FFCP PHASE1:Mm9::chr15:76984069..76984078,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr15:76984069..76984078,-
|short_description=p14@Rbfox2
|description=CAGE_peak_14_at_Rbfox2_5end
|association_with_transcript=163bp_to_ENSMUST00000111581,ENSMU...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=93686 | |EntrezGene=93686 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BP71 | |UniProt=Q8BP71 | ||
|association_with_transcript=163bp_to_ENSMUST00000111581,ENSMUST00000166610,NM_001110828,NM_001110829,NM_001110830,uc007wnc.2,uc007wnd.2,uc007wne.2,uc007wnf.2,uc011zvf.1,uc011zvg.1_5end | |||
|cluster_id=chr15:76984069..76984078,- | |||
|description=CAGE_peak_14_at_Rbfox2_5end | |||
|id=chr15:76984069..76984078,- | |||
|ontology_enrichment_celltype=CL:0000393!3.49e-14!39;CL:0000211!3.49e-14!39;CL:0000540!5.74e-12!33;CL:0000047!5.74e-12!33;CL:0000031!5.74e-12!33;CL:0000404!5.74e-12!33;CL:0000055!1.08e-11!50;CL:0002319!3.29e-10!43;CL:0000221!1.39e-09!44;CL:0000133!1.39e-09!44;CL:0000117!2.77e-09!23;CL:0000337!2.77e-09!23;CL:0002321!3.64e-08!70;CL:0000220!3.64e-08!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.15e-19,39;CL:0000211,1.15e-19,39;CL:0000117,7.28e-18,23;CL:0000337,7.28e-18,23;CL:0000540,5.05e-17,33;CL:0000047,5.05e-17,33;CL:0000031,5.05e-17,33;CL:0000404,5.05e-17,33;CL:0002609,5.07e-14,6;CL:0002319,4.38e-12,43;CL:0000221,1.02e-11,44;CL:0000133,1.02e-11,44;CL:0002321,5.80e-10,70;CL:0002608,1.10e-08,3;CL:0002613,2.26e-08,3;CL:0000723,2.89e-08,91;CL:0000048,2.89e-08,91;CL:0000120,5.06e-08,3;CL:0000034,2.01e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.30e-09!75;UBERON:0001016!2.30e-09!75;UBERON:0001017!3.58e-09!73;UBERON:0005743!3.58e-09!73;UBERON:0004121!1.56e-07!102;UBERON:0000924!1.56e-07!102;UBERON:0006601!1.56e-07!102 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000369,2.27e-08,5;UBERON:0002435,2.27e-08,5;UBERON:0000204,2.27e-08,5;UBERON:0010082,2.27e-08,5;UBERON:0003528,7.01e-08,29;UBERON:0002791,7.01e-08,29;UBERON:0001893,7.01e-08,29;UBERON:0002020,1.02e-07,34;UBERON:0001017,2.80e-07,73;UBERON:0001016,5.71e-07,75;UBERON:0010313,6.79e-07,3;UBERON:0002342,6.79e-07,3;UBERON:0002005,6.79e-07,3;UBERON:0005428,6.79e-07,3;UBERON:0005062,6.79e-07,3 | |||
|phase1_expression=0.160148847104794,0.348975407639361,0.909998478779072,0,0.500895729946347,0.839396359559449,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0.57423196411502,0.86152399231815,0.430942465371778,0,0.252030129759931,0.665191531965914,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.503587271902309,0.405507724878058,1.10128051297009,0,0.872100625521786,0,0.194429899074283,0.279972843250725,0,0,0,0,2.05807548828758,0.573066879877513,2.57836046138721,3.23706337375356,1.5869729378161,3.80298842103708,3.04960078862219,1.77858959222228,0,0,0,0.299600110518405,0.768436610643109,1.14058573539325,2.02508907497536,1.26194976810829,0,0.662605622854841,4.77714116938321,4.88811902193005,4.5960939330501,2.20231761998777,0.893811366596314,0.153606533256243,3.56092976871523,3.01909223887952,4.16730696445408,0.837548997004143,0,0.45839474333043,0.883885756421003,0.284743361598206,2.23679334990361,0.454357159999104,0.302286240427142,0.289864488701678,0,0,0,0,0,0,1.1930122580464,0.519572009205738,0.70667914902068,0,2.56652954828636,0,0,0.216491041011214,0.253359865475099,0,0,0.258937883647172,0,0.693941307064543,0,0.461230994512117,0.150722640552623,0.23517741427141,0.251333182659351,0,0.289198713839823,0,0,0.220841518460394,0,0,0,0.209446706813455,0,0,0,0,0.748953197024114,0.457500602818626,2.26177833803156,0,0.767146371990992,0.62336413367868,0.162241263067758,0.101839363850316,0,0,0,0.390361328888111,0.459804208866946,0.900310649026746,0.150704817835715,0.408218994907967,0.896796041993948,0.562210347358373,0.258703370739016,0,0,0.175951124163949,0.43839146485515,2.22437799380478,1.0447564995665,0,0.995171334092466,0,0,0,1.24275463521301,1.64168241986767,0.540186184383045,0.473489471170421,0.590292695242212,0.462801338662135,0.465067889500816,0.268273401399619,0.233530684734339,0,0.32833492815819,0,0,0,0.134206418760372,0,0.102904612379284,0,0,0.853153002140936,0.696710015581316,0.128867461322093,0.201683524623343,0.667134131534611,0,0,0.164698954724011,0.502670417600539,0.198956472041151,0,0,0.432276099749388,0,0.758671603812327,0.342745537829186,0,1.22190796707189,0.193952487167626,0.280543279561274,0.126473074248515,0,0,0,0.592905254174298,0.166845105716094,0,0.224862112384854,0.202860121388503,0,0.25462585178142,0.575392274901621,0,0.823684239564244,0,0,1.24815069245824,0.757736633841335,0.179397413521912,0,0,0.568474235311454,0.814824882210129,0.678980343100753,0.234690248288502,0.837531287209079,0,0.390267295715598,0.315270288212382,0,0.159454768657487,0,0.172684981865896,0,0,0,0,0.275936746304732,0.321101179975584,0.234423373184406,0.655739781506702,0.252470927204373,1.26203287766503,1.17131623288992,1.29254038639679,0.716906393857656,0.891194696329576,0.283076530788832,0.404810701674894,0.876767573733936,0.790575555893047,0.321321316421807,0.283880170416537,0.890328018336276,0.488660878060728,0.494910368917606,0,0.971122544619926,0,0,0.295301892880773,0,0,0.363533729477506,0,0,0,0,0.340439605753788,0.36012218806262,0.905510786479282,0.857348140126369,0.709360934569094,0.535106452806212,0.164549020602121,0.304464949114599,0.704015124191131,0,0,0,0.322928853391811,0.422190474497091,0.119372344003136,0,0,0,0,1.23832120777933,0.185194527369712,0,0.136694227721025,0,0,0,0,1.90934123603023,0.316335993581135,0.203319467126849,1.08005340821801,0.627264888043406,0.436725127492355,0.674321731924103,0.247960367176008,0.26175594198403,0,0,0,0.149516546043979,0.827292452285488,0,0,0.168956125490778,0.234714477291508,0.13020438484395,0,0,0,0,0.810900861160657,0.102710957164827,0,0.358053391334963,0.198681354781265,0,0,0.100966449948148,0,0,0.194915761479505,0,0,0.226730383615211,0,0,0.167884616364078,0,0.375364950902364,0.36630324853453,0,0,0.564751842617067,0.920650473014354,0.572895513439397,0.171853182343688,1.37016503954128,0,0,0.45032120322422,0,0,1.03787347584177,0.399024873401031,0.853668028770671,0.729320151204882,1.25767897576789,0.183843508450014,0,0.618105171716683,0.962757628775446,0.505394423527595,0.25347929989024,0.188626341386076,0.280924522409647,0.512201219238954,0.574354689556133,0,1.15884325944855,0.77163688185482,0,1.47198920134397,0,0.354951612318675,0.476872379894642,0.436039249896986,1.12931256498397,0.507687647350059,0.365855945745545,0,0.271608227691724,0,0.474540072496697,0.197008964751127,1.63692417267876,0.619747364743864,0.192906610981141,0.999242311751784,0.233931608445408,0,0,0.220591419119515,0.231867835620421 | |phase1_expression=0.160148847104794,0.348975407639361,0.909998478779072,0,0.500895729946347,0.839396359559449,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0.57423196411502,0.86152399231815,0.430942465371778,0,0.252030129759931,0.665191531965914,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.503587271902309,0.405507724878058,1.10128051297009,0,0.872100625521786,0,0.194429899074283,0.279972843250725,0,0,0,0,2.05807548828758,0.573066879877513,2.57836046138721,3.23706337375356,1.5869729378161,3.80298842103708,3.04960078862219,1.77858959222228,0,0,0,0.299600110518405,0.768436610643109,1.14058573539325,2.02508907497536,1.26194976810829,0,0.662605622854841,4.77714116938321,4.88811902193005,4.5960939330501,2.20231761998777,0.893811366596314,0.153606533256243,3.56092976871523,3.01909223887952,4.16730696445408,0.837548997004143,0,0.45839474333043,0.883885756421003,0.284743361598206,2.23679334990361,0.454357159999104,0.302286240427142,0.289864488701678,0,0,0,0,0,0,1.1930122580464,0.519572009205738,0.70667914902068,0,2.56652954828636,0,0,0.216491041011214,0.253359865475099,0,0,0.258937883647172,0,0.693941307064543,0,0.461230994512117,0.150722640552623,0.23517741427141,0.251333182659351,0,0.289198713839823,0,0,0.220841518460394,0,0,0,0.209446706813455,0,0,0,0,0.748953197024114,0.457500602818626,2.26177833803156,0,0.767146371990992,0.62336413367868,0.162241263067758,0.101839363850316,0,0,0,0.390361328888111,0.459804208866946,0.900310649026746,0.150704817835715,0.408218994907967,0.896796041993948,0.562210347358373,0.258703370739016,0,0,0.175951124163949,0.43839146485515,2.22437799380478,1.0447564995665,0,0.995171334092466,0,0,0,1.24275463521301,1.64168241986767,0.540186184383045,0.473489471170421,0.590292695242212,0.462801338662135,0.465067889500816,0.268273401399619,0.233530684734339,0,0.32833492815819,0,0,0,0.134206418760372,0,0.102904612379284,0,0,0.853153002140936,0.696710015581316,0.128867461322093,0.201683524623343,0.667134131534611,0,0,0.164698954724011,0.502670417600539,0.198956472041151,0,0,0.432276099749388,0,0.758671603812327,0.342745537829186,0,1.22190796707189,0.193952487167626,0.280543279561274,0.126473074248515,0,0,0,0.592905254174298,0.166845105716094,0,0.224862112384854,0.202860121388503,0,0.25462585178142,0.575392274901621,0,0.823684239564244,0,0,1.24815069245824,0.757736633841335,0.179397413521912,0,0,0.568474235311454,0.814824882210129,0.678980343100753,0.234690248288502,0.837531287209079,0,0.390267295715598,0.315270288212382,0,0.159454768657487,0,0.172684981865896,0,0,0,0,0.275936746304732,0.321101179975584,0.234423373184406,0.655739781506702,0.252470927204373,1.26203287766503,1.17131623288992,1.29254038639679,0.716906393857656,0.891194696329576,0.283076530788832,0.404810701674894,0.876767573733936,0.790575555893047,0.321321316421807,0.283880170416537,0.890328018336276,0.488660878060728,0.494910368917606,0,0.971122544619926,0,0,0.295301892880773,0,0,0.363533729477506,0,0,0,0,0.340439605753788,0.36012218806262,0.905510786479282,0.857348140126369,0.709360934569094,0.535106452806212,0.164549020602121,0.304464949114599,0.704015124191131,0,0,0,0.322928853391811,0.422190474497091,0.119372344003136,0,0,0,0,1.23832120777933,0.185194527369712,0,0.136694227721025,0,0,0,0,1.90934123603023,0.316335993581135,0.203319467126849,1.08005340821801,0.627264888043406,0.436725127492355,0.674321731924103,0.247960367176008,0.26175594198403,0,0,0,0.149516546043979,0.827292452285488,0,0,0.168956125490778,0.234714477291508,0.13020438484395,0,0,0,0,0.810900861160657,0.102710957164827,0,0.358053391334963,0.198681354781265,0,0,0.100966449948148,0,0,0.194915761479505,0,0,0.226730383615211,0,0,0.167884616364078,0,0.375364950902364,0.36630324853453,0,0,0.564751842617067,0.920650473014354,0.572895513439397,0.171853182343688,1.37016503954128,0,0,0.45032120322422,0,0,1.03787347584177,0.399024873401031,0.853668028770671,0.729320151204882,1.25767897576789,0.183843508450014,0,0.618105171716683,0.962757628775446,0.505394423527595,0.25347929989024,0.188626341386076,0.280924522409647,0.512201219238954,0.574354689556133,0,1.15884325944855,0.77163688185482,0,1.47198920134397,0,0.354951612318675,0.476872379894642,0.436039249896986,1.12931256498397,0.507687647350059,0.365855945745545,0,0.271608227691724,0,0.474540072496697,0.197008964751127,1.63692417267876,0.619747364743864,0.192906610981141,0.999242311751784,0.233931608445408,0,0,0.220591419119515,0.231867835620421 | ||
|short_description=p14@Rbfox2 | |||
}} | }} |
Latest revision as of 01:19, 27 September 2015
Short description: | p14@Rbfox2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_14_at_Rbfox2_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 163bp_to_ENSMUST00000111581, ENSMUST00000166610, NM_001110828, NM_001110829, NM_001110830, uc007wnc.2, uc007wnd.2, uc007wne.2, uc007wnf.2, uc011zvf.1, uc011zvg.1_5end |
EntrezGene: | Rbfox2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.15e-19 | 39 |
electrically active cell | 1.15e-19 | 39 |
CNS neuron (sensu Vertebrata) | 7.28e-18 | 23 |
neuroblast (sensu Vertebrata) | 7.28e-18 | 23 |
neuron | 5.05e-17 | 33 |
neuronal stem cell | 5.05e-17 | 33 |
neuroblast | 5.05e-17 | 33 |
electrically signaling cell | 5.05e-17 | 33 |
neuron of cerebral cortex | 5.07e-14 | 6 |
neural cell | 4.38e-12 | 43 |
ectodermal cell | 1.02e-11 | 44 |
neurectodermal cell | 1.02e-11 | 44 |
embryonic cell | 5.80e-10 | 70 |
hippocampal neuron | 1.10e-08 | 3 |
striatum neuron | 2.26e-08 | 3 |
somatic stem cell | 2.89e-08 | 91 |
multi fate stem cell | 2.89e-08 | 91 |
granule cell | 5.06e-08 | 3 |
stem cell | 2.01e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
corpus striatum | 2.27e-08 | 5 |
striatum | 2.27e-08 | 5 |
ventral part of telencephalon | 2.27e-08 | 5 |
future corpus striatum | 2.27e-08 | 5 |
brain grey matter | 7.01e-08 | 29 |
regional part of telencephalon | 7.01e-08 | 29 |
telencephalon | 7.01e-08 | 29 |
gray matter | 1.02e-07 | 34 |
central nervous system | 2.80e-07 | 73 |
nervous system | 5.71e-07 | 75 |
neural crest-derived structure | 6.79e-07 | 3 |
neural crest | 6.79e-07 | 3 |
enteric nervous system | 6.79e-07 | 3 |
vagal neural crest | 6.79e-07 | 3 |
neural fold | 6.79e-07 | 3 |