Coexpression cluster:C3280: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 3: | Line 3: | ||
|full_id=C3280_acute_somatostatinoma_neuroblastoma_small_choriocarcinoma_bile_signet | |full_id=C3280_acute_somatostatinoma_neuroblastoma_small_choriocarcinoma_bile_signet | ||
|id=C3280 | |id=C3280 | ||
|ontology_enrichment_celltype=CL:0000066! | |ontology_enrichment_celltype=CL:0000066!1.67e-26!253;CL:0000548!2.65e-18!679;CL:0000255!2.65e-18!679;CL:0000003!2.80e-11!722;CL:0002076!3.21e-11!42;CL:0000223!4.37e-10!58;CL:0002251!2.30e-07!20;CL:0002321!6.46e-07!250 | ||
|ontology_enrichment_disease=DOID: | |ontology_enrichment_disease=DOID:162!5.75e-30!235;DOID:14566!5.83e-30!239;DOID:0050687!2.87e-22!143;DOID:305!6.55e-21!106;DOID:0050686!1.24e-14!137 | ||
|ontology_enrichment_uberon=UBERON:0004119 | |ontology_enrichment_uberon=UBERON:0004119!2.60e-07!160;UBERON:0000925!2.60e-07!160;UBERON:0006595!2.60e-07!160 | ||
|tf_chipseq_enrich=ATF3#467;3:22.4631745260087:8.81932387510763e-05:0.00129329032040489!BRCA1#672;3:20.1842306432238:0.000121570486027164:0.00163997674892676!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189434545237991!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.011499923133877!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0278628851844894!CTCFL#140690;3:19.7464743589744:0.000129837200555116:0.00171342777214756!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0324063682221041!E2F4#1874;3:12.6680603152844:0.000491798700629898:0.00436092413780659!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.032090828493248!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0460578470396773!ELK4#2005;3:16.235681658468:0.000233604395574599:0.00255176335837418!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.0153714844501258!GTF2B#2959;3:31.9438299343242:3.06634405746243e-05:0.000626336606722705!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108435668980168!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0185995961020554!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00718765543026135!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0293487792589556!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0268858839714557!NR3C1#2908;3:14.973023331173:0.000297833119467548:0.00308187785237999!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0172467941454894!POU2F2#5452;3:9.10612405774252:0.00132416519268213:0.0088029591698618!RAD21#5885;3:10.3550338954563:0.000900491207356542:0.00662298600035985!REST#5978;3:9.65002871612802:0.00111263624711459:0.00765800823859237!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0275735802632012!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00308279379728753!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00541136861843588!USF1#7391;3:6.36149927720796:0.0038840405729056:0.018968684283081!USF2#7392;3:12.9921973850696:0.000455897939342781:0.0042072567718495!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0328300124541265!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0109010413403443 | |tf_chipseq_enrich=ATF3#467;3:22.4631745260087:8.81932387510763e-05:0.00129329032040489!BRCA1#672;3:20.1842306432238:0.000121570486027164:0.00163997674892676!CCNT2#905;3:6.33620157696263:0.00393075003576489:0.0189434545237991!CEBPB#1051;3:7.97114762582482:0.00197418705528856:0.011499923133877!CTCF#10664;3:5.36025637307503:0.006492509252767:0.0278628851844894!CTCFL#140690;3:19.7464743589744:0.000129837200555116:0.00171342777214756!E2F1#1869;3:4.90738921487932:0.00846098534723939:0.0324063682221041!E2F4#1874;3:12.6680603152844:0.000491798700629898:0.00436092413780659!E2F6#1876;3:5.01715573169739:0.0079176980688633:0.032090828493248!ELF1#1997;3:4.25809795880754:0.0129517987505461:0.0460578470396773!ELK4#2005;3:16.235681658468:0.000233604395574599:0.00255176335837418!GABPB1#2553;3:7.06768383618217:0.00283221282541742:0.0153714844501258!GTF2B#2959;3:31.9438299343242:3.06634405746243e-05:0.000626336606722705!HMGN3#9324;3:8.17854772335059:0.00182776694216421:0.0108435668980168!MAX#4149;3:6.45255550900712:0.00372191383426551:0.0185995961020554!MXI1#4601;3:9.9615716287593:0.00101147054125902:0.00718765543026135!MYC#4609;3:5.2222818716094:0.00702084375574015:0.0293487792589556!NFKB1#4790;3:5.48806342419384:0.00604938181565543:0.0268858839714557!NR3C1#2908;3:14.973023331173:0.000297833119467548:0.00308187785237999!PAX5#5079;3:6.66956553117783:0.00337029099967726:0.0172467941454894!POU2F2#5452;3:9.10612405774252:0.00132416519268213:0.0088029591698618!RAD21#5885;3:10.3550338954563:0.000900491207356542:0.00662298600035985!REST#5978;3:9.65002871612802:0.00111263624711459:0.00765800823859237!SIN3A#25942;3:5.40888472681514:0.00631896197799152:0.0275735802632012!SMC3#9126;3:15.0449328449328:0.000293582542037187:0.00308279379728753!TAF7#6879;3:11.4330694049239:0.000669018198194583:0.00541136861843588!USF1#7391;3:6.36149927720796:0.0038840405729056:0.018968684283081!USF2#7392;3:12.9921973850696:0.000455897939342781:0.0042072567718495!YY1#7528;3:4.91117074985386:0.00844145534180826:0.0328300124541265!ZNF263#10127;3:8.22184163701068:0.00179904392556587:0.0109010413403443 | ||
|tfbs_overrepresentation=0.147255,0.0586687,0.134243,0.0477154,0.199763,0.287811,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.0117644,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.167053,0.0831028,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.0109386,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.0128549,0.0641358,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.0283286,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.00662754,0.00664287,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.00013969,0.00726302,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.00183105,0.782949,0.268011,0.051522,0.0986134,0.00156905,0.0638737,0.629514,0.261553,0.446302,0.373681,0.309233,0.49143,0.330703,0.395854,0.329568,0.53472,0.615744,0.271958,0.292154,0.405773,0.39729,0.581713,0.230901,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.376924,0.129235,0.647576,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.0509673,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.21363,0.291709,0.448095,0.0563639,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.0694028,0.18237,0.0359955,0.248484,0.400457,0.275351,0.236471,0.185661,0.0684159,0.0427964,0.270984,0.0772647,0.503058,0.513852,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.421596,0.581837,0.412837,0.305671,0.546839,0.551561,0.448039,0.218623,0.312808,0.695172,0.0451077,0.0747529,0.229003,0.00449125,0.061213,0.50215,0.294698,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.490301,0.428671,0.228096,0.336314,0.19763,0.15631,0.20495,0.421464,0.48267,0.420626,0.516462,0.582303,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.2348,0.503082,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.166672,0.206222,0.171685,0.651524,0.437176,0.269226,0.339277,0.192529,0.281425,0.141758,0.124432,0.168058,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.0095312,0.10689,0.0413156,0.0627924,0.381386,0.0179103,0.00605613,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.166024,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.0109933,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.00117737,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.739716,0.288159,0.21727,0.00514993,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.76084,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.220462,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0972686,0.619906,0.0360851,0.0168763,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.43956,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.406019,0.381071,0.580441,0.0863135,0.432035,0.722159,0.390366,0.145312,0.50058,0.443185,0.522904,0.3468,0.60734,0.227104,0.518585,0.0734371,0.38649,0.284625,0.504757,0.0091887,0.144318,0.28907,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.442897,0.390974,0.149257,0.683217,0.161598,0.013901,0.277094,0.496032,0.21803,0.37357,0.78509,0.477353,0.069689,0.160298,0.185744,0.20342,0.200493,0.20558,0.300504,0.0361545,0.107337,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.194707,0.616388,0.408413,0.516511,0.322213,0.28903,0.33942,0.0700181,0.387276,0.00694606,0.802166,0.0433137,0.222037,0.416621,0.416292,0.462712,0.382478,0.579431,0.204817,0.452428,0.138871,0.673493,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.373557,0.523625,0.408861,0.0768488,0.534741,0.39088,0.363192,0.00266072,0.203486,0.273398,0.375787,0.119167,0.0704514,0.275347,0.637444,0.305885,0.241132,0.371414,0.30666,0.0516603,0.000713369,0.0135408,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.129584,0.601877,0.307334,0.459728,0.283463,0.563586,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.0690807,0.387069,0.332774,0.52832,0.299887,0.00375452,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.0358457,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,5.91485e-06,0.000145586,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.0223377,0.21382,0.0232077,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.0037817,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.0385243,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.0164735,0.157274,0.215705,0.252796,0.205954,0.361435 | |tfbs_overrepresentation=0.147255,0.0586687,0.134243,0.0477154,0.199763,0.287811,0.0430074,0.101122,0.03272,0.0257057,0.139423,0.225367,0.188771,0.125978,0.148679,0.0619003,0.140982,0.0982016,0.0528514,0.108057,0.188635,0.132577,0.081977,0.0948982,0.0415721,0.215492,0.209392,0.0907212,0.143747,0.0933697,0.204953,0.114046,0.0180314,0.208242,0.0665252,0.0844722,0.688181,0.0429682,0.120351,0.0667043,0.0964797,0.0246116,0.140039,0.184019,0.120917,0.0362416,0.0380166,0.18151,0.111283,0.121201,0.154071,0.0541794,0.0701653,0.0929951,0.198787,0.0384161,0.107455,0.212709,0.0783235,0.105572,0.0294301,0.0117644,0.108602,0.0759481,0.054569,0.0504887,0.0709764,0.0600088,0.0860723,0.167053,0.0831028,0.067678,0.089036,0.119383,0.00747605,0.0171177,0.0964936,0.0436945,0.0372495,0.00725252,0.0956287,0.226912,0.0425,0.114846,0.291327,0.251834,0.064341,0.209032,0.608896,0.062747,0.0857568,0.0495878,0.0953825,0.0473737,0.0853887,0.115028,0.58489,0.153631,0.0927458,0.27413,0.0574857,0.276221,0.141874,0.0370665,0.219088,0.0409286,0.0669887,0.338096,0.0109386,0.269326,0.182599,0.0339971,0.149552,0.0176855,0.101221,0.0337525,0.0203386,0.0566549,0.139021,0.0838393,0.16671,0.214708,0.140123,0.0857827,0.102368,0.176912,0.0906875,0.0147934,0.0843604,0.134932,0.0595773,0.0748346,0.0572164,0.0227861,0.125792,0.108101,0.0648644,0.0553359,0.0330399,0.00395526,0.022776,0.127606,0.203923,0.0128549,0.0641358,0.0693171,0.0988228,0.0842275,0.0389418,0.120833,0.200647,0.143677,0.180712,0.0265818,0.0427088,0.117549,0.0747594,0.0283286,0.0516985,0.0337251,0.227719,0.0952829,0.116642,0.147788,0.273479,0.114283,0.0400322,0.127369,0.0403542,0.312091,0.179689,0.137725,0.46397,0.0541353,0.0799324,0.090079,0.140334,0.181817,0.178449,0.0356339,0.158844,0.122474,0.0274061,0.115574,0.0737247,0.118847,0.183031,0.0401756,0.0828697,0.173562,0.107145,0.187297,0.122935,0.228812,0.112671,0.0470731,0.0782523,0.0602859,0.0676496,0.109673,0.0893019,0.060398,0.0308319,0.0606036,0.136451,0.259411,0.27358,0.15185,0.206299,0.178359,0.0458667,0.104357,0.121154,0.00662754,0.00664287,0.169057,0.164202,0.100942,0.062995,0.10299,0.14193,0.37245,0.15606,0.161026,0.0738599,0.126611,0.0101199,0.085973,0.060453,0.059896,0.569726,0.384785,0.0418404,0.0765029,0.0959204,0.0931946,0.0472272,0.263087,0.163502,0.214803,0.182472,0.348993,0.0983991,0.0830921,0.116283,0.136838,0.0815104,0.111647,0.372804,0.117027,0.159052,0.185164,0.185743,0.0980288,0.0980899,0.159674,0.107242,0.201859,0.0695832,0.582402,0.0619218,0.1751,0.163376,0.128096,0.0345133,0.0810678,0.0811639,0.00013969,0.00726302,0.0755168,0.278352,0.063292,0.254773,0.446759,0.0865903,0.0380459,0.130174,0.584917,0.00183105,0.782949,0.268011,0.051522,0.0986134,0.00156905,0.0638737,0.629514,0.261553,0.446302,0.373681,0.309233,0.49143,0.330703,0.395854,0.329568,0.53472,0.615744,0.271958,0.292154,0.405773,0.39729,0.581713,0.230901,0.187251,0.362792,0.181715,0.423979,0.109988,0.330894,0.218329,0.427027,0.376924,0.129235,0.647576,0.528324,0.520763,0.370782,0.415647,0.484505,0.253571,0.276829,0.0509673,0.481778,0.316882,0.223503,0.503224,0.603208,0.283727,0.314747,0.21363,0.291709,0.448095,0.0563639,0.416816,0.292835,0.476744,0.439556,0.373868,0.57762,0.0694028,0.18237,0.0359955,0.248484,0.400457,0.275351,0.236471,0.185661,0.0684159,0.0427964,0.270984,0.0772647,0.503058,0.513852,0.522083,0.248634,0.281576,0.472384,0.163244,0.0670502,0.0730934,0.184794,0.596648,0.421596,0.581837,0.412837,0.305671,0.546839,0.551561,0.448039,0.218623,0.312808,0.695172,0.0451077,0.0747529,0.229003,0.00449125,0.061213,0.50215,0.294698,0.34331,0.477304,0.289204,0.327108,0.683186,0.278044,0.490301,0.428671,0.228096,0.336314,0.19763,0.15631,0.20495,0.421464,0.48267,0.420626,0.516462,0.582303,0.335105,0.144809,0.145539,0.385517,0.376191,0.447325,0.459928,0.252232,0.152681,0.0465712,0.137098,0.259235,0.134788,0.0985856,0.546222,0.293698,0.284593,0.343734,0.306556,0.305777,0.2348,0.503082,0.522888,0.284629,0.262537,0.359455,0.226257,0.405955,0.41707,0.363685,0.464871,0.166672,0.206222,0.171685,0.651524,0.437176,0.269226,0.339277,0.192529,0.281425,0.141758,0.124432,0.168058,0.159617,0.238587,0.372281,0.232251,0.189515,0.0891382,0.0595618,0.524997,0.625309,0.347298,0.539392,0.34988,0.475069,0.404569,0.6408,0.630264,0.316179,0.0697683,0.0556835,0.192544,0.0779981,0.0575676,0.144322,0.223391,0.203656,0.442884,0.441735,0.191777,0.111931,0.28934,0.0435386,0.303336,0.126478,0.0095312,0.10689,0.0413156,0.0627924,0.381386,0.0179103,0.00605613,0.279795,0.390395,0.0464827,0.169603,0.114583,0.104559,0.0899537,0.0866966,0.15983,0.107111,0.0438639,0.00389058,0.123593,0.129156,0.210369,0.193675,0.346372,0.0499762,0.0828956,0.0666953,0.182185,0.111277,0.219383,0.332809,0.19559,0.132201,0.188694,0.0481795,0.199971,0.406014,0.127758,0.175785,0.184486,0.169234,0.0876426,0.0952322,0.0112557,0.222432,0.107043,0.275244,0.00481323,0.173708,0.141119,0.211595,0.0300692,0.131551,0.0445237,0.052362,0.208866,0.153187,0.0797897,0.0974211,0.160149,0.123526,0.0906475,0.0558058,0.28262,0.166024,0.137332,0.0145999,0.0656973,0.211746,0.220538,0.0801488,0.0757897,0.161801,0.193215,0.0549034,0.0779715,0.0561838,0.0417636,0.0345419,0.0388736,0.254674,0.170307,0.201033,0.0488949,0.174921,0.370421,0.0330727,0.348757,0.219556,0.0394698,0.0596469,0.419264,0.122476,0.108872,0.11002,0.26144,0.0286025,0.549354,0.0109933,0.038848,0.0874516,0.0550279,0.144067,0.253693,0.217069,0.190048,0.131088,0.394069,0.237101,0.286988,0.0761239,0.172491,0.0818785,0.00117737,0.335058,0.147698,0.141463,0.167267,0.140622,0.0889592,0.309588,0.28711,0.0473033,0.094881,0.445524,0.132886,0.0774373,0.109194,0.128564,0.131452,0.687347,0.448776,0.051838,0.0993999,0.0500365,0.061829,0.0755121,0.0936516,0.144075,0.0340203,0.0741807,0.277091,0.739716,0.288159,0.21727,0.00514993,0.119215,0.192475,0.177967,0.547859,0.057571,0.047591,0.392974,0.0608699,0.175319,0.300597,0.0713214,0.223874,0.291114,0.0355833,0.125606,0.175094,0.911304,0.76084,0.206454,0.218192,0.108277,0.0673484,0.108748,0.0494066,0.0958493,0.205732,0.0755808,0.045654,0.110216,0.070276,0.226171,0.153469,0.0376916,0.13262,0.0450031,0.0539144,0.114242,0.0929549,0.172425,0.104948,0.221645,0.057168,0.234298,0.0759837,0.286863,0.152372,0.194941,0.218271,0.101607,0.327067,0.172982,0.340936,0.151597,0.0626744,0.191335,0.148574,0.504592,0.155821,0.0718905,0.0919008,0.0602373,0.144304,0.15063,0.0973823,0.15503,0.170295,0.193653,0.137219,0.228144,0.251466,0.288096,0.11903,0.0838874,0.331451,0.113145,0.112651,0.186638,0.174776,0.0948451,0.264079,0.249049,0.140533,0.0997756,0.0364628,0.103667,0.113069,0.025556,0.16791,0.09066,0.220462,0.166967,0.188651,0.0813902,0.184948,0.156261,0.311847,0.511859,0.0590944,0.247324,0.178389,0.218229,0.231073,0.0972686,0.619906,0.0360851,0.0168763,0.131093,0.0434602,0.133616,0.418146,0.36927,0.449036,0.407369,0.231447,0.544776,0.43956,0.37006,0.42622,0.448797,0.197484,0.396996,0.36145,0.406019,0.381071,0.580441,0.0863135,0.432035,0.722159,0.390366,0.145312,0.50058,0.443185,0.522904,0.3468,0.60734,0.227104,0.518585,0.0734371,0.38649,0.284625,0.504757,0.0091887,0.144318,0.28907,0.164197,0.462688,0.287881,0.574635,0.478174,0.336276,0.468444,0.258219,0.446557,0.243383,0.442897,0.390974,0.149257,0.683217,0.161598,0.013901,0.277094,0.496032,0.21803,0.37357,0.78509,0.477353,0.069689,0.160298,0.185744,0.20342,0.200493,0.20558,0.300504,0.0361545,0.107337,0.349197,0.383291,0.156104,0.141318,0.411941,0.0961477,0.314438,0.354789,0.163828,0.230581,0.120226,0.28424,0.562405,0.314429,0.181415,0.282286,0.194707,0.616388,0.408413,0.516511,0.322213,0.28903,0.33942,0.0700181,0.387276,0.00694606,0.802166,0.0433137,0.222037,0.416621,0.416292,0.462712,0.382478,0.579431,0.204817,0.452428,0.138871,0.673493,0.166905,0.19783,0.0833851,0.316453,0.48065,0.175199,0.332919,0.373557,0.523625,0.408861,0.0768488,0.534741,0.39088,0.363192,0.00266072,0.203486,0.273398,0.375787,0.119167,0.0704514,0.275347,0.637444,0.305885,0.241132,0.371414,0.30666,0.0516603,0.000713369,0.0135408,0.508064,0.250964,0.383276,0.457886,0.504711,0.220231,0.509064,0.196976,0.191517,0.129584,0.601877,0.307334,0.459728,0.283463,0.563586,0.472935,0.399569,0.273281,0.368095,0.275089,0.384593,0.47795,0.359231,0.339729,0.197805,0.0690807,0.387069,0.332774,0.52832,0.299887,0.00375452,0.205413,0.17639,0.0779009,0.276869,0.205298,0.0337138,0.18966,0.258854,0.188263,0.0719199,0.264884,0.162568,0.19104,0.163057,0.219428,0.208013,0.0900729,0.0953646,0.166124,0.252184,0.378361,0.0358457,0.20753,0.447185,0.179412,0.193601,0.220904,0.222977,0.341681,0.310674,0.21801,0.198614,0.186804,0.123324,0.199468,5.91485e-06,0.000145586,0.12405,0.179889,0.226869,0.27872,0.0855609,0.131118,0.20837,0.247588,0.222339,0.0673329,0.20847,0.266544,0.113092,0.145701,0.229428,0.162145,0.228955,0.168748,0.0384949,0.0660995,0.0521984,0.0455518,0.268741,0.201602,0.350452,0.154941,0.120196,0.0986735,0.108462,0.0595618,0.21593,0.158479,0.220319,0.195218,0.124213,0.259632,0.30793,0.180606,0.159884,0.257294,0.150733,0.217112,0.123917,0.184317,0.185335,0.0723291,0.258496,0.261744,0.0223377,0.21382,0.0232077,0.141867,0.193031,0.249101,0.115972,0.224568,0.246105,0.173026,0.200432,0.139785,0.197112,0.240478,0.156465,0.13108,0.256963,0.222798,0.172134,0.176789,0.0969345,0.202137,0.310405,0.280943,0.218161,0.0822373,0.202065,0.106739,0.0536053,0.0537737,0.15113,0.078016,0.0407233,0.0537355,0.319922,0.261724,0.211332,0.187731,0.233626,0.189559,0.0812887,0.0981146,0.064145,0.121913,0.0638699,0.104603,0.0663259,0.0762523,0.128736,0.109171,0.04411,0.066952,0.089609,0.0367455,0.13497,0.204393,0.295769,0.286691,0.347036,0.141729,0.0037817,0.255956,0.200105,0.227491,0.29837,0.253509,0.177664,0.28365,0.0385243,0.131761,0.160658,0.206239,0.19924,0.28689,0.236464,0.325148,0.115817,0.218052,0.223831,0.11528,0.194982,0.190993,0.281727,0.283218,0.249955,0.164638,0.224257,0.0935776,0.327622,0.225752,0.207791,0.0958756,0.0859274,0.316866,0.171683,0.158847,0.271275,0.071111,0.270604,0.101021,0.222548,0.0164735,0.157274,0.215705,0.252796,0.205954,0.361435 | ||
}} | }} | ||
Revision as of 14:57, 19 October 2012
Full id: C3280_acute_somatostatinoma_neuroblastoma_small_choriocarcinoma_bile_signet
Phase1 CAGE Peaks
| Hg19::chr12:46662478..46662504,- | p6@SLC38A1 |
| Hg19::chr12:46662513..46662549,- | p2@SLC38A1 |
| Hg19::chr12:46662553..46662572,- | p8@SLC38A1 |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
No GOStat results
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>
| Ontology term | p-value | n |
|---|---|---|
| epithelial cell | 1.67e-26 | 253 |
| animal cell | 2.65e-18 | 679 |
| eukaryotic cell | 2.65e-18 | 679 |
| native cell | 2.80e-11 | 722 |
| endo-epithelial cell | 3.21e-11 | 42 |
| endodermal cell | 4.37e-10 | 58 |
| epithelial cell of alimentary canal | 2.30e-07 | 20 |
| embryonic cell | 6.46e-07 | 250 |
| Ontology term | p-value | n |
|---|---|---|
| endoderm-derived structure | 2.60e-07 | 160 |
| endoderm | 2.60e-07 | 160 |
| presumptive endoderm | 2.60e-07 | 160 |
| Ontology term | p-value | n |
|---|---|---|
| cancer | 5.75e-30 | 235 |
| disease of cellular proliferation | 5.83e-30 | 239 |
| cell type cancer | 2.87e-22 | 143 |
| carcinoma | 6.55e-21 | 106 |
| organ system cancer | 1.24e-14 | 137 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
| Motifs | -log10(p-value) |
|---|---|
|
{{{tfbs_overrepresentation_jaspar}}} |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
(#promoters = Number of promoters in this coexpression cluster that have ChIP signal of the TF)
| TF | #promoters | Enrichment | p-value | q-value |
|---|---|---|---|---|
| ATF3#467 | 3 | 22.4631745260087 | 8.81932387510763e-05 | 0.00129329032040489 |
| BRCA1#672 | 3 | 20.1842306432238 | 0.000121570486027164 | 0.00163997674892676 |
| CCNT2#905 | 3 | 6.33620157696263 | 0.00393075003576489 | 0.0189434545237991 |
| CEBPB#1051 | 3 | 7.97114762582482 | 0.00197418705528856 | 0.011499923133877 |
| CTCF#10664 | 3 | 5.36025637307503 | 0.006492509252767 | 0.0278628851844894 |
| CTCFL#140690 | 3 | 19.7464743589744 | 0.000129837200555116 | 0.00171342777214756 |
| E2F1#1869 | 3 | 4.90738921487932 | 0.00846098534723939 | 0.0324063682221041 |
| E2F4#1874 | 3 | 12.6680603152844 | 0.000491798700629898 | 0.00436092413780659 |
| E2F6#1876 | 3 | 5.01715573169739 | 0.0079176980688633 | 0.032090828493248 |
| ELF1#1997 | 3 | 4.25809795880754 | 0.0129517987505461 | 0.0460578470396773 |
| ELK4#2005 | 3 | 16.235681658468 | 0.000233604395574599 | 0.00255176335837418 |
| GABPB1#2553 | 3 | 7.06768383618217 | 0.00283221282541742 | 0.0153714844501258 |
| GTF2B#2959 | 3 | 31.9438299343242 | 3.06634405746243e-05 | 0.000626336606722705 |
| HMGN3#9324 | 3 | 8.17854772335059 | 0.00182776694216421 | 0.0108435668980168 |
| MAX#4149 | 3 | 6.45255550900712 | 0.00372191383426551 | 0.0185995961020554 |
| MXI1#4601 | 3 | 9.9615716287593 | 0.00101147054125902 | 0.00718765543026135 |
| MYC#4609 | 3 | 5.2222818716094 | 0.00702084375574015 | 0.0293487792589556 |
| NFKB1#4790 | 3 | 5.48806342419384 | 0.00604938181565543 | 0.0268858839714557 |
| NR3C1#2908 | 3 | 14.973023331173 | 0.000297833119467548 | 0.00308187785237999 |
| PAX5#5079 | 3 | 6.66956553117783 | 0.00337029099967726 | 0.0172467941454894 |
| POU2F2#5452 | 3 | 9.10612405774252 | 0.00132416519268213 | 0.0088029591698618 |
| RAD21#5885 | 3 | 10.3550338954563 | 0.000900491207356542 | 0.00662298600035985 |
| REST#5978 | 3 | 9.65002871612802 | 0.00111263624711459 | 0.00765800823859237 |
| SIN3A#25942 | 3 | 5.40888472681514 | 0.00631896197799152 | 0.0275735802632012 |
| SMC3#9126 | 3 | 15.0449328449328 | 0.000293582542037187 | 0.00308279379728753 |
| TAF7#6879 | 3 | 11.4330694049239 | 0.000669018198194583 | 0.00541136861843588 |
| USF1#7391 | 3 | 6.36149927720796 | 0.0038840405729056 | 0.018968684283081 |
| USF2#7392 | 3 | 12.9921973850696 | 0.000455897939342781 | 0.0042072567718495 |
| YY1#7528 | 3 | 4.91117074985386 | 0.00844145534180826 | 0.0328300124541265 |
| ZNF263#10127 | 3 | 8.22184163701068 | 0.00179904392556587 | 0.0109010413403443 |
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data
This analysis result is provided for C0 - C305 clusters.
