FFCP PHASE1:Hg19::chr18:3450161..3450183,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=7050|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11776|TSSclassifier=S|UniProt=F8W1J9,Q15583|association_with_transcript=0bp_to_ENST00000551402,NM_003244,uc002kly.2,uc010dkm.1_5end|description=CAGE_peak_1_at_TGIF1_5end|id=chr18:3450161..3450183,+|ontology_enrichment_celltype=CL:0000012!2.06e-31!682;CL:0000548!2.14e-31!679;CL:0000004!2.14e-31!679;CL:0000255!2.14e-31!679;CL:0000066!2.64e-28!254;CL:0000063!1.19e-22!578;CL:0000003!3.04e-20!722;CL:0000144!1.63e-17!625;CL:0002371!3.30e-13!591;CL:0002321!1.55e-11!248;CL:0000220!6.64e-11!246;CL:0000860!4.31e-09!45;CL:0002057!5.89e-09!42;CL:0000223!1.39e-07!59;CL:0002076!1.67e-07!43|ontology_enrichment_celltype_v019=CL:0000860;4.56e-15;33!CL:0002057;4.56e-15;33!CL:0000473;3.22e-10;39!CL:0000234;3.22e-10;39!CL:1000507;5.66e-07;10!CL:1000494;5.66e-07;10|ontology_enrichment_celltype_v019_2=CL:0000066,2.40e-28,253;CL:0002321,2.07e-11,250;CL:0000860,5.88e-09,42;CL:0002057,5.88e-09,42;CL:0002076,5.03e-08,42;CL:0000223,5.17e-08,58;CL:0000473,1.56e-07,48;CL:0000234,1.56e-07,48;CL:1000507,5.74e-07,10;CL:1000494,5.74e-07,10|ontology_enrichment_development_v019=CL:0002057;3.51e-07;42|ontology_enrichment_disease=DOID:305!2.07e-09!106;DOID:0050687!9.65e-09!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,2.12e-09,106;DOID:0050687,9.52e-09,143|ontology_enrichment_uberon=UBERON:0000926!1.64e-10!448;UBERON:0004120!1.64e-10!448;UBERON:0006603!1.64e-10!448;UBERON:0000464!4.32e-09!104;UBERON:0000466!2.12e-08!126;UBERON:0003886!5.14e-08!63;UBERON:0002553!1.49e-07!70|ontology_enrichment_uberon_v019=UBERON:0004211;5.66e-07;10!UBERON:0009773;5.66e-07;10!UBERON:0001231;5.66e-07;10!UBERON:0004810;5.66e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0004810,5.74e-07,10|phase1_expression=35.6089623370291,21.6241529129893,44.118728482039,11.0080628188443,18.7723659659461,60.1913581629254,25.3299878168311,17.0564365825244,4.96252693579693,43.4949067607671,50.2416840940148,70.993445942306,68.051880382941,44.9271861244969,39.1048903358941,34.9609076154923,41.5859224336544,40.8973650616929,44.8898174887266,31.1496276934273,26.5200898617529,30.4051079833745,26.9061827903193,24.3636476629734,26.112869035719,0.458480434487708,0.328402357799783,0.0787107813136792,42.8767061765305,30.3225224496798,38.8588469523351,33.0991640812414,35.5422984158335,124.976855436374,0,0,13.7992206487378,20.4978301156795,25.2686003812379,14.7567392086779,19.2567307846335,21.0530882912337,16.2272607609538,110.938856188808,171.933554378408,105.766650677888,114.122657120691,142.675257143574,153.614359963971,90.6231035814774,89.4000865786561,111.619612507412,136.864035252438,100.695610639077,151.677664985663,147.017267182774,161.287534684187,137.081325511502,150.287191154113,150.515713698688,163.030967078756,68.609070438837,99.5323651531943,83.9662758549407,91.415910168004,82.8382428049064,76.6071366264557,92.7107574797383,110.032895786662,124.449208016032,65.3831462844038,100.908072260593,78.7991344727802,8.87272202510155,9.35458919846192,12.9988360215193,25.9479137948404,30.9364399253503,21.3765030307117,3.70516566863623,1.59133341759272,1.64397738388171,17.5996244461323,21.2994058392231,11.5636203002262,11.5217160092957,13.2130675721884,13.2193061189531,21.8144808019005,19.0810750907073,21.0608798570496,35.2342313622563,43.1968747781509,19.8256992868539,40.3566165346706,19.7538063581308,20.064396551611,25.1526888159465,27.5506008659342,2.17342444007882,86.0434783912679,81.4330225863741,62.3445530905316,7.46450061130663,34.4688911745559,27.470202928369,18.143858872256,2.43373507478783,1.04047478047903,3.61763390128087,3.59255023121603,5.506258628966,24.615569484902,21.1357254190873,20.9071047609954,6.00539516297101,30.6576394881537,35.7372543301935,39.2180522630229,35.6793264042988,39.7160906852415,44.6712460890736,23.6402936952103,26.3652418978102,26.2354525759926,31.0178200177662,46.8042958244997,19.1526406063496,31.2905029066704,16.6548064465219,46.3233045996527,34.8764447045891,49.8663991189768,22.7706666002277,35.5949916551482,36.6461692970884,41.3548692466572,39.4174244945135,40.0827624775648,40.7982091331118,41.3701840614624,17.2892379656981,85.97368803704,55.6176664176644,19.1482962256263,17.4129737299267,13.1628380913677,2.62339686735876,2.85997455390064,1.48583000531826,46.9079281385424,46.4526681357307,42.3511411961265,32.7878606315926,28.9454610984835,36.3155815360889,33.8571845789633,19.639673696869,12.0960529313481,26.7776490211736,59.6187389321538,34.9725168630516,75.4151757823844,27.2070679455943,55.8997944038414,19.9138394073498,19.3095260458506,15.7656072676651,47.5281576144238,49.3618142975427,35.541138322499,64.572404543671,34.9002237733493,57.5644148828145,31.8062049085004,31.7842584278095,33.3671135649311,42.4518198708244,31.9201543978521,29.7159128075423,42.699598291882,32.0667812942308,19.6062952301853,29.5016371832617,17.3269617300266,27.0929795484427,13.82822218752,106.381930052544,32.46464799035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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=7050 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11776 | |||
|TSSclassifier=S | |||
|UniProt=F8W1J9,Q15583 | |||
|association_with_transcript=0bp_to_ENST00000551402,NM_003244,uc002kly.2,uc010dkm.1_5end | |||
|description=CAGE_peak_1_at_TGIF1_5end | |||
|id=chr18:3450161..3450183,+ | |||
|ontology_enrichment_celltype=CL:0000012!2.06e-31!682;CL:0000548!2.14e-31!679;CL:0000004!2.14e-31!679;CL:0000255!2.14e-31!679;CL:0000066!2.64e-28!254;CL:0000063!1.19e-22!578;CL:0000003!3.04e-20!722;CL:0000144!1.63e-17!625;CL:0002371!3.30e-13!591;CL:0002321!1.55e-11!248;CL:0000220!6.64e-11!246;CL:0000860!4.31e-09!45;CL:0002057!5.89e-09!42;CL:0000223!1.39e-07!59;CL:0002076!1.67e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.56e-15;33!CL:0002057;4.56e-15;33!CL:0000473;3.22e-10;39!CL:0000234;3.22e-10;39!CL:1000507;5.66e-07;10!CL:1000494;5.66e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.40e-28,253;CL:0002321,2.07e-11,250;CL:0000860,5.88e-09,42;CL:0002057,5.88e-09,42;CL:0002076,5.03e-08,42;CL:0000223,5.17e-08,58;CL:0000473,1.56e-07,48;CL:0000234,1.56e-07,48;CL:1000507,5.74e-07,10;CL:1000494,5.74e-07,10 | |||
|ontology_enrichment_development_v019=CL:0002057;3.51e-07;42 | |||
|ontology_enrichment_disease=DOID:305!2.07e-09!106;DOID:0050687!9.65e-09!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.12e-09,106;DOID:0050687,9.52e-09,143 | |||
|ontology_enrichment_uberon=UBERON:0000926!1.64e-10!448;UBERON:0004120!1.64e-10!448;UBERON:0006603!1.64e-10!448;UBERON:0000464!4.32e-09!104;UBERON:0000466!2.12e-08!126;UBERON:0003886!5.14e-08!63;UBERON:0002553!1.49e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;5.66e-07;10!UBERON:0009773;5.66e-07;10!UBERON:0001231;5.66e-07;10!UBERON:0004810;5.66e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,5.74e-07,10 | |||
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| |||
|short_description=p1@TGIF1 | |||
}} |
Revision as of 17:23, 11 September 2013
Short description: | p1@TGIF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TGIF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000551402, NM_003244, uc002kly.2, uc010dkm.1_5end |
EntrezGene: | TGIF1 |
HGNC: | 11776 |
UniProt: | F8W1J9Q15583 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.40e-28 | 253 |
embryonic cell | 2.07e-11 | 250 |
classical monocyte | 5.88e-09 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.88e-09 | 42 |
endo-epithelial cell | 5.03e-08 | 42 |
endodermal cell | 5.17e-08 | 58 |
defensive cell | 1.56e-07 | 48 |
phagocyte | 1.56e-07 | 48 |
kidney tubule cell | 5.74e-07 | 10 |
nephron tubule epithelial cell | 5.74e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nephron tubule epithelium | 5.74e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.12e-09 | 106 |
cell type cancer | 9.52e-09 | 143 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.