FFCP PHASE1:Mm9::chr5:130732674..130732679,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=441|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:130732674..130732679,-|id=chr5:130732674..130732679,-|ontology_enrichment_celltype=CL:0000063!7.47e-15!66;CL:0000988!4.58e-13!32;CL:0002032!4.58e-13!32;CL:0000037!4.58e-13!32;CL:0000566!4.58e-13!32;CL:0000837!4.58e-13!32;CL:0000144!6.52e-12!121;CL:0000012!6.52e-12!121;CL:0002371!2.52e-10!118;CL:0000034!3.86e-10!97;CL:0002563!4.36e-10!9;CL:0002251!4.36e-10!9;CL:0000548!1.85e-09!115;CL:0000004!1.85e-09!115;CL:0000255!1.85e-09!115;CL:0002320!2.57e-09!46;CL:0000134!2.57e-09!46;CL:0002031!3.75e-09!25;CL:0000838!2.96e-08!12;CL:0000723!1.16e-07!91;CL:0000048!1.16e-07!91;CL:0000084!1.99e-07!11;CL:0000827!1.99e-07!11;CL:0000542!2.38e-07!13;CL:0000051!2.38e-07!13;CL:0000219!2.93e-07!54;CL:0000239!3.52e-07!6;CL:0000677!3.52e-07!6;CL:0000212!3.52e-07!6;CL:0000584!3.52e-07!6;CL:0000738!3.91e-07!17;CL:0002087!3.91e-07!17;CL:0000049!4.67e-07!19|ontology_enrichment_celltype_v019_2=CL:0002563,4.03e-27,9;CL:0002251,4.03e-27,9;CL:0000239,2.09e-18,6;CL:0000677,2.09e-18,6;CL:0000584,2.09e-18,6;CL:0000075,1.09e-15,7;CL:0002076,1.23e-15,15;CL:0000223,4.26e-14,20;CL:0000066,3.56e-13,25;CL:0000988,4.10e-13,32;CL:0002032,4.10e-13,32;CL:0000037,4.10e-13,32;CL:0000837,4.10e-13,32;CL:0002250,2.80e-10,3;CL:0002320,6.54e-10,46;CL:0000134,6.54e-10,46;CL:0000034,2.11e-09,97;CL:0000049,5.22e-09,19;CL:0000723,4.33e-08,91;CL:0000048,4.33e-08,91;CL:0000219,4.99e-08,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0050686,1.04e-08,6|ontology_enrichment_uberon=UBERON:0001242!2.53e-10!13;UBERON:0000060!2.53e-10!13;UBERON:0001262!2.53e-10!13;UBERON:0004786!2.53e-10!13;UBERON:0003350!4.36e-10!9;UBERON:0004808!4.36e-10!9;UBERON:0001277!4.36e-10!9;UBERON:0002384!2.57e-09!46;UBERON:0000485!5.70e-09!11;UBERON:0000344!2.28e-08!15;UBERON:0003929!6.11e-08!55;UBERON:0000490!1.49e-07!66;UBERON:0002390!3.60e-07!45;UBERON:0003061!3.60e-07!45|ontology_enrichment_uberon_v019_2=UBERON:0003350,4.03e-27,9;UBERON:0004808,4.03e-27,9;UBERON:0001277,4.03e-27,9;UBERON:0000485,6.65e-22,11;UBERON:0001242,2.74e-18,13;UBERON:0001262,2.74e-18,13;UBERON:0004786,2.74e-18,13;UBERON:0000344,1.23e-15,15;UBERON:0002384,6.54e-10,46;UBERON:0004923,3.57e-09,24;UBERON:0000160,9.49e-07,31|phase1_expression=0.160148847104794,6.63053274514786,4.54999239389536,11.1911758183527,6.51164448930251,1.17515490338323,1.40167584357315,1.03298658753261,0.84473233291,0.936258105287974,0,0.0797721589953364,2.22560948910567,1.57356724354195,0.666219523631325,0.202475267389826,0,0.157731082679119,0.137114433605739,0,0,0.397163804803541,0.522399578277871,0,0,1.72269589234506,0,0.430942465371778,0,0.504060259519861,0.221730510655305,6.98533740805594,6.1506478758457,0,5.77703239502549,1.82858109894342,10.0042984568561,0,2.3440060335714,2.09409497589519,2.35292595212406,2.73218193983378,0.485510353031154,0.125896817975577,0,0,0,0,0,0,0,0,1.67782606057736,2.17608642603403,0.672187598284928,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0,0.135005938331691,0,0,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0.226714680320357,5.50742528533188,0.860423876981386,0,0,0,0.448026887097336,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0.220841518460394,0,0,0,0,0,1.43778149407104,1.19980546198682,1.39777249780371,0,0,0,0,0,0,0,0,0.124406970610093,0.252722758433675,0,0,0,0.360124259610698,0.30140963567143,0,0,0,0,0,0,0,0,0,0,0,0,2.80885274925294,4.88961023517959,0.568326998791185,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0.330418782983798,0.528901133327089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398282546508734,0.189667900953082,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0.123397163921801,0.296452627087149,0.333690211432188,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0.144649058581512,1.50791283939272,0,0,0,0,0,0,0,0.315508219416257,0.390438744296638,0.215423397732799,0.716906393857656,0,0,0.404810701674894,0,0.395287777946524,0,0,0,0.162886959353576,0,0,0.242780636154981,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0.36012218806262,0.258717367565509,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0.185194527369712,0.376736914009382,0,0.228778173206523,1.01987057996313,2.09927178485487,0.414599921413271,0,0.316335993581135,0,0.108005340821801,0,0,0,0,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0,0.316011120628178,0,0.102710957164827,0.129920822977795,0.358053391334963,0.198681354781265,0,0.295379054349154,0.504832249740738,0.15241361331,0.100826185136841,0.0974578807397524,0.192423683280659,0.233753804363138,0,0.221985953374065,0.269141569828427,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412085900803307,0.147198920134397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr5:130732674..130732679,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=441 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:130732674..130732679,- | |||
|id=chr5:130732674..130732679,- | |||
|ontology_enrichment_celltype=CL:0000063!7.47e-15!66;CL:0000988!4.58e-13!32;CL:0002032!4.58e-13!32;CL:0000037!4.58e-13!32;CL:0000566!4.58e-13!32;CL:0000837!4.58e-13!32;CL:0000144!6.52e-12!121;CL:0000012!6.52e-12!121;CL:0002371!2.52e-10!118;CL:0000034!3.86e-10!97;CL:0002563!4.36e-10!9;CL:0002251!4.36e-10!9;CL:0000548!1.85e-09!115;CL:0000004!1.85e-09!115;CL:0000255!1.85e-09!115;CL:0002320!2.57e-09!46;CL:0000134!2.57e-09!46;CL:0002031!3.75e-09!25;CL:0000838!2.96e-08!12;CL:0000723!1.16e-07!91;CL:0000048!1.16e-07!91;CL:0000084!1.99e-07!11;CL:0000827!1.99e-07!11;CL:0000542!2.38e-07!13;CL:0000051!2.38e-07!13;CL:0000219!2.93e-07!54;CL:0000239!3.52e-07!6;CL:0000677!3.52e-07!6;CL:0000212!3.52e-07!6;CL:0000584!3.52e-07!6;CL:0000738!3.91e-07!17;CL:0002087!3.91e-07!17;CL:0000049!4.67e-07!19 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,4.03e-27,9;CL:0002251,4.03e-27,9;CL:0000239,2.09e-18,6;CL:0000677,2.09e-18,6;CL:0000584,2.09e-18,6;CL:0000075,1.09e-15,7;CL:0002076,1.23e-15,15;CL:0000223,4.26e-14,20;CL:0000066,3.56e-13,25;CL:0000988,4.10e-13,32;CL:0002032,4.10e-13,32;CL:0000037,4.10e-13,32;CL:0000837,4.10e-13,32;CL:0002250,2.80e-10,3;CL:0002320,6.54e-10,46;CL:0000134,6.54e-10,46;CL:0000034,2.11e-09,97;CL:0000049,5.22e-09,19;CL:0000723,4.33e-08,91;CL:0000048,4.33e-08,91;CL:0000219,4.99e-08,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0050686,1.04e-08,6 | |||
|ontology_enrichment_uberon=UBERON:0001242!2.53e-10!13;UBERON:0000060!2.53e-10!13;UBERON:0001262!2.53e-10!13;UBERON:0004786!2.53e-10!13;UBERON:0003350!4.36e-10!9;UBERON:0004808!4.36e-10!9;UBERON:0001277!4.36e-10!9;UBERON:0002384!2.57e-09!46;UBERON:0000485!5.70e-09!11;UBERON:0000344!2.28e-08!15;UBERON:0003929!6.11e-08!55;UBERON:0000490!1.49e-07!66;UBERON:0002390!3.60e-07!45;UBERON:0003061!3.60e-07!45 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,4.03e-27,9;UBERON:0004808,4.03e-27,9;UBERON:0001277,4.03e-27,9;UBERON:0000485,6.65e-22,11;UBERON:0001242,2.74e-18,13;UBERON:0001262,2.74e-18,13;UBERON:0004786,2.74e-18,13;UBERON:0000344,1.23e-15,15;UBERON:0002384,6.54e-10,46;UBERON:0004923,3.57e-09,24;UBERON:0000160,9.49e-07,31 | |||
|phase1_expression=0.160148847104794,6.63053274514786,4.54999239389536,11.1911758183527,6.51164448930251,1.17515490338323,1.40167584357315,1.03298658753261,0.84473233291,0.936258105287974,0,0.0797721589953364,2.22560948910567,1.57356724354195,0.666219523631325,0.202475267389826,0,0.157731082679119,0.137114433605739,0,0,0.397163804803541,0.522399578277871,0,0,1.72269589234506,0,0.430942465371778,0,0.504060259519861,0.221730510655305,6.98533740805594,6.1506478758457,0,5.77703239502549,1.82858109894342,10.0042984568561,0,2.3440060335714,2.09409497589519,2.35292595212406,2.73218193983378,0.485510353031154,0.125896817975577,0,0,0,0,0,0,0,0,1.67782606057736,2.17608642603403,0.672187598284928,0,0,0,0,0,0,0,0,0,0,0,0.299600110518405,0,0,0.135005938331691,0,0,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0.142371680799103,0,0,0.226714680320357,5.50742528533188,0.860423876981386,0,0,0,0.448026887097336,0.140444420131752,0,0,0,0,0,0,0,0.216491041011214,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161766849947409,0.220841518460394,0,0,0,0,0,1.43778149407104,1.19980546198682,1.39777249780371,0,0,0,0,0,0,0,0,0.124406970610093,0.252722758433675,0,0,0,0.360124259610698,0.30140963567143,0,0,0,0,0,0,0,0,0,0,0,0,2.80885274925294,4.88961023517959,0.568326998791185,0,0,0.180062061461015,0,0,0,0,0,0,0,0,0.0810688095458557,0,0,0,0,0,0.330418782983798,0.528901133327089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398282546508734,0.189667900953082,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0.123397163921801,0.296452627087149,0.333690211432188,0,0,0.202860121388503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0.144649058581512,1.50791283939272,0,0,0,0,0,0,0,0.315508219416257,0.390438744296638,0.215423397732799,0.716906393857656,0,0,0.404810701674894,0,0.395287777946524,0,0,0,0.162886959353576,0,0,0.242780636154981,0,0,0,0,0,0.363533729477506,0,0,0,0,0,0.36012218806262,0.258717367565509,0,0,0,0,0,0,0,0,0,0,0.0603129249281559,0,0,0,0,0,0,0.185194527369712,0.376736914009382,0,0.228778173206523,1.01987057996313,2.09927178485487,0.414599921413271,0,0.316335993581135,0,0.108005340821801,0,0,0,0,0.26175594198403,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0,0.316011120628178,0,0.102710957164827,0.129920822977795,0.358053391334963,0.198681354781265,0,0.295379054349154,0.504832249740738,0.15241361331,0.100826185136841,0.0974578807397524,0.192423683280659,0.233753804363138,0,0.221985953374065,0.269141569828427,0.167884616364078,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412085900803307,0.147198920134397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr5:130732674..130732679,- | |||
}} |
Revision as of 06:33, 14 September 2013
Short description: | p@chr5:130732674..130732679, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:130732674..130732679, - |
Coexpression cluster: | MCL_coexpression_mm9:441 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 4.03e-27 | 9 |
epithelial cell of alimentary canal | 4.03e-27 | 9 |
brush border epithelial cell | 2.09e-18 | 6 |
gut absorptive cell | 2.09e-18 | 6 |
enterocyte | 2.09e-18 | 6 |
columnar/cuboidal epithelial cell | 1.09e-15 | 7 |
endo-epithelial cell | 1.23e-15 | 15 |
endodermal cell | 4.26e-14 | 20 |
epithelial cell | 3.56e-13 | 25 |
hematopoietic cell | 4.10e-13 | 32 |
hematopoietic oligopotent progenitor cell | 4.10e-13 | 32 |
hematopoietic stem cell | 4.10e-13 | 32 |
hematopoietic multipotent progenitor cell | 4.10e-13 | 32 |
intestinal crypt stem cell | 2.80e-10 | 3 |
connective tissue cell | 6.54e-10 | 46 |
mesenchymal cell | 6.54e-10 | 46 |
stem cell | 2.11e-09 | 97 |
common myeloid progenitor | 5.22e-09 | 19 |
somatic stem cell | 4.33e-08 | 91 |
multi fate stem cell | 4.33e-08 | 91 |
motile cell | 4.99e-08 | 54 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 4.03e-27 | 9 |
gastrointestinal system epithelium | 4.03e-27 | 9 |
intestinal epithelium | 4.03e-27 | 9 |
simple columnar epithelium | 6.65e-22 | 11 |
intestinal mucosa | 2.74e-18 | 13 |
wall of intestine | 2.74e-18 | 13 |
gastrointestinal system mucosa | 2.74e-18 | 13 |
mucosa | 1.23e-15 | 15 |
connective tissue | 6.54e-10 | 46 |
organ component layer | 3.57e-09 | 24 |
intestine | 9.49e-07 | 31 |
Ontology term | p-value | n |
---|---|---|
organ system cancer | 1.04e-08 | 6 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.