FFCP PHASE1:Hg19::chr16:19421803..19421848,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr16:19421803..19421848,+ to FFCP PHASE1:Hg19::chr16:19421803..19421848,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79838 | |EntrezGene=79838 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22999 | |HGNC=22999 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYU8 | |UniProt=F5GYU8 | ||
|association_with_transcript=-12bp_to_ENST00000541464,uc010vaq.1_5end | |||
|cluster_id=chr16:19421803..19421848,+ | |||
|coexpression_cluster_id=C3539 | |||
|description=CAGE_peak_4_at_TMC5_5end | |||
|id=chr16:19421803..19421848,+ | |||
|ontology_enrichment_celltype=CL:0000066!5.85e-10!254 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.93e-09,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;5.77e-33;29!UBERON:0006595;1.16e-15;86!UBERON:0001041;1.06e-09;30!UBERON:0009847;1.70e-09;3!UBERON:0003353;1.70e-09;3 | |||
|ontology_enrichment_disease=DOID:305!5.49e-29!106;DOID:0050687!3.59e-24!143;DOID:162!1.13e-11!235;DOID:14566!5.37e-11!239;DOID:299!2.42e-09!25;DOID:1749!8.29e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:299;8.23e-10;25!DOID:305;1.10e-09;106!DOID:0050615;4.65e-08;16!DOID:3493;8.20e-07;2!DOID:1749;9.24e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.80e-33,106;DOID:0050687,2.87e-23,143;DOID:162,1.83e-12,235;DOID:14566,5.54e-12,239;DOID:299,9.12e-10,25;DOID:0050615,4.38e-08,16;DOID:3493,6.32e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.84e-21!169;UBERON:0000925!6.84e-21!169;UBERON:0006595!6.84e-21!169;UBERON:0004921!7.81e-21!129;UBERON:0004185!7.81e-21!129;UBERON:0001007!1.31e-20!155;UBERON:0001555!1.31e-20!155;UBERON:0007026!1.31e-20!155;UBERON:0000077!5.83e-18!130;UBERON:0000065!4.88e-17!53;UBERON:0008947!1.98e-16!38;UBERON:0003258!1.98e-16!38;UBERON:0007023!5.27e-16!115;UBERON:0001004!1.19e-15!72;UBERON:0001041!1.04e-13!98;UBERON:0001737!7.25e-13!9;UBERON:0000072!1.41e-11!46;UBERON:0000481!1.65e-09!347;UBERON:0001557!1.67e-08!19;UBERON:0000063!4.44e-08!97;UBERON:0005153!6.75e-08!37;UBERON:0002048!1.69e-07!22;UBERON:0000117!1.69e-07!22;UBERON:0000171!1.69e-07!22;UBERON:0000170!1.69e-07!22;UBERON:0005597!1.69e-07!22;UBERON:0000118!1.69e-07!22;UBERON:0005178!4.84e-07!34;UBERON:0002224!4.84e-07!34;UBERON:0002294!5.57e-07!7;UBERON:0001173!5.57e-07!7;UBERON:0004912!5.57e-07!7;UBERON:0000064!7.09e-07!219;UBERON:0005911!9.92e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;6.66e-26;9!UBERON:0001557;6.66e-26;9!UBERON:0000065;6.45e-16;44!UBERON:0000072;1.42e-14;37!UBERON:0001004;6.09e-11;65!UBERON:0002294;4.04e-10;7!UBERON:0001173;4.04e-10;7!UBERON:0002048;1.78e-09;22!UBERON:0000117;1.78e-09;22!UBERON:0000171;1.78e-09;22!UBERON:0000170;1.78e-09;22!UBERON:0004921;1.66e-07;33!UBERON:0002394;5.23e-07;4!UBERON:0003928;5.23e-07;4!UBERON:0005409;8.67e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,4.16e-26,9;UBERON:0004921,4.96e-24,118;UBERON:0008947,5.34e-24,38;UBERON:0003258,5.34e-24,38;UBERON:0001007,2.36e-20,145;UBERON:0001555,2.36e-20,145;UBERON:0007026,2.36e-20,145;UBERON:0001041,2.72e-19,87;UBERON:0000065,4.04e-19,54;UBERON:0004119,9.68e-19,160;UBERON:0000925,9.68e-19,160;UBERON:0006595,9.68e-19,160;UBERON:0001004,7.68e-17,74;UBERON:0000072,4.84e-14,47;UBERON:0001557,6.32e-14,19;UBERON:0005153,1.53e-10,37;UBERON:0002048,1.71e-09,22;UBERON:0000117,1.71e-09,22;UBERON:0000171,1.71e-09,22;UBERON:0000170,1.71e-09,22;UBERON:0005597,1.71e-09,22;UBERON:0000118,1.71e-09,22;UBERON:0011216,3.72e-08,223;UBERON:0002294,7.97e-08,9;UBERON:0001173,7.97e-08,9;UBERON:0004912,7.97e-08,9;UBERON:0005157,1.14e-07,47;UBERON:0001048,3.77e-07,160;UBERON:0005178,6.43e-07,34;UBERON:0002224,6.43e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164437904603676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.42311289670768,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.464775771478074,0.10366105501537,0.252320850875628,0.36497735907583,0,0,0,0,0,3.31259040111563,5.22612539242115,3.13314338848527,1.7647035637183,3.26819166138609,4.03360052488864,3.10112008768378,3.33576490713088,3.07797725557112,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0,2.57602529119306,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.510450849978337,3.0347334256665,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,1.7887322147588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.9069459346987,0.146508179271894,0,0,0,0.23874448473769,0,0,0,0.140669416410513,0,0,0,0.996239941255349,0.828851746593443,0,0,0,0,3.14539229015644,1.43216939740487,0,0.197286811273867,0,0,0,0,0,0.260427761085233,1.31189999994294,0.724999575434793,1.0241410345695,1.5255219017566,0,0,0,0.173624994933292,0,0.120596438625408,0,0,0,0,0,0,0.0769502585037971,0,0.922255617552241,0.718061155278177,0.325942115766024,0,0,0,0,0,0.166211681900156,0,0,0,0,0.635746315921515,4.00896322603251,0.163232808159148,0.282706142867882,0,0.995261931078505,3.44984501563023,0,0,0,0,0.202203398942031,0,0,0,0.586993856796269,0,0,0,0,0,0,0.518440956986236,0,0,0,0,0,0,1.04135843001079,0.195984794828755,2.00236175134926,1.57254001417827,0,1.64485763191445,2.77739404927505,1.39596276990456,0.969890164884194,0,1.12990370390266,0,0,0.126621591911757,0.782205530939212,2.08412932653988,2.98834192635094,0.19980960958213,8.21315377778404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,1.79711100449092,0,0,0,0,0,0,0,0,0,0,0,0.544813624446302,0.482259445395058,0.137539436597234,0.415440338029185,0,0,0.789744236554321,0,0,0,0.739202355635845,0,2.30298236783334,0.714695326373367,0,0,0,0,0,0,3.11951578847488,0,0,0.439656701034247,0,0,0,6.84347351537318,8.45778026780006,10.7855286693372,18.5501080017606,4.55662960881915,0,0,0.121792598380896,0,0,2.506898940227,1.53172788381731,0.655745261419609,3.29813602125492,0,0,0.250381861413,0.573409195690071,0.110929051536852,0.310482014706917,0,0.249960815924213,0,0,0.941063278792687,1.40500471742064,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34833881285112,0,0,0,0,0,0,0.308801447160972,0,0.530067437837643,0,0,0,0,0,0.138258436151731,0,0,0,0,0,1.47918486351039,0,0,0,0,0,0,0,0,0,0,0,0.169732529954025,0,0.123935764259002,0.558644917973244,0,0,0,0,0,0.256916900385838,0,0.798169295285756,0,0,0.138314504928436,0.322951291263702,0,0.294443155503077,0.589848616738702,0,0.924205329202706,0,0,0,0.977734268540344,0,2.34454203369928,0,0,2.80926563812386,0.540300676947157,0,0.413373593002368,0.19024743058172,0,0.548257766857182,1.98484471355718,0.527613733078862,2.42748612515231,0.535701835878287,0,0,0,0,0,0,0.271878931907327,0.197318320688547,2.6002644994473,3.00324785108587,2.90424443546902,0,1.12108865325516,0.913158720509496,0.215927591218621,0,1.85839014859306,0,0,0,0,0,0,0,1.72090943528111,0,0,0,0.22910686854405,0,0.955538938977433,0,1.66855397145913,5.85206039914893,0,0,0,0.485710993059139,0.467878926924211,0,0,0.5647304101948,0.109940516745429,1.66059127923341,3.00979216620984,0.218559560503957,0,0,7.3059729601504,0,0,0,0,0,0,0,5.17806421956407,0.352894871715692,2.48748236736422,4.3820183294791,1.37618785021362,0,0,0.339957450954573,0,1.0580536810308,0,0,0,0,0.109265571963696,0,0,0,0,0,0.0757786982182394,0.267964130156178,0,0,1.27940389140589,1.66645102024618,0,0,0.560659312903067,0.572824424503484,0.404234377916439,0.653150243690884,0,1.75115337837928,5.1639987882727,0.665320713092027,0.325613074443898,0.106727345877715,0,1.25755282949222,0,0.122241444182866,0,1.33151354837103,0,0 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| ||
|short_description=p4@TMC5 | |||
}} | }} |
Latest revision as of 23:41, 24 September 2015
Short description: | p4@TMC5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TMC5_5end |
Coexpression cluster: | C3539_lung_adenocarcinoma_trachea_gastric_somatostatinoma_Hep2_signet |
Association with transcript: | -12bp_to_ENST00000541464, uc010vaq.1_5end |
EntrezGene: | TMC5 |
HGNC: | 22999 |
UniProt: | F5GYU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.93e-09 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 4.16e-26 | 9 |
subdivision of digestive tract | 4.96e-24 | 118 |
respiratory primordium | 5.34e-24 | 38 |
endoderm of foregut | 5.34e-24 | 38 |
digestive system | 2.36e-20 | 145 |
digestive tract | 2.36e-20 | 145 |
primitive gut | 2.36e-20 | 145 |
foregut | 2.72e-19 | 87 |
respiratory tract | 4.04e-19 | 54 |
endoderm-derived structure | 9.68e-19 | 160 |
endoderm | 9.68e-19 | 160 |
presumptive endoderm | 9.68e-19 | 160 |
respiratory system | 7.68e-17 | 74 |
segment of respiratory tract | 4.84e-14 | 47 |
upper respiratory tract | 6.32e-14 | 19 |
epithelial bud | 1.53e-10 | 37 |
lung | 1.71e-09 | 22 |
respiratory tube | 1.71e-09 | 22 |
respiration organ | 1.71e-09 | 22 |
pair of lungs | 1.71e-09 | 22 |
lung primordium | 1.71e-09 | 22 |
lung bud | 1.71e-09 | 22 |
organ system subdivision | 3.72e-08 | 223 |
biliary system | 7.97e-08 | 9 |
biliary tree | 7.97e-08 | 9 |
biliary bud | 7.97e-08 | 9 |
epithelial fold | 1.14e-07 | 47 |
primordium | 3.77e-07 | 160 |
thoracic cavity element | 6.43e-07 | 34 |
thoracic cavity | 6.43e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.80e-33 | 106 |
cell type cancer | 2.87e-23 | 143 |
cancer | 1.83e-12 | 235 |
disease of cellular proliferation | 5.54e-12 | 239 |
adenocarcinoma | 9.12e-10 | 25 |
respiratory system cancer | 4.38e-08 | 16 |
signet ring cell adenocarcinoma | 6.32e-07 | 2 |