FFCP PHASE1:Hg19::chr19:15218106..15218117,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:15218106..15218117,+ to FFCP PHASE1:Hg19::chr19:15218106..15218117,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=85360 | |EntrezGene=85360 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25824 | |HGNC=25824 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZW31 | |UniProt=Q6ZW31 | ||
|association_with_transcript=-96bp_to_ENST00000342784,NM_033025,uc002nah.1,uc002nai.1_5end | |||
|cluster_id=chr19:15218106..15218117,+ | |||
|description=CAGE_peak_2_at_SYDE1_5end | |||
|id=chr19:15218106..15218117,+ | |||
|ontology_enrichment_celltype=CL:0000055!2.44e-21!180;CL:0000183!1.71e-08!59;CL:0000680!7.80e-08!57;CL:0000056!7.80e-08!57;CL:0000355!7.80e-08!57;CL:0000393!2.29e-07!60;CL:0000211!2.29e-07!60;CL:0000359!5.91e-07!32;CL:0000187!6.41e-07!54;CL:0000192!7.06e-07!42;CL:0000514!7.06e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000359;3.76e-14;32!CL:0002567;6.01e-14;3!CL:0000192;4.22e-10;43!CL:0002593;5.12e-10;2!CL:1000746;5.19e-10;7!CL:1000612;5.19e-10;7!CL:0000650;1.41e-09;2!CL:1000500;1.41e-09;2!CL:1000618;1.41e-09;2!CL:1001318;1.41e-09;2!CL:0002173;1.41e-09;2!CL:0002595;1.52e-08;5!CL:1000449;6.12e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,3.70e-14,32;CL:0002567,3.77e-14,3;CL:0000192,5.12e-14,43;CL:0000514,5.12e-14,43;CL:0000680,2.61e-13,58;CL:0000056,2.61e-13,58;CL:0000355,2.61e-13,58;CL:0000187,2.96e-12,55;CL:0000393,9.44e-11,61;CL:0000211,9.44e-11,61;CL:0002593,5.67e-10,2;CL:1000746,6.07e-10,7;CL:1000612,6.07e-10,7;CL:0000650,1.62e-09,2;CL:1000500,1.62e-09,2;CL:1000618,1.62e-09,2;CL:1001318,1.62e-09,2;CL:0002173,1.62e-09,2;CL:0002595,1.07e-08,5;CL:0000222,2.18e-08,121;CL:1000449,5.93e-07,15 | |||
|ontology_enrichment_development_v019=CL:0000514;4.22e-10;43!CL:0000355;1.18e-08;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!3.81e-10!365;UBERON:0000914!1.16e-09!83;UBERON:0002329!1.16e-09!83;UBERON:0003077!1.16e-09!83;UBERON:0003059!1.16e-09!83;UBERON:0007282!1.16e-09!83;UBERON:0009618!1.16e-09!83;UBERON:0007285!1.16e-09!83;UBERON:0000481!1.18e-09!347;UBERON:0004290!1.99e-08!70;UBERON:0000468!2.49e-08!659;UBERON:0005256!3.80e-08!143;UBERON:0000486!1.42e-07!82;UBERON:0002385!2.59e-07!63;UBERON:0001015!2.59e-07!63;UBERON:0000383!2.59e-07!63;UBERON:0001134!3.08e-07!61;UBERON:0002036!3.08e-07!61;UBERON:0003082!3.08e-07!61;UBERON:0000119!7.53e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0003513;2.99e-10;7!UBERON:0002456;5.12e-10;2!UBERON:0000074;5.19e-10;7!UBERON:0001229;5.19e-10;7!UBERON:0000353;9.47e-10;15!UBERON:0003567;1.41e-09;2!UBERON:0003838;1.41e-09;2!UBERON:0003586;1.41e-09;2!UBERON:0005169;1.41e-09;2!UBERON:0002321;1.41e-09;2!UBERON:0005215;1.41e-09;2!UBERON:0002303;1.41e-09;2!UBERON:0002319;1.41e-09;2!UBERON:0003834;1.52e-08;5!UBERON:0001533;1.52e-08;5!UBERON:0001637;8.79e-08;42!UBERON:0003509;8.79e-08;42!UBERON:0004572;8.79e-08;42!UBERON:0001851;4.51e-07;15!UBERON:0006555;6.12e-07;15!UBERON:0004819;6.12e-07;15!UBERON:0001285;6.12e-07;15!UBERON:0007684;6.12e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,2.52e-19,78;UBERON:0005256,3.77e-16,122;UBERON:0003104,1.41e-14,160;UBERON:0009142,1.41e-14,160;UBERON:0001134,3.75e-14,62;UBERON:0002036,3.75e-14,62;UBERON:0003082,3.75e-14,62;UBERON:0002329,1.26e-13,71;UBERON:0003059,1.26e-13,71;UBERON:0007282,1.26e-13,71;UBERON:0004290,1.26e-13,71;UBERON:0009618,1.26e-13,71;UBERON:0002385,1.35e-13,64;UBERON:0001015,1.35e-13,64;UBERON:0000383,1.35e-13,64;UBERON:0003077,2.20e-13,72;UBERON:0007285,2.20e-13,72;UBERON:0007524,3.80e-13,73;UBERON:0000486,1.23e-12,83;UBERON:0003914,2.38e-11,117;UBERON:0003513,1.82e-10,7;UBERON:0001637,2.91e-10,42;UBERON:0003509,2.91e-10,42;UBERON:0004572,2.91e-10,42;UBERON:0002456,5.67e-10,2;UBERON:0010532,6.07e-10,7;UBERON:0000074,6.07e-10,7;UBERON:0001229,6.07e-10,7;UBERON:0001230,6.07e-10,7;UBERON:0003220,6.07e-10,7;UBERON:0005749,6.07e-10,7;UBERON:0004199,6.07e-10,7;UBERON:0004209,6.07e-10,7;UBERON:0004198,6.07e-10,7;UBERON:0000353,1.30e-09,15;UBERON:0003567,1.62e-09,2;UBERON:0003838,1.62e-09,2;UBERON:0003586,1.62e-09,2;UBERON:0005169,1.62e-09,2;UBERON:0002321,1.62e-09,2;UBERON:0005215,1.62e-09,2;UBERON:0002303,1.62e-09,2;UBERON:0002319,1.62e-09,2;UBERON:0002100,1.69e-09,199;UBERON:0005103,1.04e-08,8;UBERON:0000083,1.04e-08,8;UBERON:0009201,1.04e-08,8;UBERON:0006553,1.04e-08,8;UBERON:0003074,1.04e-08,8;UBERON:0003060,1.04e-08,8;UBERON:0003834,1.07e-08,5;UBERON:0001533,1.07e-08,5;UBERON:0007500,4.49e-08,59;UBERON:0001981,4.49e-08,59;UBERON:0004537,4.49e-08,59;UBERON:0006965,4.49e-08,59;UBERON:0000490,5.57e-08,148;UBERON:0000080,9.51e-08,9;UBERON:0002120,9.51e-08,9;UBERON:0004875,9.51e-08,9;UBERON:0005721,9.51e-08,9;UBERON:0005754,9.51e-08,9;UBERON:0007297,9.51e-08,9;UBERON:0000058,1.84e-07,19;UBERON:0004573,2.39e-07,33;UBERON:0004571,2.39e-07,33;UBERON:0004872,2.88e-07,83;UBERON:0001851,5.06e-07,15;UBERON:0004211,5.93e-07,15;UBERON:0009773,5.93e-07,15;UBERON:0001231,5.93e-07,15;UBERON:0001285,5.93e-07,15;UBERON:0007684,5.93e-07,15;UBERON:0004208,5.93e-07,15 | |||
|phase1_expression=0.908391896352783,0.214100523890983,0.563817616383885,0,0,0,0,0,0.261185628199839,0.982935746006035,1.39560233594486,0,0,0.990130823680373,0.662794751455832,0.672325146451775,0,0.730310090387373,0.487932798790507,0.61560529038394,0.408001382488506,0.626909442956176,0,0.821246550437305,0.251085279189606,0,0,0,0,0,0,0,0.6024118375565,0.369754010166788,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0,0.255725123687061,0.361439152384566,0.50133791063589,0.289693037921647,0,0.973269740605272,0.283604451492204,0.221729397462564,0.614843499851882,0.327447688744282,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,0.347140501607594,0,0,0.550236083880135,0.417989933073621,0.516833518338658,0,0,0.402829317109147,0,0,0,0,0.17859945656816,0.44905874525234,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.529636723252875,0,0,0,2.1349799145941,0.49333509683432,0.311211035399766,0.269421344139376,0.163461903113459,0.605429710579726,0,0.468642863667593,0,0,0.896692083310806,0.704606991862589,0.647491777472526,0.561803226808994,0.408308342509787,0.491337269247072,0.103325781175765,0,0,0.910161361938026,0.718618141816238,0.505008341862199,0.375355559615893,0.277064115484183,0.438977620880838,0.30648779579902,0.150238058906597,0,0.717558542755448,0.427114777637135,0,0,0.206105058476878,0.257640540045629,0.18611685633159,0.168776332241266,0.779496041289589,0,0.368199594569197,0.161646056818812,0.355009592516614,0.705264687593482,0.67824236924195,0,0.818238361772504,0,0,0.132529768321485,0.232387885739037,0.10366105501537,0,0,0,0.643240938192885,1.38134921352481,0,0,0.354920400119532,1.18009283054671,0.241011029883482,0.441175890929576,0,0.237270619111097,0,0.196221465125346,0,0,1.40241773803446,0.4115740113314,1.47008711385542,0,0,0,0,0,0.686271241194102,0.219500570817251,0,0.100528972411631,0.0925884451585296,0,0,0,0.231860809950154,0.352226082707465,0,0.462985512576611,0,0,0.858486162094873,0,0,0,0,0.335964256397719,0,0,0,0.766765358330422,0,0,0,0,0,0.507983154337352,1.14596527667483,2.34434894420094,1.71072446022705,0.514137463516618,0.600686115687835,0.857479297891735,0.448524337381443,0,0.7333828582095,0.517086863031111,0,0,0.26593811658487,0,0.514414748524284,0,1.5985330740966,0.285955987316295,1.08524321078289,0,0,0,1.58390374586686,0,0,0,0,0,0,0.479249710983165,0,0,0.723906533337896,0.205476322550383,1.25342674267927,0,0,0,0,0.254094624222463,0,0.773288812777695,0.502548796003046,0.637938751653163,0,0,0,0.49076596687656,0.500170521059677,0,0.415941723061614,1.07057393278297,0.473107245101804,0,0.601892199455438,0,0,0.664225598535437,0.368738337083406,0.0868836144680828,0.783204629850962,0.343143423810856,0,0,0,0,0,0.604780586659361,0.992431231275107,0,0,0.384417447767103,0,0.321707842287215,0,0.308419387605311,0.532685175939381,0.164254312027618,0,0.116210378459959,0,0.40101294060657,0,0.34444334449382,0.546273504020151,0,0.451199612907412,0.15403067420883,0,1.46139224653261,0,1.13733384070897,0.170093705276516,0,0,1.08378575017541,1.50506932156456,0,0,0.223874754722178,0,0,0.512900250232778,0.984043937099117,0,0.103041011647722,0.54941678891006,0.41254749960294,0,0,0,0.096670718292122,0,0.307007349452259,0.275673144969061,0,0.290033387828457,0.340906509664404,0.534192213880424,0.165284915360978,0,0.255225424989168,0,0,0,1.3940745403212,1.84820148105653,1.06461206063404,0,1.8532421910392,0.429374660225974,0,0.632758849437452,0.190630193923825,0.767693373934002,0,0.636406495851874,0.78494864019923,0.179872457583315,0,0,1.41527737101321,0,0,0,1.21856744815642,2.11300293513511,0.272999822815972,0.282810863907425,1.13008116620243,1.65409603063837,0,0,1.15755106853338,0,0.811641507850816,0.92947049429925,1.12678241012897,0.286822704408103,0.294747123039363,1.07001315444375,1.06428319221179,0,0.329294892959902,1.13841952129715,0.699869440489966,0.0962221127255121,0,0,0.282431402330337,0,0,1.33029046061003,0,0,0,0,0,0,0,0,0,0.106824071127473,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439524537815682,2.06312886974173,0,0.284136146806413,0,0,0.307160702099232,0,0.281338832821026,0.445234820091624,0,0,0.19924798825107,0.276283915531148,0,0.511343412510774,0,0.311039587661807,0.0898683511473268,0,0,0.394573622547734,0,1.11136990144637,0,0.185536196323703,0,0,0,0,0.1137934482855,0,0.236387681767936,0,0.291604613383254,0.694499979733169,0,0.241192877250816,0,0.331737779793674,0,0,0.10893846351899,0.139423744278603,0.692552326534174,1.02547850262301,0.23056390438806,0.0897576444097721,0,0,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0.158936578980379,0.210998064528027,0,0,0.649165919226273,0,0.0884575645033392,0.611030144933625,0,0,0,0.269604531922708,1.60515529459758,0.234264445725339,0,0.19566461893209,0.242780379534093,0,0,0,0.505492637027904,0.60129367765797,0.72581733978073,0.664653872707185,0,0,1.194724297729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| ||
|short_description=p2@SYDE1 | |||
}} | }} |
Latest revision as of 06:43, 16 September 2015
Short description: | p2@SYDE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SYDE1_5end |
Coexpression cluster: | NA |
Association with transcript: | -96bp_to_ENST00000342784, NM_033025, uc002nah.1, uc002nai.1_5end |
EntrezGene: | SYDE1 |
HGNC: | 25824 |
UniProt: | Q6ZW31 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 3.70e-14 | 32 |
light melanocyte | 3.77e-14 | 3 |
smooth muscle cell | 5.12e-14 | 43 |
smooth muscle myoblast | 5.12e-14 | 43 |
muscle precursor cell | 2.61e-13 | 58 |
myoblast | 2.61e-13 | 58 |
multi-potent skeletal muscle stem cell | 2.61e-13 | 58 |
muscle cell | 2.96e-12 | 55 |
electrically responsive cell | 9.44e-11 | 61 |
electrically active cell | 9.44e-11 | 61 |
smooth muscle cell of the internal thoracic artery | 5.67e-10 | 2 |
glomerular cell | 6.07e-10 | 7 |
kidney corpuscule cell | 6.07e-10 | 7 |
mesangial cell | 1.62e-09 | 2 |
kidney interstitial cell | 1.62e-09 | 2 |
juxtaglomerular complex cell | 1.62e-09 | 2 |
renal interstitial pericyte | 1.62e-09 | 2 |
extraglomerular mesangial cell | 1.62e-09 | 2 |
smooth muscle cell of the subclavian artery | 1.07e-08 | 5 |
mesodermal cell | 2.18e-08 | 121 |
epithelial cell of nephron | 5.93e-07 | 15 |