FFCP PHASE1:Mm9::chr8:73280352..73280372,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19339|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=0bp_to_ENSMUST00000130468_5end|description=CAGE_peak_2_at_Rab3a_5end|id=chr8:73280352..73280372,+|ontology_enrichment_celltype=CL:0000117!4.62e-17!23;CL:0000337!4.62e-17!23;CL:0000540!1.82e-14!33;CL:0000047!1.82e-14!33;CL:0000031!1.82e-14!33;CL:0000404!1.82e-14!33;CL:0000393!1.01e-12!39;CL:0000211!1.01e-12!39;CL:0002319!2.19e-11!43;CL:0000221!7.68e-11!44;CL:0000133!7.68e-11!44;CL:0000055!6.62e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,1.63e-28,23;CL:0000337,1.63e-28,23;CL:0000540,2.92e-18,33;CL:0000047,2.92e-18,33;CL:0000031,2.92e-18,33;CL:0000404,2.92e-18,33;CL:0000393,1.19e-14,39;CL:0000211,1.19e-14,39;CL:0002319,3.12e-14,43;CL:0000221,8.70e-14,44;CL:0000133,8.70e-14,44;CL:0002610,5.61e-07,3;CL:0002614,7.68e-07,3;CL:0002321,8.88e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!3.81e-31!71;UBERON:0003075!3.81e-31!71;UBERON:0007284!3.81e-31!71;UBERON:0001017!7.21e-31!73;UBERON:0005743!7.21e-31!73;UBERON:0001049!1.72e-30!52;UBERON:0005068!1.72e-30!52;UBERON:0006241!1.72e-30!52;UBERON:0007135!1.72e-30!52;UBERON:0000073!4.46e-30!75;UBERON:0001016!4.46e-30!75;UBERON:0000955!7.17e-29!50;UBERON:0006238!7.17e-29!50;UBERON:0002616!4.18e-28!49;UBERON:0004121!2.29e-25!102;UBERON:0000924!2.29e-25!102;UBERON:0006601!2.29e-25!102;UBERON:0002020!2.58e-25!34;UBERON:0000033!3.38e-25!63;UBERON:0003080!2.17e-23!40;UBERON:0002780!1.46e-22!39;UBERON:0001890!1.46e-22!39;UBERON:0006240!1.46e-22!39;UBERON:0003056!5.20e-22!49;UBERON:0002791!2.45e-21!29;UBERON:0003528!2.45e-21!29;UBERON:0001893!2.45e-21!29;UBERON:0000956!1.07e-15!21;UBERON:0001869!1.07e-15!21;UBERON:0000203!1.07e-15!21;UBERON:0007811!2.96e-14!86;UBERON:0002619!2.85e-13!17;UBERON:0000153!7.67e-12!94;UBERON:0000025!1.74e-10!114;UBERON:0002021!6.21e-10!10;UBERON:0000411!6.21e-10!10;UBERON:0001950!6.21e-10!10;UBERON:0004111!2.43e-09!122;UBERON:0003076!1.83e-07!12;UBERON:0003057!1.83e-07!12;UBERON:0002420!8.60e-07!8;UBERON:0007245!8.60e-07!8;UBERON:0010009!8.60e-07!8;UBERON:0010011!8.60e-07!8;UBERON:0000454!8.60e-07!8|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.38e-47,54;UBERON:0001049,7.50e-44,52;UBERON:0005068,7.50e-44,52;UBERON:0006241,7.50e-44,52;UBERON:0007135,7.50e-44,52;UBERON:0001017,2.47e-43,73;UBERON:0002020,1.80e-42,34;UBERON:0001016,6.51e-42,75;UBERON:0002346,7.61e-36,64;UBERON:0003075,7.61e-36,64;UBERON:0007284,7.61e-36,64;UBERON:0000955,3.33e-35,47;UBERON:0006238,3.33e-35,47;UBERON:0003528,1.05e-33,29;UBERON:0002791,1.05e-33,29;UBERON:0001893,1.05e-33,29;UBERON:0002616,1.09e-33,46;UBERON:0004121,1.38e-32,95;UBERON:0000924,1.38e-32,95;UBERON:0006601,1.38e-32,95;UBERON:0010371,2.82e-30,73;UBERON:0003080,1.35e-29,40;UBERON:0002780,5.76e-28,39;UBERON:0001890,5.76e-28,39;UBERON:0006240,5.76e-28,39;UBERON:0003056,1.34e-24,49;UBERON:0000956,1.02e-23,21;UBERON:0001869,1.02e-23,21;UBERON:0000203,1.02e-23,21;UBERON:0010314,4.25e-22,92;UBERON:0002619,8.84e-21,17;UBERON:0002021,9.28e-21,10;UBERON:0000411,9.28e-21,10;UBERON:0001950,9.28e-21,10;UBERON:0000025,5.15e-15,114;UBERON:0003076,3.33e-14,12;UBERON:0003057,3.33e-14,12;UBERON:0004111,1.96e-13,122;UBERON:0002240,1.35e-11,6;UBERON:0005174,1.35e-11,6;UBERON:0001137,1.35e-11,6;UBERON:0002420,7.27e-11,8;UBERON:0007245,7.27e-11,8;UBERON:0010009,7.27e-11,8;UBERON:0010011,7.27e-11,8;UBERON:0000454,7.27e-11,8;UBERON:0011216,5.28e-10,194;UBERON:0001948,8.13e-10,5;UBERON:0002315,8.13e-10,5;UBERON:0002950,1.44e-08,4;UBERON:0001891,1.44e-08,4;UBERON:0009616,1.44e-08,4;UBERON:0010286,1.44e-08,4;UBERON:0000483,2.35e-07,174;UBERON:0000119,3.59e-07,176;UBERON:0004684,5.61e-07,3;UBERON:0002275,5.61e-07,3;UBERON:0002038,7.68e-07,3;UBERON:0009663,7.68e-07,3;UBERON:0009661,7.68e-07,3;UBERON:0000125,7.68e-07,3;UBERON:0002308,7.68e-07,3|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0.218025156380447,0.219686182734472,1.36100929351998,0,0,0,0,0,0,0,0.515672092277442,1.41621522601718,2.11596391708813,1.90149421051854,0,0,0,0,0,0,0,1.14058573539325,2.29510095163874,0.841299845405528,6.56997264128748,3.53389665522582,0.979926393719632,0.958454710182364,1.83843757322004,6.60695285996332,4.08599481872601,6.60508093001847,1.45074916503213,2.37867873366265,3.12548022334056,8.93385596804419,2.8138130501584,4.27835093775068,3.53554302568401,4.27115042397309,2.23679334990361,0,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.561777680527007,0.170430322578058,0,0,0,0,0,0,0,0,0.505524445014783,0,0,0.593768556259299,0.173485326766136,0.304465478312141,0.691846491768175,0.150722640552623,0,0.125666591329675,0,0,0,0.323533699894818,0,0,0,1.75668478206928,4.60782754989601,0,0,0,0,4.34392854273986,1.83000241127451,0.628271760564322,2.25971616249959,1.79000820131231,4.1557608911912,2.10913641988085,0,0,0.252722758433675,0.210441855886474,0,0,0.180062129805349,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| ||
|EntrezGene=19339 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000130468_5end | |||
|description=CAGE_peak_2_at_Rab3a_5end | |||
|id=chr8:73280352..73280372,+ | |||
|ontology_enrichment_celltype=CL:0000117!4.62e-17!23;CL:0000337!4.62e-17!23;CL:0000540!1.82e-14!33;CL:0000047!1.82e-14!33;CL:0000031!1.82e-14!33;CL:0000404!1.82e-14!33;CL:0000393!1.01e-12!39;CL:0000211!1.01e-12!39;CL:0002319!2.19e-11!43;CL:0000221!7.68e-11!44;CL:0000133!7.68e-11!44;CL:0000055!6.62e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.63e-28,23;CL:0000337,1.63e-28,23;CL:0000540,2.92e-18,33;CL:0000047,2.92e-18,33;CL:0000031,2.92e-18,33;CL:0000404,2.92e-18,33;CL:0000393,1.19e-14,39;CL:0000211,1.19e-14,39;CL:0002319,3.12e-14,43;CL:0000221,8.70e-14,44;CL:0000133,8.70e-14,44;CL:0002610,5.61e-07,3;CL:0002614,7.68e-07,3;CL:0002321,8.88e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!3.81e-31!71;UBERON:0003075!3.81e-31!71;UBERON:0007284!3.81e-31!71;UBERON:0001017!7.21e-31!73;UBERON:0005743!7.21e-31!73;UBERON:0001049!1.72e-30!52;UBERON:0005068!1.72e-30!52;UBERON:0006241!1.72e-30!52;UBERON:0007135!1.72e-30!52;UBERON:0000073!4.46e-30!75;UBERON:0001016!4.46e-30!75;UBERON:0000955!7.17e-29!50;UBERON:0006238!7.17e-29!50;UBERON:0002616!4.18e-28!49;UBERON:0004121!2.29e-25!102;UBERON:0000924!2.29e-25!102;UBERON:0006601!2.29e-25!102;UBERON:0002020!2.58e-25!34;UBERON:0000033!3.38e-25!63;UBERON:0003080!2.17e-23!40;UBERON:0002780!1.46e-22!39;UBERON:0001890!1.46e-22!39;UBERON:0006240!1.46e-22!39;UBERON:0003056!5.20e-22!49;UBERON:0002791!2.45e-21!29;UBERON:0003528!2.45e-21!29;UBERON:0001893!2.45e-21!29;UBERON:0000956!1.07e-15!21;UBERON:0001869!1.07e-15!21;UBERON:0000203!1.07e-15!21;UBERON:0007811!2.96e-14!86;UBERON:0002619!2.85e-13!17;UBERON:0000153!7.67e-12!94;UBERON:0000025!1.74e-10!114;UBERON:0002021!6.21e-10!10;UBERON:0000411!6.21e-10!10;UBERON:0001950!6.21e-10!10;UBERON:0004111!2.43e-09!122;UBERON:0003076!1.83e-07!12;UBERON:0003057!1.83e-07!12;UBERON:0002420!8.60e-07!8;UBERON:0007245!8.60e-07!8;UBERON:0010009!8.60e-07!8;UBERON:0010011!8.60e-07!8;UBERON:0000454!8.60e-07!8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.38e-47,54;UBERON:0001049,7.50e-44,52;UBERON:0005068,7.50e-44,52;UBERON:0006241,7.50e-44,52;UBERON:0007135,7.50e-44,52;UBERON:0001017,2.47e-43,73;UBERON:0002020,1.80e-42,34;UBERON:0001016,6.51e-42,75;UBERON:0002346,7.61e-36,64;UBERON:0003075,7.61e-36,64;UBERON:0007284,7.61e-36,64;UBERON:0000955,3.33e-35,47;UBERON:0006238,3.33e-35,47;UBERON:0003528,1.05e-33,29;UBERON:0002791,1.05e-33,29;UBERON:0001893,1.05e-33,29;UBERON:0002616,1.09e-33,46;UBERON:0004121,1.38e-32,95;UBERON:0000924,1.38e-32,95;UBERON:0006601,1.38e-32,95;UBERON:0010371,2.82e-30,73;UBERON:0003080,1.35e-29,40;UBERON:0002780,5.76e-28,39;UBERON:0001890,5.76e-28,39;UBERON:0006240,5.76e-28,39;UBERON:0003056,1.34e-24,49;UBERON:0000956,1.02e-23,21;UBERON:0001869,1.02e-23,21;UBERON:0000203,1.02e-23,21;UBERON:0010314,4.25e-22,92;UBERON:0002619,8.84e-21,17;UBERON:0002021,9.28e-21,10;UBERON:0000411,9.28e-21,10;UBERON:0001950,9.28e-21,10;UBERON:0000025,5.15e-15,114;UBERON:0003076,3.33e-14,12;UBERON:0003057,3.33e-14,12;UBERON:0004111,1.96e-13,122;UBERON:0002240,1.35e-11,6;UBERON:0005174,1.35e-11,6;UBERON:0001137,1.35e-11,6;UBERON:0002420,7.27e-11,8;UBERON:0007245,7.27e-11,8;UBERON:0010009,7.27e-11,8;UBERON:0010011,7.27e-11,8;UBERON:0000454,7.27e-11,8;UBERON:0011216,5.28e-10,194;UBERON:0001948,8.13e-10,5;UBERON:0002315,8.13e-10,5;UBERON:0002950,1.44e-08,4;UBERON:0001891,1.44e-08,4;UBERON:0009616,1.44e-08,4;UBERON:0010286,1.44e-08,4;UBERON:0000483,2.35e-07,174;UBERON:0000119,3.59e-07,176;UBERON:0004684,5.61e-07,3;UBERON:0002275,5.61e-07,3;UBERON:0002038,7.68e-07,3;UBERON:0009663,7.68e-07,3;UBERON:0009661,7.68e-07,3;UBERON:0000125,7.68e-07,3;UBERON:0002308,7.68e-07,3 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02051948181284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0.218025156380447,0.219686182734472,1.36100929351998,0,0,0,0,0,0,0,0.515672092277442,1.41621522601718,2.11596391708813,1.90149421051854,0,0,0,0,0,0,0,1.14058573539325,2.29510095163874,0.841299845405528,6.56997264128748,3.53389665522582,0.979926393719632,0.958454710182364,1.83843757322004,6.60695285996332,4.08599481872601,6.60508093001847,1.45074916503213,2.37867873366265,3.12548022334056,8.93385596804419,2.8138130501584,4.27835093775068,3.53554302568401,4.27115042397309,2.23679334990361,0,0.0755715601067855,0,0,0,0.539703191637817,0,0,0.561777680527007,0.170430322578058,0,0,0,0,0,0,0,0,0.505524445014783,0,0,0.593768556259299,0.173485326766136,0.304465478312141,0.691846491768175,0.150722640552623,0,0.125666591329675,0,0,0,0.323533699894818,0,0,0,1.75668478206928,4.60782754989601,0,0,0,0,4.34392854273986,1.83000241127451,0.628271760564322,2.25971616249959,1.79000820131231,4.1557608911912,2.10913641988085,0,0,0.252722758433675,0.210441855886474,0,0,0.180062129805349,0,0.0680364991513279,0.384341160854549,0.281105173679186,1.03481348295606,0.215567992932842,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196764231747404,0,0,0,0.467061369468678,0,0,0.162137619091711,0,0,0,1.89260953707715,1.3377599609307,0,0,0,0,0,0.201683524623343,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0.114248512609729,0,0,0.193952487167626,0,0,0.147610147979602,0.156998727841375,0,0,0,0,0,0.202860121388503,0,0,0,0.324270453550071,0,0,0.372140947668503,0,0.252578877947112,0,0.482443521363367,0,0,0,0,0,0,0,0.195133647857799,0,0,0,0.163863314715738,0,0.289298117163023,0,0,0,0.275936746304732,3.21101179975584,1.28932855251423,0,0,0.315508219416257,0.390438744296638,0.215423397732799,0.238968797952552,0,0,0,0.584511715822624,0,2.24924921495265,0,0,0.162886959353576,0,1.32745138339963,0.242780636154981,0,0,0,0.307435147943927,0,0,0,0,0,0,0.680879211507576,0.36012218806262,0.258717367565509,0,0,0.178368817602071,0.493647061806363,0.608929898229199,0,0,0,0,0,0,0,0,0,4.63563255026274,0,0,0,0.188368457004691,0,0,0,0,0,0,0.158167996790568,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,0,0,0,0,0,0,0,0.258319646955462,0.168956125490778,0,0.13020438484395,0,0.241584120826006,0.288030006257865,0,0,0,0,0.179026695667481,0.198681354781265,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0.386379188064381,0,0,0,0,4.51801474093653,8.28585425712918,8.59343270159095,9.28007184655913,5.48066015816514,7.55393897389701,10.8003600037089,8.10578165803597,6.79713613476307,5.69536342927002,0,0.399024873401031,0.341467211508268,0,0,0.183843508450014,0.888986911206461,0.412070114477788,0,0,0.25347929989024,0.377252682772152,0.187283014939765,0.512201219238954,0.0574354689556133,0,0.115884325944855,0.38581844092741,0,0.147198920134397,0.342869252385415,0.70990322463735,0,0.290692833264657,0.188218760830661,0,0.365855945745545,0.263069711437843,0.135804113845862,1.68342681497322,0.355905054372522,0.394017929502254,0.818462086339379,0,0.192906610981141,0.499621155875892,0,0.429742108096597,0.382576664137687,0.220591419119515,0 | |||
|short_description=p2@Rab3a | |||
}} |
Revision as of 15:59, 14 September 2013
Short description: | p2@Rab3a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Rab3a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000130468_5end |
EntrezGene: | Rab3a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.63e-28 | 23 |
neuroblast (sensu Vertebrata) | 1.63e-28 | 23 |
neuron | 2.92e-18 | 33 |
neuronal stem cell | 2.92e-18 | 33 |
neuroblast | 2.92e-18 | 33 |
electrically signaling cell | 2.92e-18 | 33 |
electrically responsive cell | 1.19e-14 | 39 |
electrically active cell | 1.19e-14 | 39 |
neural cell | 3.12e-14 | 43 |
ectodermal cell | 8.70e-14 | 44 |
neurectodermal cell | 8.70e-14 | 44 |
raphe nuclei neuron | 5.61e-07 | 3 |
neuron of the substantia nigra | 7.68e-07 | 3 |
embryonic cell | 8.88e-07 | 70 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.