FFCP PHASE1:Mm9::chr5:71233612..71233627,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=14405|HGNC=|MCL_coexpression_id=1|UniProt=Q8BHM6,E9QL38|association_with_transcript=228bp_to_ENSMUST00000031119,ENSMUST00000101143,NM_010252,uc008xqr.1,uc008xqs.1,uc008xqt.1_5end|description=CAGE_peak_3_at_Gabrg1_5end|id=chr5:71233612..71233627,-|ontology_enrichment_celltype=CL:0000117!3.39e-12!23;CL:0000337!3.39e-12!23;CL:0000540!7.52e-08!33;CL:0000047!7.52e-08!33;CL:0000031!7.52e-08!33;CL:0000404!7.52e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,3.34e-11,23;CL:0000337,3.34e-11,23;CL:0002610,1.05e-08,3;CL:0002614,1.33e-08,3;CL:0000540,3.78e-07,33;CL:0000047,3.78e-07,33;CL:0000031,3.78e-07,33;CL:0000404,3.78e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!8.83e-27!52;UBERON:0005068!8.83e-27!52;UBERON:0006241!8.83e-27!52;UBERON:0007135!8.83e-27!52;UBERON:0000955!4.98e-25!50;UBERON:0006238!4.98e-25!50;UBERON:0000033!8.29e-25!63;UBERON:0000073!1.39e-24!75;UBERON:0001016!1.39e-24!75;UBERON:0001017!1.55e-24!73;UBERON:0005743!1.55e-24!73;UBERON:0002616!4.70e-24!49;UBERON:0002020!2.32e-23!34;UBERON:0002346!9.48e-22!71;UBERON:0003075!9.48e-22!71;UBERON:0007284!9.48e-22!71;UBERON:0003056!4.33e-19!49;UBERON:0004121!1.17e-18!102;UBERON:0000924!1.17e-18!102;UBERON:0006601!1.17e-18!102;UBERON:0002791!2.36e-18!29;UBERON:0003528!2.36e-18!29;UBERON:0001893!2.36e-18!29;UBERON:0003080!3.54e-18!40;UBERON:0002780!4.50e-17!39;UBERON:0001890!4.50e-17!39;UBERON:0006240!4.50e-17!39;UBERON:0007811!1.87e-14!86;UBERON:0000956!5.68e-13!21;UBERON:0001869!5.68e-13!21;UBERON:0000203!5.68e-13!21;UBERON:0002021!2.31e-12!10;UBERON:0000411!2.31e-12!10;UBERON:0001950!2.31e-12!10;UBERON:0000153!4.19e-12!94;UBERON:0002619!6.31e-12!17;UBERON:0003076!2.85e-09!12;UBERON:0003057!2.85e-09!12;UBERON:0002298!1.59e-08!6;UBERON:0002240!1.87e-07!6;UBERON:0005174!1.87e-07!6;UBERON:0001137!1.87e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.08e-40,54;UBERON:0001049,6.12e-36,52;UBERON:0005068,6.12e-36,52;UBERON:0006241,6.12e-36,52;UBERON:0007135,6.12e-36,52;UBERON:0001017,1.51e-34,73;UBERON:0001016,1.89e-33,75;UBERON:0000955,3.58e-29,47;UBERON:0006238,3.58e-29,47;UBERON:0002020,1.50e-28,34;UBERON:0002346,4.90e-28,64;UBERON:0003075,4.90e-28,64;UBERON:0007284,4.90e-28,64;UBERON:0002616,1.86e-27,46;UBERON:0004121,5.19e-25,95;UBERON:0000924,5.19e-25,95;UBERON:0006601,5.19e-25,95;UBERON:0002021,3.39e-24,10;UBERON:0000411,3.39e-24,10;UBERON:0001950,3.39e-24,10;UBERON:0010371,8.25e-24,73;UBERON:0003528,4.99e-22,29;UBERON:0002791,4.99e-22,29;UBERON:0001893,4.99e-22,29;UBERON:0003080,1.12e-21,40;UBERON:0002780,8.85e-20,39;UBERON:0001890,8.85e-20,39;UBERON:0006240,8.85e-20,39;UBERON:0002619,2.57e-19,17;UBERON:0000956,5.12e-18,21;UBERON:0001869,5.12e-18,21;UBERON:0000203,5.12e-18,21;UBERON:0010314,1.35e-17,92;UBERON:0003056,7.81e-17,49;UBERON:0003076,2.14e-15,12;UBERON:0003057,2.14e-15,12;UBERON:0000025,5.52e-13,114;UBERON:0004111,1.02e-11,122;UBERON:0002950,3.27e-11,4;UBERON:0001891,3.27e-11,4;UBERON:0009616,3.27e-11,4;UBERON:0010286,3.27e-11,4;UBERON:0002240,4.53e-10,6;UBERON:0005174,4.53e-10,6;UBERON:0001137,4.53e-10,6;UBERON:0011216,9.48e-09,194;UBERON:0004684,1.05e-08,3;UBERON:0002275,1.05e-08,3;UBERON:0002038,1.33e-08,3;UBERON:0009663,1.33e-08,3;UBERON:0009661,1.33e-08,3;UBERON:0000125,1.33e-08,3;UBERON:0002308,1.33e-08,3;UBERON:0001948,5.81e-08,5;UBERON:0002315,5.81e-08,5;UBERON:0004733,5.30e-07,6;UBERON:0004732,5.30e-07,6;UBERON:0002028,5.30e-07,6;UBERON:0007277,5.30e-07,6|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0,1.05798195854407,0.633831403506179,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,1.71390590642282,2.65042249141936,0,0.191690942036473,0,3.30347642998166,6.2566795661742,6.60508093001847,0.131886287730194,0.274462930807229,0,3.07101298901519,11.2552522006336,5.19514042441154,4.41942878210502,4.27115042397309,0.931997229126503,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34224637609238,3.35114730901528,0,0,0,0,7.48953197024113,3.66000482254901,0.879580464790051,5.56237824615285,4.60287823194595,6.02585329222724,4.2182728397617,0.203678727700633,0,0,0.420883711772948,0,0.229902104433473,0,0,0.0680364991513279,0.384341160854549,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83666881697493,1.44066457330998,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.140271639780637,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.58257418949947,5.97779601620236,0,0,0,0,0,0,0,0,0,0,0,2.89189184779626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,4.07935664423121,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,3.3885110557024,3.68260189205742,2.29158205375759,3.09335728218638,3.42541259885321,6.0431511791176,10.8003600037089,7.20513925158753,3.62513927187364,6.21312374102184,0,0,0.170733605754134,0.243106717068294,0,0.183843508450014,0,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0.280924522409647,0.192075457214608,0.229741875822453,0,0.347652977834566,0,0.412085900803307,0.588795680537589,0.342869252385415,0.354951612318675,0,0.290692833264657,0.188218760830661,0.25384382367503,0.73171189149109,0,0.407412341537585,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0.192906610981141,0,0.233931608445408,0,0,0,0|short_description=p3@Gabrg1}} | ||
|EntrezGene=14405 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8BHM6,E9QL38 | |||
|association_with_transcript=228bp_to_ENSMUST00000031119,ENSMUST00000101143,NM_010252,uc008xqr.1,uc008xqs.1,uc008xqt.1_5end | |||
|description=CAGE_peak_3_at_Gabrg1_5end | |||
|id=chr5:71233612..71233627,- | |||
|ontology_enrichment_celltype=CL:0000117!3.39e-12!23;CL:0000337!3.39e-12!23;CL:0000540!7.52e-08!33;CL:0000047!7.52e-08!33;CL:0000031!7.52e-08!33;CL:0000404!7.52e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.34e-11,23;CL:0000337,3.34e-11,23;CL:0002610,1.05e-08,3;CL:0002614,1.33e-08,3;CL:0000540,3.78e-07,33;CL:0000047,3.78e-07,33;CL:0000031,3.78e-07,33;CL:0000404,3.78e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!8.83e-27!52;UBERON:0005068!8.83e-27!52;UBERON:0006241!8.83e-27!52;UBERON:0007135!8.83e-27!52;UBERON:0000955!4.98e-25!50;UBERON:0006238!4.98e-25!50;UBERON:0000033!8.29e-25!63;UBERON:0000073!1.39e-24!75;UBERON:0001016!1.39e-24!75;UBERON:0001017!1.55e-24!73;UBERON:0005743!1.55e-24!73;UBERON:0002616!4.70e-24!49;UBERON:0002020!2.32e-23!34;UBERON:0002346!9.48e-22!71;UBERON:0003075!9.48e-22!71;UBERON:0007284!9.48e-22!71;UBERON:0003056!4.33e-19!49;UBERON:0004121!1.17e-18!102;UBERON:0000924!1.17e-18!102;UBERON:0006601!1.17e-18!102;UBERON:0002791!2.36e-18!29;UBERON:0003528!2.36e-18!29;UBERON:0001893!2.36e-18!29;UBERON:0003080!3.54e-18!40;UBERON:0002780!4.50e-17!39;UBERON:0001890!4.50e-17!39;UBERON:0006240!4.50e-17!39;UBERON:0007811!1.87e-14!86;UBERON:0000956!5.68e-13!21;UBERON:0001869!5.68e-13!21;UBERON:0000203!5.68e-13!21;UBERON:0002021!2.31e-12!10;UBERON:0000411!2.31e-12!10;UBERON:0001950!2.31e-12!10;UBERON:0000153!4.19e-12!94;UBERON:0002619!6.31e-12!17;UBERON:0003076!2.85e-09!12;UBERON:0003057!2.85e-09!12;UBERON:0002298!1.59e-08!6;UBERON:0002240!1.87e-07!6;UBERON:0005174!1.87e-07!6;UBERON:0001137!1.87e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.08e-40,54;UBERON:0001049,6.12e-36,52;UBERON:0005068,6.12e-36,52;UBERON:0006241,6.12e-36,52;UBERON:0007135,6.12e-36,52;UBERON:0001017,1.51e-34,73;UBERON:0001016,1.89e-33,75;UBERON:0000955,3.58e-29,47;UBERON:0006238,3.58e-29,47;UBERON:0002020,1.50e-28,34;UBERON:0002346,4.90e-28,64;UBERON:0003075,4.90e-28,64;UBERON:0007284,4.90e-28,64;UBERON:0002616,1.86e-27,46;UBERON:0004121,5.19e-25,95;UBERON:0000924,5.19e-25,95;UBERON:0006601,5.19e-25,95;UBERON:0002021,3.39e-24,10;UBERON:0000411,3.39e-24,10;UBERON:0001950,3.39e-24,10;UBERON:0010371,8.25e-24,73;UBERON:0003528,4.99e-22,29;UBERON:0002791,4.99e-22,29;UBERON:0001893,4.99e-22,29;UBERON:0003080,1.12e-21,40;UBERON:0002780,8.85e-20,39;UBERON:0001890,8.85e-20,39;UBERON:0006240,8.85e-20,39;UBERON:0002619,2.57e-19,17;UBERON:0000956,5.12e-18,21;UBERON:0001869,5.12e-18,21;UBERON:0000203,5.12e-18,21;UBERON:0010314,1.35e-17,92;UBERON:0003056,7.81e-17,49;UBERON:0003076,2.14e-15,12;UBERON:0003057,2.14e-15,12;UBERON:0000025,5.52e-13,114;UBERON:0004111,1.02e-11,122;UBERON:0002950,3.27e-11,4;UBERON:0001891,3.27e-11,4;UBERON:0009616,3.27e-11,4;UBERON:0010286,3.27e-11,4;UBERON:0002240,4.53e-10,6;UBERON:0005174,4.53e-10,6;UBERON:0001137,4.53e-10,6;UBERON:0011216,9.48e-09,194;UBERON:0004684,1.05e-08,3;UBERON:0002275,1.05e-08,3;UBERON:0002038,1.33e-08,3;UBERON:0009663,1.33e-08,3;UBERON:0009661,1.33e-08,3;UBERON:0000125,1.33e-08,3;UBERON:0002308,1.33e-08,3;UBERON:0001948,5.81e-08,5;UBERON:0002315,5.81e-08,5;UBERON:0004733,5.30e-07,6;UBERON:0004732,5.30e-07,6;UBERON:0002028,5.30e-07,6;UBERON:0007277,5.30e-07,6 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36069264241712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0,0,0,0,0,0,0,0,0,1.05798195854407,0.633831403506179,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,1.71390590642282,2.65042249141936,0,0.191690942036473,0,3.30347642998166,6.2566795661742,6.60508093001847,0.131886287730194,0.274462930807229,0,3.07101298901519,11.2552522006336,5.19514042441154,4.41942878210502,4.27115042397309,0.931997229126503,0,0.151143120213571,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.34224637609238,3.35114730901528,0,0,0,0,7.48953197024113,3.66000482254901,0.879580464790051,5.56237824615285,4.60287823194595,6.02585329222724,4.2182728397617,0.203678727700633,0,0,0.420883711772948,0,0.229902104433473,0,0,0.0680364991513279,0.384341160854549,0,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.83666881697493,1.44066457330998,0,0,0,0,0,0,0,0,0,0.164698954724011,0,0.198956472041151,0,0,0,0,0,0,0,0,0,0.140271639780637,0,0.147610147979602,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.58257418949947,5.97779601620236,0,0,0,0,0,0,0,0,0,0,0,2.89189184779626,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,4.07935664423121,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0,0,0,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19318959403219,0,0,0,0,3.3885110557024,3.68260189205742,2.29158205375759,3.09335728218638,3.42541259885321,6.0431511791176,10.8003600037089,7.20513925158753,3.62513927187364,6.21312374102184,0,0,0.170733605754134,0.243106717068294,0,0.183843508450014,0,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0.280924522409647,0.192075457214608,0.229741875822453,0,0.347652977834566,0,0.412085900803307,0.588795680537589,0.342869252385415,0.354951612318675,0,0.290692833264657,0.188218760830661,0.25384382367503,0.73171189149109,0,0.407412341537585,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0.192906610981141,0,0.233931608445408,0,0,0,0 | |||
|short_description=p3@Gabrg1 | |||
}} |
Revision as of 07:57, 14 September 2013
Short description: | p3@Gabrg1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gabrg1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 228bp_to_ENSMUST00000031119, ENSMUST00000101143, NM_010252, uc008xqr.1, uc008xqs.1, uc008xqt.1_5end |
EntrezGene: | Gabrg1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.34e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.34e-11 | 23 |
raphe nuclei neuron | 1.05e-08 | 3 |
neuron of the substantia nigra | 1.33e-08 | 3 |
neuron | 3.78e-07 | 33 |
neuronal stem cell | 3.78e-07 | 33 |
neuroblast | 3.78e-07 | 33 |
electrically signaling cell | 3.78e-07 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.