA0139.1	0.369
MA0140.1	MA0140.1	1.5309e-20
MA0141.1	MA0141.1	0.00806
MA0142.1	MA0142.1	0.366
MA0143.1	MA0143.1	0.376
MA0144.1	MA0144.1	0.279
MA0145.1	MA0145.1	0.589
MA0146.1	MA0146.1	0.0911
MA0147.1	MA0147.1	1.94651e-5
MA0148.1	MA0148.1	0.761
MA0149.1	MA0149.1	0.00501
MA0150.1	MA0150.1	0.0197
MA0152.1	MA0152.1	0.188
MA0153.1	MA0153.1	0.0718
MA0154.1	MA0154.1	0.174
MA0155.1	MA0155.1	0.587
MA0156.1	MA0156.1	6.78612e-5
MA0157.1	MA0157.1	0.02
MA0159.1	MA0159.1	0.019
MA0160.1	MA0160.1	0.0128
MA0162.1	MA0162.1	0.952
MA0163.1	MA0163.1	2.4565e-4
MA0164.1	MA0164.1	0.403
MA0258.1	MA0258.1	0.16
MA0259.1	MA0259.1	0.0188

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12668

Novel motif	Logo	P-value
1	1	0.087
10	10	0.024
100	100	0.0475
101	101	0.481
102	102	0.36
103	103	0.086
104	104	0.639
105	105	0.898
106	106	0.809
107	107	0.314
108	108	0.642
109	109	0.0305
11	11	0.129
110	110	0.0248
111	111	0.00882
112	112	0.286
113	113	0.27
114	114	0.366
115	115	0.802
116	116	0.324
117	117	1.8708e-4
118	118	0.354
119	119	0.211
12	12	0.611
120	120	0.26
121	121	0.793
122	122	0.697
123	123	0.429
124	124	0.0403
125	125	0.00326
126	126	0.0975
127	127	0.0951
128	128	0.512
129	129	0.867
13	13	0.00763
130	130	0.54
131	131	0.208
132	132	0.339
133	133	0.414
134	134	0.0762
135	135	0.276
136	136	0.301
137	137	0.915
138	138	0.486
139	139	0.849
14	14	0.578
140	140	0.939
141	141	0.775
142	142	0.256
143	143	0.546
144	144	0.944
145	145	0.0435
146	146	0.757
147	147	0.829
148	148	0.247
149	149	0.106
15	15	0.122
150	150	0.272
151	151	0.996
152	152	0.418
153	153	0.656
154	154	0.987
155	155	0.636
156	156	0.488
157	157	0.508
158	158	0.00253
159	159	0.702
160	160	0.686
161	161	0.328
162	162	0.753
163	163	0.753
164	164	0.0343
165	165	0.936
166	166	0.0755
167	167	0.241
168	168	0.776
169	169	0.192
17	17	0.73
18	18	0.0575
19	19	0.762
2	2	0.156
20	20	0.00357
21	21	0.219
22	22	0.751
23	23	0.735
24	24	0.331
25	25	0.261
26	26	0.0135
27	27	0.787
28	28	0.921
29	29	0.00112
3	3	0.0931
30	30	0.339
31	31	0.891
32	32	0.719
33	33	0.0999
34	34	0.958
35	35	0.302
36	36	0.0106
37	37	0.245
38	38	0.451
39	39	0.763
4	4	0.433
40	40	0.112
41	41	0.0628
42	42	0.193
43	43	0.668
44	44	0.165
45	45	0.605
46	46	0.182
47	47	0.221
48	48	0.196
49	49	0.429
5	5	0.264
50	50	0.941
51	51	0.976
52	52	0.13
53	53	0.402
54	54	0.634
55	55	0.0342
56	56	0.98
57	57	0.141
58	58	0.791
59	59	0.735
6	6	0.858
60	60	0.845
61	61	0.589
62	62	0.309
63	63	0.581
64	64	0.392
65	65	0.611
66	66	0.164
67	67	0.18
68	68	0.624
69	69	0.728
7	7	0.15
70	70	0.0227
71	71	0.00366
72	72	0.659
73	73	0.258
74	74	0.549
75	75	0.0292
76	76	0.115
77	77	0.821
78	78	0.0642
79	79	0.743
8	8	0.0378
80	80	0.642
81	81	0.944
82	82	0.885
83	83	0.854
84	84	0.558
85	85	0.775
86	86	0.258
87	87	0.171
88	88	0.629
89	89	0.472
9	9	0.678
90	90	0.00967
91	91	0.794
92	92	0.939
93	93	0.19
94	94	0.234
95	95	0.0172
96	96	0.206
97	97	0.966
98	98	0.282
99	99	0.691

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12668

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000498 mouse J2E erythroblastic leukemia line 0min after treatment with erythropoietin sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000764 (erythroid lineage cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0000765 (erythroblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0100737 (leukemia cell line sample)
0000401 (erythroblastic leukemia cell line sample)
0000350 (experimentally modified sample)
0000344 (0 minute sample)
0000337 (erythropoietin treatment sample)
0000403 (mouse J2E erythroblastic leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0000498 (mouse J2E erythroblastic leukemia line 0min after treatment with erythropoietin sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008766
+|DRA_sample_Accession=CAGE@SAMD00005969
-|accession_numbers=CAGE;DRX008903;DRR009777;DRZ001202;DRZ002585
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005969
+|accession_numbers=CAGE;DRX008903;DRR009777;DRZ001202;DRZ002585;DRZ012552;DRZ013935
+|accession_numbers_RNASeq=sRNA-Seq;DRX037391;DRR041757;DRZ007366
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000764,CL:0000548,CL:0000763,CL:0002371,CL:0002242,CL:0000255,CL:0000765
@@ Line 9: / Line 11: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
+|donor= biol_rep2
 |expression_enrichment_score=chr2:28477452..28477483,-!p1@Gfi1b!2.38!294.62!Gfi1b;;chrX:133654667..133654672,-!p1@Esx1!2.18!150.69!Esx1;;chrX:7544943..7545001,-!p1@Gata1!2.15!140.85!Gata1;;chrX:133654344..133654358,-!p2@Esx1!2.03!106.41!Esx1;;chr8:87225670..87225697,+!p2@Lyl1!2.02!290.31!Lyl1;;chr8:87425854..87425891,+!p1@Klf1!1.93!83.65!Klf1;;chr19:5447886..5447905,+!p1@Fosl1!1.87!73.81!Fosl1;;chr6:88148650..88148669,+!p1@Gata2!1.85!553.56!Gata2;;chr15:103082088..103082136,-!p2@Nfe2!1.82!65.81!Nfe2;;chr8:87225702..87225726,+!p3@Lyl1!1.77!115.02!Lyl1;;chr19:5447692..5447711,+!p2@Fosl1!1.74!54.13!Fosl1;;chr15:103085660..103085681,-!p1@Nfe2!1.71!73.81!Nfe2;;chrX:133654245..133654253,-!p3@Esx1!1.64!43.05!Esx1;;chr15:103085690..103085710,-!p3@Nfe2!1.61!43.67!Nfe2;;chr18:35020854..35020869,+!p1@Egr1!1.57!1305.78!Egr1;;chr7:20162663..20162678,+!p1@Zfp296!1.36!28.91!Zfp296;;chr4:134708451..134708469,+!p1@Runx3!1.35!37.52!Runx3;;chr15:103170516..103170531,-!p2@Zfp385a!1.33!47.36!Zfp385a;;chr15:103170533..103170556,-!p1@Zfp385a!1.32!72.58!Zfp385a;;chr11:11584970..11585030,+!p2@Ikzf1!1.26!24.60!Ikzf1;;chr8:124806048..124806094,+!p1@Zfpm1!1.21!135.93!Zfpm1;;chr15:103085802..103085817,-!p4@Nfe2!1.17!17.22!Nfe2;;chr8:124806017..124806040,+!p2@Zfpm1!1.16!147.00!Zfpm1;;chr4:114730254..114730276,+!p2@Tal1!1.16!17.22!Tal1;;chr2:162880387..162880413,+!p1@Mybl2!1.14!79.96!Mybl2;;chr4:135728181..135728203,+!p2@E2f2!1.13!16.61!E2f2;;chr6:88148324..88148328,+!p3@Gata2!1.12!12.30!Gata2;;chr11:101646566..101646603,-!p1@Etv4!1.10!37.52!Etv4;;chr11:102178005..102178022,-!p8@Ubtf!1.07!17.84!Ubtf;;chr4:114732112..114732158,+!p1@Tal1!1.06!23.37!Tal1;;chr4:133801432..133801448,-!p3@Zfp593!1.06!15.99!Zfp593;;chr11:80196900..80196917,+!p3@Zfp207!1.02!31.98!Zfp207;;chr11:102177921..102177960,-!p9@Ubtf!1.01!13.53!Ubtf;;chr6:88143711..88143717,+!p2@Gata2!0.99!14.15!Gata2;;chr18:35020615..35020641,+!p2@Egr1!0.99!10.46!Egr1;;chr15:103085864..103085876,-!p5@Nfe2!0.95!8.00!Nfe2;;chrX:108009761..108009788,+!p1@Pou3f4!0.95!8.00!Pou3f4;;chr19:7342725..7342784,+!p1@Rcor2!0.93!31.98!Rcor2;;chrX:7544928..7544938,-!p2@Gata1!0.92!7.38!Gata1;;chr13:30077847..30077906,-!p1@E2f3!0.91!57.82!E2f3;;chr4:135728581..135728668,+!p1@E2f2!0.90!35.06!E2f2;;chr2:32219200..32219213,+!p5@Ciz1!0.90!9.23!Ciz1;;chr7:17642177..17642223,-!p3@Hif3a!0.89!6.77!Hif3a;;chr7:30094448..30094481,+!p4@Dpf1!0.88!8.00!Dpf1;;chr2:162880327..162880385,+!p2@Mybl2!0.87!45.51!Mybl2;;chr18:74375772..74375799,+!p2@Cxxc1!0.87!19.68!Cxxc1;;chr10:80040030..80040072,-!p1@Klf16!0.84!124.24!Klf16;;chr7:134169762..134169795,-!p3@Maz!0.83!55.36!Maz;;chr11:60036258..60036276,-!p3@Srebf1!0.83!10.46!Srebf1;;chr19:37509324..37509337,+!p1@Hhex!0.82!43.05!Hhex;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.82!14.15!Zbtb11;;chr4:114730288..114730306,+!p8@Tal1!0.82!5.54!Tal1;;chr6:88143570..88143590,+!p4@Gata2!0.82!5.54!Gata2;;chr15:103085821..103085828,-!p6@Nfe2!0.82!5.54!Nfe2;;chr4:133801453..133801492,-!p1@Zfp593!0.81!48.59!Zfp593;;chr4:133312695..133312709,-!p19@Arid1a!0.81!6.77!Arid1a;;chr11:102177974..102177992,-!p17@Ubtf!0.80!6.77!Ubtf;;chr7:30092993..30093076,+!p1@Dpf1!0.79!9.23!Dpf1;;chr11:101645830..101645881,-!p2@Etv4!0.78!9.84!Etv4;;chr6:145813905..145813932,-!p2@Bhlhe41!0.77!9.84!Bhlhe41;;chr3:32264530..32264544,-!p2@Zmat3!0.77!8.00!Zmat3;;chr12:77278238..77278252,-!p1@Esr2!0.77!4.92!Esr2;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.76!30.75!Zbtb11;;chr8:72520225..72520248,-!p9@Gatad2a!0.75!13.53!Gatad2a;;chr5:111082367..111082441,-!p1@Noc4l!0.74!116.86!Noc4l;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.73!11.69!Hmga1;;chr16:4559721..4559747,-!p3@Tfap4!0.73!10.46!Tfap4;;chr11:101646155..101646170,-!p3@Etv4!0.73!5.54!Etv4;;chr11:101646480..101646496,-!p4@Etv4!0.72!5.54!Etv4;;chr7:52962498..52962512,+!p12@Dbp!0.72!4.31!Dbp;;chr17:27693558..27693580,+!p1@Hmga1-rs1,p1@Hmga1!0.71!215.27!Hmga1;;chr2:156666727..156666753,+!p2@Tgif2!0.70!6.15!Tgif2;;chr17:23701084..23701128,-!p1@Zfp213!0.69!20.91!Zfp213;;chr1:74634786..74634804,-!p5@Zfp142!0.69!5.54!Zfp142;;chr8:124806111..124806122,+!p3@Zfpm1!0.69!4.92!Zfpm1;;chr14:47896467..47896523,-!p1@Wdhd1!0.68!52.90!Wdhd1;;chr8:87225329..87225396,+!p1@Lyl1!0.68!15.99!Lyl1;;chr10:41995430..41995458,-!p3@Foxo3!0.68!11.07!Foxo3;;chrX:34443339..34443348,-!p2@Nkrf!0.68!11.07!Nkrf;;chr2:181194069..181194144,-!p1@Zbtb46!0.67!23.99!Zbtb46;;chr7:135020060..135020124,-!p2@Zfp668!0.67!18.45!Zfp668;;chr2:162880418..162880429,+!p4@Mybl2!0.67!4.92!Mybl2;;chr15:103083245..103083260,-!p7@Nfe2!0.67!3.69!Nfe2;;chr15:103170561..103170572,-!p4@Zfp385a!0.66!5.54!Zfp385a;;chr12:85534778..85534812,-!p3@C130039O16Rik!0.65!11.69!C130039O16Rik;;chr16:4559608..4559681,-!p1@Tfap4!0.63!31.98!Tfap4;;chr7:26067619..26067702,+!p2@Cic!0.63!21.53!Cic;;chr4:114729646..114729665,+!p4@Tal1!0.63!4.92!Tal1;;chr8:72520015..72520053,-!p2@Gatad2a!0.62!25.22!Gatad2a;;chr5:140267476..140267493,+!p1@Mafk!0.62!20.91!Mafk;;chr6:145814003..145814056,-!p1@Bhlhe41!0.62!10.46!Bhlhe41;;chr11:115856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 |ffid_belonging_in_development=CL:0000049,CL:0000134
@@ Line 45: / Line 48: @@
 |is_obsolete=
 |library_id=CNhs12668
-|library_id_phase_based=1:CNhs12668
+|library_id_phase_based=2:CNhs12668
-|name=J2E erythroblastic leukemia response to erythropoietin, 00hr00min, biol_rep2
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;13129
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/mouse#srna;sample;SRhi10062.CGATGT.13129
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;13129
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/mouse#srna;sample;SRhi10062.CGATGT.13129
+|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm10.nobarcode.bam
+|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm10.nobarcode.ctss.bed.gz
+|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm9.nobarcode.bam
+|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm9.ctss.bed.gz
+|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.timecourse.hCAGE/J2E%2520erythroblastic%2520leukemia%2520response%2520to%2520erythropoietin%252c%252000hr00min%252c%2520biol_rep2.CNhs12668.13129-140G6.mm9.nobarcode.rdna.fa.gz
+|name=J2E erythroblastic leukemia response to erythropoietin
 |namespace=FANTOM5
 |part_of=
 |profile_cagescan=,,,
 |profile_hcage=CNhs12668,LSID953,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=-0.11779559634038,0,0,0,0,0,-0.853129147291671,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0.83127052260206,-0.350232843783153,0,0.671208837245349,0,0,-0.0659153433706589,-0.105227751225387,-0.180800839500318,-0.0199225264639189,-0.984211366477826,-0.269868638010351,1.05903684857947,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0,0,-0.130696565450787,0,0,-0.0742309351586685,-0.243225778194271,-0.310650657339386,-0.158091042771083,-0.0365927089968535,0,-0.0780086007519514,-0.194740515512231,-0.0224105764210457,0,0,-0.174847961794519,-0.222781109139009,0.897378268660033,-0.0788315948399074,0,0,0,0,0,0,0.42075060611118,0.772489622410725,0.645895286000094,0,0,0,0.674474643887282,0
 |rna_box=140
 |rna_catalog_number=
-|rna_concentration=2.40
+|rna_concentration=2.4
 |rna_extraction_protocol=Repurified by minelute
 |rna_lot_number=
@@ Line 66: / Line 80: @@
 |rna_tube_id=140G6
 |rna_weight_ug=23.98
+|rnaseq_library_id=SRhi10062.CGATGT
 |sample_age=
 |sample_category=time courses
@@ Line 86: / Line 101: @@
 |sample_strain=
 |sample_tissue=blood
-|timecourse=Erythropoiesis_J2E
+|time= 00hr00min
+|timecourse=J2E_erythrocytic_differentiation_(EPO)
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:13129-140G6;search_select_hide=table117:13129-140G6
 }}

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FF:13129-140G6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:51, 4 June 2020

CNhs12668

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0