FFCP PHASE1:Hg19::chr12:125348434..125348445,-: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DPIdataset=robustDPI | |||
|EntrezGene=949 | |EntrezGene=949 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1664 | |HGNC=1664 | ||
|TSSclassifier=S | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000539320_5end | |association_with_transcript=0bp_to_ENST00000539320_5end |
Revision as of 14:56, 6 July 2013
Short description: | p4@SCARB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_SCARB1_5end |
Coexpression cluster: | C3250_liver_Hepatocyte_Melanocyte_Monocytederived_placenta_Meningeal_Pericytes |
Association with transcript: | 0bp_to_ENST00000539320_5end |
EntrezGene: | SCARB1 |
HGNC: | 1664 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p4@SCARB1 |
---|
0
10
20
30
40
50
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.38e-28 | 253 |
embryonic cell | 5.11e-16 | 250 |
lining cell | 7.74e-10 | 58 |
barrier cell | 7.74e-10 | 58 |
mesodermal cell | 1.50e-08 | 121 |
meso-epithelial cell | 8.12e-08 | 45 |
endodermal cell | 1.09e-07 | 58 |
endothelial cell | 1.58e-07 | 36 |
squamous epithelial cell | 6.25e-07 | 63 |
Showing 1 to 9 of 9 entries
Ontology term | p-value | n |
---|---|---|
subdivision of digestive tract | 2.92e-13 | 118 |
digestive system | 9.57e-12 | 145 |
digestive tract | 9.57e-12 | 145 |
primitive gut | 9.57e-12 | 145 |
endoderm-derived structure | 2.45e-11 | 160 |
endoderm | 2.45e-11 | 160 |
presumptive endoderm | 2.45e-11 | 160 |
abdomen element | 7.48e-10 | 54 |
abdominal segment element | 7.48e-10 | 54 |
trunk region element | 2.30e-09 | 101 |
Showing 1 to 10 of 38 entries
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.