FFCP PHASE1:Mm9::chr16:87440743..87440787,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=53858|HGNC=|MCL_coexpression_id=12|UniProt=Q99M03|association_with_transcript=30bp_to_ENSMUST00000039101,ENSMUST00000152430_5end|description=CAGE_peak_2_at_Rwdd2b_5end|id=chr16:87440743..87440787,-|ontology_enrichment_celltype=CL:0002563!7.53e-07!9;CL:0002251!7.53e-07!9|ontology_enrichment_celltype_v019_2=CL:0002563,3.48e-10,9;CL:0002251,3.48e-10,9;CL:0000066,4.93e-08,25;CL:0000239,1.51e-07,6;CL:0000677,1.51e-07,6;CL:0000584,1.51e-07,6;CL:0000223,9.98e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.81e-11!43;UBERON:0000344!1.15e-10!15;UBERON:0001242!1.78e-09!13;UBERON:0000060!1.78e-09!13;UBERON:0001262!1.78e-09!13;UBERON:0004786!1.78e-09!13;UBERON:0005409!9.57e-08!59;UBERON:0003350!7.53e-07!9;UBERON:0004808!7.53e-07!9;UBERON:0001277!7.53e-07!9|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.84e-26,31;UBERON:0000344,2.18e-16,15;UBERON:0005409,6.63e-16,47;UBERON:0001242,1.90e-14,13;UBERON:0001262,1.90e-14,13;UBERON:0004786,1.90e-14,13;UBERON:0003350,3.48e-10,9;UBERON:0004808,3.48e-10,9;UBERON:0001277,3.48e-10,9;UBERON:0004923,2.68e-09,24;UBERON:0001007,4.08e-08,116;UBERON:0001555,4.08e-08,116;UBERON:0007026,4.08e-08,116;UBERON:0000485,8.49e-08,11;UBERON:0004119,9.62e-08,118;UBERON:0000925,9.62e-08,118;UBERON:0006595,9.62e-08,118;UBERON:0004921,3.90e-07,114|phase1_expression=0.640595388419176,34.5485653562967,27.7549536027617,57.1657359369909,39.5707626657614,4.53274034162102,4.90586545250604,0.774739940649458,0.563154888606667,0.468129052643987,0.34243593645101,0.638177271962691,0.684802919724823,0.699363219351979,0.333109761815663,0,0,0.315462165358238,0.548457734422955,0.42438965179803,1.19060606211498,0.794327609607082,0.522399578277871,12.7993938234725,10.5528269290898,30.4342940980961,24.5534337810673,12.7128027284675,34.2042155021473,36.7963989449499,10.4213340007993,0.635030673459631,0,0,8.66554859253824,7.97926297720763,7.75843553797003,0.418531630736908,3.1253413780952,1.0470474879476,0.588231488031014,0.683045484958446,0.485510353031154,0.503587271902309,0.202753862439029,0.183546752161682,0,0,0.219686182734472,0.58328969722285,0.279972843250725,0,0.335565212115473,1.45072428402269,0.336093799142464,0.257259436035947,0.573066879877513,0,1.41621522601718,1.05798195854407,0.633831403506179,0,0,0,0,0.7104801149461,0.299600110518405,0.384218305321555,0,0.405017814995072,0.630974884054146,1.71390590642282,0.220868540951614,0.857435594504678,1.0543001812006,0.919218786610021,0,0.383062014255563,1.38245879930619,0.527545150920775,0.548925861614458,0,0.837548997004143,0.56276261003168,1.5279824777681,0.589257170947335,1.13897344639282,0.931997229126503,0.151452386666368,0.226714680320357,2.02905142091174,0,0.679971333707751,1.07940638327563,4.54843492213368,4.03224198387602,2.24711072210803,0.511290967734173,0.259786004602869,0.35333957451034,0.422530259330042,0,0,0,0.432982082022428,0,0.505524445014783,7.87868770061514,0.258937883647172,0,0,0.304465478312141,0.461230994512117,0.150722640552623,0.352766121407114,0,1.73036477414062,0.144599356919912,0,0.161766849947409,0.441683036920787,1.45462575940567,1.86391761218122,0.292780797011547,1.04723353406728,27.3339049073193,0.718890747035522,0.599902730993408,1.01656181658452,0.748953197024114,0.457500602818626,0.502617408451458,1.04294592115366,1.53429274398198,0.62336413367868,0.973447578406546,0.712875546952214,0.622034853050465,0.252722758433675,0.631325567659422,1.04096354370163,0.919608417733892,1.0803727788321,0.452114453507145,0.612328492361951,0.512454881139399,0.374806898238915,0,0.215567992932842,0.756424320671277,0.879755620819744,0.219195732427575,0.834141747676794,0.348252166522167,0.411564272815887,0.995171334092466,0,0.51469581422943,0.568326998791185,0.828503090142008,0.938104239924385,0.180062061461015,0.473489471170421,0.590292695242212,0.617068451549513,0.465067889500816,1.07309360559848,0.233530684734339,0.16455984991348,0.492502392237286,0.486412857275134,0.292399974850665,0.219550115291051,0.268412837520744,0.841159794256509,0.308713837137853,41.9631854389423,15.8670339998127,0.426576501070468,0.696710015581316,1.15980715189884,3.42861991859682,2.89091456998331,4.56541502670142,21.8283368310475,8.56434564564857,8.29406189040889,6.16765063327568,8.96834800747953,30.5598598942435,20.533114738096,21.1089749649629,0.758671603812327,0.228497025219458,2.25415471346161,1.62921062276251,0.969762435838129,1.40271639780637,2.08680572510049,4.13308414342886,3.767969468193,3.45512058981041,3.55743152504579,0.500535317148282,0.393117990226406,0.674586337154561,0,0,0.25462585178142,0.863088412352432,0.162135226775035,0,1.43768206527355,1.86070473834252,2.18426371180192,3.53610429125956,3.76734568396016,1.92977408545347,0.184753190166605,0.568474235311454,0.325929952884052,0.169745085775188,0.469380496577004,0.167506257441816,0.476087281772027,0.390267295715598,0.157635144106191,0.44292937929755,0.318909537314974,0.491589944147214,0.345369963731791,0.578596234326046,0,0,0,0,1.9266070798535,0.586058432961016,0.327869890753351,0,0.631016438832513,0,0.646270193198397,0.477937595905104,0.222798674082394,0.283076530788832,1.61924280669958,0.584511715822624,0.395287777946524,1.60660658210904,0.141940085208269,0,0.162886959353576,0.329940245945071,1.32745138339963,1.45668381692989,0.906970670894253,0.377210159511796,0,0.614870295887855,3.35956781118687,0.363533729477506,0,0,0,0,0.680879211507576,0.36012218806262,0.646793418913773,1.50035924522115,0.354680467284547,1.96205699362278,0.658196082408484,0,0.469343416127421,0.847328283455281,0.441056796109924,0.32977250588296,0,0.120625849856312,0.716234064018819,0.164140899745061,17.1973693611612,1.48340241608408,0.170870880797853,0.412773735926445,0,0,0.27338845544205,0.686334519619568,1.01987057996313,0.69975726161829,0.414599921413271,0,0.632671987162271,0.609958401380546,0.432021363287205,0.836353184057875,1.74690050996942,0.674321731924103,0.41326727862668,0.523511883968059,3.75883422546199,0.621339313086926,0,0,0.165458490457098,0,0.516639293910924,1.01373675294467,0.469428954583016,0.781226309063701,0.314578033277133,0.724752362478018,0.288030006257865,1.89606672376907,0.202725215290164,0.718976700153791,0.25984164595559,1.61124026100733,0.596044064343795,0.600977247599844,0.886137163047463,0.302899349844443,1.295515713135,1.00826185136841,0.974578807397524,0.481059208201647,0.584384510907845,0,0,0.179427713218951,0.167884616364078,0.772758376128762,0.187682475451182,0.36630324853453,0.428736758158132,0.501572104035363,1.12950368523413,0.460325236507177,1.14579102687879,0.68741272937475,0,1.5107877947794,0.675022500231806,0,0.906284817968409,1.03552062350364,1.14166082342594,0.399024873401031,1.02440163452481,0,0.628839487883947,0.919217542250071,0.888986911206461,1.03017528619447,0.64183841918363,0.758091635291392,0.760437899670719,0.377252682772152,0.749132059759059,0.576226371643824,0.631790158511746,0.952587382566147,0.579421629724277,0.578727661391115,1.23625770240992,1.17759136107518,0.342869252385415,0.887379030796687,0.476872379894642,0.436039249896986,0.752875043322645,0.338458431566706,0,0.789209134313529,0.814824683075171,0.561142271657738,0.474540072496697,1.37906275325789,1.22769312950907,0.464810523557898,1.15743966588685,0.249810577937946,0.701794825336225,1.28922632428979,0.57386499620653,0.441182838239031,0.463735671240843|short_description=p2@Rwdd2b}} | ||
|EntrezGene=53858 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q99M03 | |||
|association_with_transcript=30bp_to_ENSMUST00000039101,ENSMUST00000152430_5end | |||
|description=CAGE_peak_2_at_Rwdd2b_5end | |||
|id=chr16:87440743..87440787,- | |||
|ontology_enrichment_celltype=CL:0002563!7.53e-07!9;CL:0002251!7.53e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.48e-10,9;CL:0002251,3.48e-10,9;CL:0000066,4.93e-08,25;CL:0000239,1.51e-07,6;CL:0000677,1.51e-07,6;CL:0000584,1.51e-07,6;CL:0000223,9.98e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.81e-11!43;UBERON:0000344!1.15e-10!15;UBERON:0001242!1.78e-09!13;UBERON:0000060!1.78e-09!13;UBERON:0001262!1.78e-09!13;UBERON:0004786!1.78e-09!13;UBERON:0005409!9.57e-08!59;UBERON:0003350!7.53e-07!9;UBERON:0004808!7.53e-07!9;UBERON:0001277!7.53e-07!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,2.84e-26,31;UBERON:0000344,2.18e-16,15;UBERON:0005409,6.63e-16,47;UBERON:0001242,1.90e-14,13;UBERON:0001262,1.90e-14,13;UBERON:0004786,1.90e-14,13;UBERON:0003350,3.48e-10,9;UBERON:0004808,3.48e-10,9;UBERON:0001277,3.48e-10,9;UBERON:0004923,2.68e-09,24;UBERON:0001007,4.08e-08,116;UBERON:0001555,4.08e-08,116;UBERON:0007026,4.08e-08,116;UBERON:0000485,8.49e-08,11;UBERON:0004119,9.62e-08,118;UBERON:0000925,9.62e-08,118;UBERON:0006595,9.62e-08,118;UBERON:0004921,3.90e-07,114 | |||
|phase1_expression=0.640595388419176,34.5485653562967,27.7549536027617,57.1657359369909,39.5707626657614,4.53274034162102,4.90586545250604,0.774739940649458,0.563154888606667,0.468129052643987,0.34243593645101,0.638177271962691,0.684802919724823,0.699363219351979,0.333109761815663,0,0,0.315462165358238,0.548457734422955,0.42438965179803,1.19060606211498,0.794327609607082,0.522399578277871,12.7993938234725,10.5528269290898,30.4342940980961,24.5534337810673,12.7128027284675,34.2042155021473,36.7963989449499,10.4213340007993,0.635030673459631,0,0,8.66554859253824,7.97926297720763,7.75843553797003,0.418531630736908,3.1253413780952,1.0470474879476,0.588231488031014,0.683045484958446,0.485510353031154,0.503587271902309,0.202753862439029,0.183546752161682,0,0,0.219686182734472,0.58328969722285,0.279972843250725,0,0.335565212115473,1.45072428402269,0.336093799142464,0.257259436035947,0.573066879877513,0,1.41621522601718,1.05798195854407,0.633831403506179,0,0,0,0,0.7104801149461,0.299600110518405,0.384218305321555,0,0.405017814995072,0.630974884054146,1.71390590642282,0.220868540951614,0.857435594504678,1.0543001812006,0.919218786610021,0,0.383062014255563,1.38245879930619,0.527545150920775,0.548925861614458,0,0.837548997004143,0.56276261003168,1.5279824777681,0.589257170947335,1.13897344639282,0.931997229126503,0.151452386666368,0.226714680320357,2.02905142091174,0,0.679971333707751,1.07940638327563,4.54843492213368,4.03224198387602,2.24711072210803,0.511290967734173,0.259786004602869,0.35333957451034,0.422530259330042,0,0,0,0.432982082022428,0,0.505524445014783,7.87868770061514,0.258937883647172,0,0,0.304465478312141,0.461230994512117,0.150722640552623,0.352766121407114,0,1.73036477414062,0.144599356919912,0,0.161766849947409,0.441683036920787,1.45462575940567,1.86391761218122,0.292780797011547,1.04723353406728,27.3339049073193,0.718890747035522,0.599902730993408,1.01656181658452,0.748953197024114,0.457500602818626,0.502617408451458,1.04294592115366,1.53429274398198,0.62336413367868,0.973447578406546,0.712875546952214,0.622034853050465,0.252722758433675,0.631325567659422,1.04096354370163,0.919608417733892,1.0803727788321,0.452114453507145,0.612328492361951,0.512454881139399,0.374806898238915,0,0.215567992932842,0.756424320671277,0.879755620819744,0.219195732427575,0.834141747676794,0.348252166522167,0.411564272815887,0.995171334092466,0,0.51469581422943,0.568326998791185,0.828503090142008,0.938104239924385,0.180062061461015,0.473489471170421,0.590292695242212,0.617068451549513,0.465067889500816,1.07309360559848,0.233530684734339,0.16455984991348,0.492502392237286,0.486412857275134,0.292399974850665,0.219550115291051,0.268412837520744,0.841159794256509,0.308713837137853,41.9631854389423,15.8670339998127,0.426576501070468,0.696710015581316,1.15980715189884,3.42861991859682,2.89091456998331,4.56541502670142,21.8283368310475,8.56434564564857,8.29406189040889,6.16765063327568,8.96834800747953,30.5598598942435,20.533114738096,21.1089749649629,0.758671603812327,0.228497025219458,2.25415471346161,1.62921062276251,0.969762435838129,1.40271639780637,2.08680572510049,4.13308414342886,3.767969468193,3.45512058981041,3.55743152504579,0.500535317148282,0.393117990226406,0.674586337154561,0,0,0.25462585178142,0.863088412352432,0.162135226775035,0,1.43768206527355,1.86070473834252,2.18426371180192,3.53610429125956,3.76734568396016,1.92977408545347,0.184753190166605,0.568474235311454,0.325929952884052,0.169745085775188,0.469380496577004,0.167506257441816,0.476087281772027,0.390267295715598,0.157635144106191,0.44292937929755,0.318909537314974,0.491589944147214,0.345369963731791,0.578596234326046,0,0,0,0,1.9266070798535,0.586058432961016,0.327869890753351,0,0.631016438832513,0,0.646270193198397,0.477937595905104,0.222798674082394,0.283076530788832,1.61924280669958,0.584511715822624,0.395287777946524,1.60660658210904,0.141940085208269,0,0.162886959353576,0.329940245945071,1.32745138339963,1.45668381692989,0.906970670894253,0.377210159511796,0,0.614870295887855,3.35956781118687,0.363533729477506,0,0,0,0,0.680879211507576,0.36012218806262,0.646793418913773,1.50035924522115,0.354680467284547,1.96205699362278,0.658196082408484,0,0.469343416127421,0.847328283455281,0.441056796109924,0.32977250588296,0,0.120625849856312,0.716234064018819,0.164140899745061,17.1973693611612,1.48340241608408,0.170870880797853,0.412773735926445,0,0,0.27338845544205,0.686334519619568,1.01987057996313,0.69975726161829,0.414599921413271,0,0.632671987162271,0.609958401380546,0.432021363287205,0.836353184057875,1.74690050996942,0.674321731924103,0.41326727862668,0.523511883968059,3.75883422546199,0.621339313086926,0,0,0.165458490457098,0,0.516639293910924,1.01373675294467,0.469428954583016,0.781226309063701,0.314578033277133,0.724752362478018,0.288030006257865,1.89606672376907,0.202725215290164,0.718976700153791,0.25984164595559,1.61124026100733,0.596044064343795,0.600977247599844,0.886137163047463,0.302899349844443,1.295515713135,1.00826185136841,0.974578807397524,0.481059208201647,0.584384510907845,0,0,0.179427713218951,0.167884616364078,0.772758376128762,0.187682475451182,0.36630324853453,0.428736758158132,0.501572104035363,1.12950368523413,0.460325236507177,1.14579102687879,0.68741272937475,0,1.5107877947794,0.675022500231806,0,0.906284817968409,1.03552062350364,1.14166082342594,0.399024873401031,1.02440163452481,0,0.628839487883947,0.919217542250071,0.888986911206461,1.03017528619447,0.64183841918363,0.758091635291392,0.760437899670719,0.377252682772152,0.749132059759059,0.576226371643824,0.631790158511746,0.952587382566147,0.579421629724277,0.578727661391115,1.23625770240992,1.17759136107518,0.342869252385415,0.887379030796687,0.476872379894642,0.436039249896986,0.752875043322645,0.338458431566706,0,0.789209134313529,0.814824683075171,0.561142271657738,0.474540072496697,1.37906275325789,1.22769312950907,0.464810523557898,1.15743966588685,0.249810577937946,0.701794825336225,1.28922632428979,0.57386499620653,0.441182838239031,0.463735671240843 | |||
|short_description=p2@Rwdd2b | |||
}} | |||
Revision as of 13:12, 13 September 2013
| Short description: | p2@Rwdd2b |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_2_at_Rwdd2b_5end |
| Coexpression cluster: | MCL_coexpression_mm9:12 |
| Association with transcript: | 30bp_to_ENSMUST00000039101, ENSMUST00000152430_5end |
| EntrezGene: | Rwdd2b |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| intestinal epithelial cell | 3.48e-10 | 9 |
| epithelial cell of alimentary canal | 3.48e-10 | 9 |
| epithelial cell | 4.93e-08 | 25 |
| brush border epithelial cell | 1.51e-07 | 6 |
| gut absorptive cell | 1.51e-07 | 6 |
| enterocyte | 1.51e-07 | 6 |
| endodermal cell | 9.98e-07 | 20 |
| Ontology term | p-value | n |
|---|---|---|
| intestine | 2.84e-26 | 31 |
| mucosa | 2.18e-16 | 15 |
| gastrointestinal system | 6.63e-16 | 47 |
| intestinal mucosa | 1.90e-14 | 13 |
| wall of intestine | 1.90e-14 | 13 |
| gastrointestinal system mucosa | 1.90e-14 | 13 |
| epithelium of mucosa | 3.48e-10 | 9 |
| gastrointestinal system epithelium | 3.48e-10 | 9 |
| intestinal epithelium | 3.48e-10 | 9 |
| organ component layer | 2.68e-09 | 24 |
| digestive system | 4.08e-08 | 116 |
| digestive tract | 4.08e-08 | 116 |
| primitive gut | 4.08e-08 | 116 |
| simple columnar epithelium | 8.49e-08 | 11 |
| endoderm-derived structure | 9.62e-08 | 118 |
| endoderm | 9.62e-08 | 118 |
| presumptive endoderm | 9.62e-08 | 118 |
| subdivision of digestive tract | 3.90e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
