FFCP PHASE1:Hg19::chr19:48825121..48825168,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr19:48825121..48825168,- to FFCP PHASE1:Hg19::chr19:48825121..48825168,-: NSchange) |
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(10 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=93233 | |EntrezGene=93233 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26560 | |HGNC=26560 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000497803,ENST00000504608_5end | |||
|cluster_id=chr19:48825121..48825168,- | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_1_at_CCDC114_5end | |||
|id=chr19:48825121..48825168,- | |||
|ontology_enrichment_celltype=CL:0000988!1.83e-18!182;CL:0000037!2.21e-17!172;CL:0000566!2.21e-17!172;CL:0000738!4.92e-16!140;CL:0002032!4.38e-15!165;CL:0000837!4.38e-15!165;CL:0002031!4.18e-13!124;CL:0002087!2.02e-12!119;CL:0000838!5.87e-09!52;CL:0000542!9.51e-09!53;CL:0000051!9.51e-09!53;CL:0000791!8.22e-08!18;CL:0000789!8.22e-08!18;CL:0002420!8.22e-08!18;CL:0002419!8.22e-08!18;CL:0000790!8.22e-08!18;CL:0000084!9.58e-08!25;CL:0000827!9.58e-08!25;CL:0000763!1.90e-07!112;CL:0000049!1.90e-07!112;CL:0000860!3.47e-07!45;CL:0002057!7.77e-07!42 | |||
|ontology_enrichment_celltype_v019=CL:0000791;2.01e-13;18!CL:0000789;2.01e-13;18!CL:0002419;2.01e-13;18!CL:0000084;4.94e-10;25!CL:0000624;1.49e-08;6!CL:0000625;7.00e-08;11!CL:0000542;1.55e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.65e-18,136;CL:0000037,1.66e-18,168;CL:0000988,3.21e-18,177;CL:0002032,2.74e-16,161;CL:0000837,2.74e-16,161;CL:0002031,1.46e-14,120;CL:0000791,4.05e-14,18;CL:0000789,4.05e-14,18;CL:0002420,4.05e-14,18;CL:0002419,4.05e-14,18;CL:0000790,4.05e-14,18;CL:0002087,1.51e-13,115;CL:0000838,7.63e-13,52;CL:0000542,1.84e-12,53;CL:0000051,1.84e-12,53;CL:0000084,1.33e-10,25;CL:0000827,1.33e-10,25;CL:0000624,3.15e-09,6;CL:0000625,4.61e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000790;2.01e-13;18!CL:0000051;1.55e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.10e-15!57;UBERON:0005068!3.10e-15!57;UBERON:0006241!3.10e-15!57;UBERON:0007135!3.10e-15!57;UBERON:0002616!3.93e-12!59;UBERON:0002780!4.64e-12!41;UBERON:0001890!4.64e-12!41;UBERON:0006240!4.64e-12!41;UBERON:0003080!2.61e-11!42;UBERON:0002346!1.83e-10!90;UBERON:0003075!5.23e-10!86;UBERON:0007284!5.23e-10!86;UBERON:0000955!6.03e-10!69;UBERON:0006238!6.03e-10!69;UBERON:0005743!8.18e-10!86;UBERON:0001017!1.00e-09!82;UBERON:0002791!1.22e-09!33;UBERON:0002020!1.40e-09!34;UBERON:0003528!1.40e-09!34;UBERON:0002390!1.42e-09!102;UBERON:0003061!1.42e-09!102;UBERON:0001893!1.87e-09!34;UBERON:0001869!1.48e-08!32;UBERON:0003056!3.11e-08!61;UBERON:0002193!7.80e-08!112;UBERON:0000073!1.06e-07!94;UBERON:0001016!1.06e-07!94;UBERON:0002619!1.08e-07!22;UBERON:0000956!1.24e-07!25;UBERON:0000203!1.24e-07!25;UBERON:0002371!5.47e-07!80 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;3.31e-13;53!UBERON:0002616;3.31e-13;53!UBERON:0002780;1.69e-11;41!UBERON:0001890;1.69e-11;41!UBERON:0002791;1.75e-10;32!UBERON:0003528;2.20e-10;34!UBERON:0002020;2.20e-10;34!UBERON:0001893;4.99e-10;34!UBERON:0001869;2.77e-09;32!UBERON:0002619;2.26e-08;22!UBERON:0000956;2.95e-08;25!UBERON:0000203;2.95e-08;25 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.43e-20,56;UBERON:0005068,6.43e-20,56;UBERON:0006241,6.43e-20,56;UBERON:0007135,6.43e-20,56;UBERON:0000073,1.79e-18,53;UBERON:0002616,1.79e-18,53;UBERON:0002780,1.40e-14,41;UBERON:0001890,1.40e-14,41;UBERON:0003080,1.40e-14,41;UBERON:0006240,1.40e-14,41;UBERON:0001893,1.36e-12,34;UBERON:0003528,1.53e-12,34;UBERON:0002020,1.53e-12,34;UBERON:0002791,2.60e-12,32;UBERON:0000955,3.31e-12,68;UBERON:0006238,3.31e-12,68;UBERON:0001017,9.83e-12,81;UBERON:0003075,1.59e-11,82;UBERON:0007284,1.59e-11,82;UBERON:0001869,8.70e-11,32;UBERON:0002346,1.41e-10,86;UBERON:0001016,1.06e-09,89;UBERON:0002619,1.21e-08,22;UBERON:0010371,1.39e-08,104;UBERON:0003056,1.54e-08,61;UBERON:0000956,2.02e-08,25;UBERON:0000203,2.02e-08,25;UBERON:0007023,4.03e-08,114;UBERON:0002390,6.32e-07,98;UBERON:0003061,6.32e-07,98;UBERON:0001950,9.42e-07,20 | |||
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|phase1_expression=0.363356758541113,0.214100523890983,0,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0.491467873003018,4.88460817580699,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0.61560529038394,0.816002764977012,0.626909442956176,1.14494394852423,0.273748850145768,0.251085279189606,0.305653622991805,0.410502947249729,1.02324015707783,2.36018566109342,1.15148819429164,0.464448369948228,0.919421224478927,0.90361775633475,0,0.542270404062111,0.710846162437108,3.22960483268332,0.553995408531877,0.802177789880567,1.73608696572681,0.223915474239924,0.647787332037959,0.257575567634187,1.16318591023652,0.755751887377619,1.4555043671269,0.697287110717054,0.822335776043652,0.619412741790207,0,0.512321413058201,0.236482229888585,1.03423704220986,0,1.35426486594342,1.31769637679823,0.545812300115692,0,0.306083892370903,0.320929027076094,1.27867425159808,0.329851300186716,0.199463657621632,0,0.580418477257168,1.70215567407342,0.622822248995575,0.75374599577023,0.521482918420201,0.434377689410233,0.605399502633369,0,0.949387162322653,1.26753171787165,3.61427309940574,1.88692780957538,1.12328631146495,1.20141514273205,0.64290234678832,1.71007646244749,1.39241674039363,0.365328307529268,0,0,1.77901850772711,4.69403244823158,0.400395987036012,1.72425731986345,0,0,4.55370375287559,2.93618594685469,4.96955196562797,2.64342657158052,0.560508562981536,0.790152254325231,1.57367816091066,1.96505381374582,2.87842098599313,0.167186495390678,1.62961133316795,0,1.94826728407911,0.557052284425868,1.76763544484902,0.886135578334485,1.08321545506006,0.896639238079726,1.43065282315866,0.822189523018381,0.552700035571697,0.579606171470105,0.889719378972363,1.33770414044857,0,0.339928028092699,1.14966148080576,0.34362744548263,0.253019692019503,0.95569624297229,1.30216690771284,0,0.301150238155546,1.53583933385302,1.24930726552346,1.4206635122641,1.64225599384209,2.41928091869679,2.94184215361858,2.17236605824198,0,0,0.12786256184353,0,0,0.434539556882471,0,0,0.661743720148475,0.221729397462564,0.351339142772504,10.8712632663101,0.364295288292542,0,0,0,0,2.38490624305342,2.28797964312051,0.371457501329565,0,0.860234595106124,0,0,0.838998872419812,0.550236083880135,0.417989933073621,0,0,0.33472061276467,0.402829317109147,0.760272105718513,0.24406205754817,0.367663080345869,0.81014194788176,0.17859945656816,0.673588117878509,0,3.06633274931766,0.949265659568129,0.366403487860815,1.31780417436063,0,0.436094052142534,0,0,0.397227542439656,0.286836620748814,0.354668382198357,0,2.1349799145941,0.24666754841716,0,0.269421344139376,0.817309515567294,0.302714855289863,0,0.234321431833797,0,0,0,0.117434498643765,0,0.140450806702248,0.61246251376468,0.737005903870608,0.206651562351531,0,0,0,0,0.505008341862199,0,0,0,0,0.300476117813194,0.113432183160021,0.538168907066586,0,0.423863802319124,0,0,0.515281080091258,0.558350568994769,0,0.487185025805993,0.252433774244115,0.184099797284599,0.969876340912871,0.355009592516614,0.302256294682921,0.508681776931463,0.193260853163297,0.272746120590835,0,0.121973706129595,0,0.232387885739037,0,0.252320850875628,0,0,1.28648187638577,0,0,0,0.591534000199219,0.337169380156203,0.482022059766964,0.772057809126758,0.653638332277218,0.71181185733329,0.269662616320329,0.392442930250692,0.38474715694639,0.738155454624648,1.40241773803446,0,0,0,0,0,0.882926198829301,0.245976877086227,0,0.109750285408626,0,0,0,0.325808305310325,1.03993478527958,0,0,0,0.144366447761074,0,0.380508304469197,5.53143078571493,4.29243081047436,0,0.468008530278475,0.445893486866185,0,0,0,0.0895585227028483,0,0,0.985326475791887,0.528290604079356,2.28060927094849,2.01767934783746,3.1560608356595,0,0,0,1.71072446022705,0.616964956219941,0.600686115687835,0.571652865261156,0.224262168690721,0,0.1466765716419,0,0,0,0.26593811658487,0,0.257207374262142,1.41849132023278,1.5985330740966,0.142977993658148,0,0,0,0.355391948742546,0,0.301439377059586,0,0,1.2162378064119,0,0,0.239624855491583,1.14861935834114,0,0.289562613335158,0.205476322550383,0.895304816199478,0.448340575974109,3.15249216323084,3.88129634747131,5.90377966886842,0.76228387266739,2.60279707715243,0.773288812777695,0.167516265334349,0,3.74503511973591,0,4.97298616123243,0.24538298343828,0.500170521059677,0,0,0.178428988797162,0.157702415033935,0,0,0,1.03473071292505,0,0,0.347534457872331,0.195801157462741,0.686286847621712,2.06768026122887,1.2942852049117,0.960548020230999,1.5156378572313,1.66435439510497,0.30239029332968,0,0.153461973288062,0,0.384417447767103,0,0,0,0.308419387605311,0,0.164254312027618,0,0.348631135379878,0.241718899183244,0,0,0,0.364182336013434,0,0,0.0770153371044148,0,0,0.105551628892876,0,0.340187410553031,0,4.62681758070868,0.270946437543853,0.501689773854853,0.254876273045038,0,0.447749509444357,0,0,0.256450125116389,0.328014645699706,0.325378394664303,0.309123034943167,0.640986253728404,0.247528499761764,0,0,0,0.193341436584244,0.462145851343933,0.307007349452259,0.275673144969061,0.214840489736547,0.145016693914229,0.170453254832202,0.26709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| ||
|short_description=p1@CCDC114 | |||
}} | }} |
Latest revision as of 01:46, 19 September 2015
Short description: | p1@CCDC114 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC114_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 0bp_to_ENST00000497803, ENST00000504608_5end |
EntrezGene: | CCDC114 |
HGNC: | 26560 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.65e-18 | 136 |
hematopoietic stem cell | 1.66e-18 | 168 |
hematopoietic cell | 3.21e-18 | 177 |
hematopoietic oligopotent progenitor cell | 2.74e-16 | 161 |
hematopoietic multipotent progenitor cell | 2.74e-16 | 161 |
hematopoietic lineage restricted progenitor cell | 1.46e-14 | 120 |
mature alpha-beta T cell | 4.05e-14 | 18 |
alpha-beta T cell | 4.05e-14 | 18 |
immature T cell | 4.05e-14 | 18 |
mature T cell | 4.05e-14 | 18 |
immature alpha-beta T cell | 4.05e-14 | 18 |
nongranular leukocyte | 1.51e-13 | 115 |
lymphoid lineage restricted progenitor cell | 7.63e-13 | 52 |
lymphocyte | 1.84e-12 | 53 |
common lymphoid progenitor | 1.84e-12 | 53 |
T cell | 1.33e-10 | 25 |
pro-T cell | 1.33e-10 | 25 |
CD4-positive, alpha-beta T cell | 3.15e-09 | 6 |
CD8-positive, alpha-beta T cell | 4.61e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
neural tube | 6.43e-20 | 56 |
neural rod | 6.43e-20 | 56 |
future spinal cord | 6.43e-20 | 56 |
neural keel | 6.43e-20 | 56 |
regional part of nervous system | 1.79e-18 | 53 |
regional part of brain | 1.79e-18 | 53 |
regional part of forebrain | 1.40e-14 | 41 |
forebrain | 1.40e-14 | 41 |
anterior neural tube | 1.40e-14 | 41 |
future forebrain | 1.40e-14 | 41 |
telencephalon | 1.36e-12 | 34 |
brain grey matter | 1.53e-12 | 34 |
gray matter | 1.53e-12 | 34 |
regional part of telencephalon | 2.60e-12 | 32 |
brain | 3.31e-12 | 68 |
future brain | 3.31e-12 | 68 |
central nervous system | 9.83e-12 | 81 |
neural plate | 1.59e-11 | 82 |
presumptive neural plate | 1.59e-11 | 82 |
cerebral hemisphere | 8.70e-11 | 32 |
neurectoderm | 1.41e-10 | 86 |
nervous system | 1.06e-09 | 89 |
regional part of cerebral cortex | 1.21e-08 | 22 |
ecto-epithelium | 1.39e-08 | 104 |
pre-chordal neural plate | 1.54e-08 | 61 |
cerebral cortex | 2.02e-08 | 25 |
pallium | 2.02e-08 | 25 |
adult organism | 4.03e-08 | 114 |
hematopoietic system | 6.32e-07 | 98 |
blood island | 6.32e-07 | 98 |
neocortex | 9.42e-07 | 20 |