FFCP PHASE1:Hg19::chr2:162272716..162272753,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10716|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11590|TSSclassifier=S|UniProt=|association_with_transcript=-88bp_to_ENST00000463544_5end|coexpression_cluster_id=C1619|description=CAGE_peak_3_at_TBR1_5end|id=chr2:162272716..162272753,+|ontology_enrichment_celltype=CL:0000047!1.59e-12!8;CL:0000540!6.68e-11!6;CL:0000031!6.68e-11!6;CL:0000404!6.68e-11!6|ontology_enrichment_celltype_v019=CL:0000540;1.45e-08;6!CL:0000404;1.45e-08;6|ontology_enrichment_celltype_v019_2=CL:0000047,5.63e-11,8;CL:0000540,1.38e-08,6;CL:0000031,1.38e-08,6;CL:0000404,1.38e-08,6|ontology_enrichment_development_v019=UBERON:0006601;2.08e-10;82!CL:0000031;1.45e-08;6!UBERON:0006238;1.05e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002619!1.45e-80!22;UBERON:0001950!1.41e-73!20;UBERON:0000956!1.31e-70!25;UBERON:0000203!1.31e-70!25;UBERON:0001893!3.60e-66!34;UBERON:0001869!4.13e-65!32;UBERON:0002791!9.59e-63!33;UBERON:0001017!2.66e-60!82;UBERON:0002780!1.65e-58!41;UBERON:0001890!1.65e-58!41;UBERON:0006240!1.65e-58!41;UBERON:0005743!3.72e-57!86;UBERON:0003080!5.42e-57!42;UBERON:0002020!7.31e-56!34;UBERON:0003528!7.31e-56!34;UBERON:0000073!6.88e-54!94;UBERON:0001016!6.88e-54!94;UBERON:0000955!6.58e-47!69;UBERON:0006238!6.58e-47!69;UBERON:0001049!7.85e-44!57;UBERON:0005068!7.85e-44!57;UBERON:0006241!7.85e-44!57;UBERON:0007135!7.85e-44!57;UBERON:0002616!3.85e-42!59;UBERON:0003056!1.74e-37!61;UBERON:0003075!1.77e-31!86;UBERON:0007284!1.77e-31!86;UBERON:0002346!8.89e-30!90;UBERON:0004121!4.24e-28!169;UBERON:0000924!2.98e-27!173;UBERON:0006601!2.98e-27!173;UBERON:0000153!2.41e-25!129;UBERON:0007811!2.41e-25!129;UBERON:0000033!3.97e-25!123;UBERON:0001871!3.57e-24!7;UBERON:0000200!3.72e-24!6;UBERON:0007023!9.21e-22!115;UBERON:0002021!5.11e-21!5;UBERON:0001872!1.10e-20!5;UBERON:0000349!4.98e-19!5;UBERON:0002771!3.64e-13!3;UBERON:0000025!2.94e-09!194;UBERON:0001870!5.40e-09!2;UBERON:0001876!1.10e-08!2;UBERON:0001954!1.62e-08!2;UBERON:0003022!1.62e-08!2;UBERON:0002421!1.62e-08!2;UBERON:0002600!1.62e-08!2;UBERON:0002360!2.20e-08!2;UBERON:0000094!2.20e-08!2;UBERON:0007645!2.20e-08!2;UBERON:0000064!2.88e-08!219|ontology_enrichment_uberon_v019=UBERON:0002619;4.04e-96;22!UBERON:0001950;4.71e-96;20!UBERON:0000956;1.73e-84;25!UBERON:0000203;1.73e-84;25!UBERON:0001869;2.86e-70;32!UBERON:0001893;2.89e-64;34!UBERON:0002791;1.76e-63;32!UBERON:0003528;7.40e-59;34!UBERON:0002020;7.40e-59;34!UBERON:0002780;5.08e-43;41!UBERON:0001890;5.08e-43;41!UBERON:0000200;3.72e-31;6!UBERON:0002021;4.81e-27;5!UBERON:0000073;8.01e-27;53!UBERON:0002616;8.01e-27;53!UBERON:0001872;1.50e-26;5!UBERON:0001871;2.11e-26;6!UBERON:0001017;1.13e-22;75!UBERON:0000955;2.88e-22;68!UBERON:0001016;1.20e-17;83!UBERON:0001870;3.42e-16;3!UBERON:0000349;4.87e-16;5!UBERON:0002771;8.83e-12;2!UBERON:0002702;2.11e-11;2!UBERON:0001876;7.88e-11;2!UBERON:0011216;4.92e-08;132!UBERON:0002902;8.21e-07;1!UBERON:0009899;8.21e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002619,3.58e-96,22;UBERON:0001950,4.15e-96,20;UBERON:0000956,1.56e-84,25;UBERON:0000203,1.56e-84,25;UBERON:0001869,6.45e-79,32;UBERON:0001893,4.08e-74,34;UBERON:0002791,4.59e-72,32;UBERON:0003528,1.15e-67,34;UBERON:0002020,1.15e-67,34;UBERON:0002780,6.56e-61,41;UBERON:0001890,6.56e-61,41;UBERON:0003080,6.56e-61,41;UBERON:0006240,6.56e-61,41;UBERON:0001017,3.05e-58,81;UBERON:0001016,6.49e-52,89;UBERON:0000955,1.13e-48,68;UBERON:0006238,1.13e-48,68;UBERON:0000073,3.13e-46,53;UBERON:0002616,3.13e-46,53;UBERON:0001049,1.58e-43,56;UBERON:0005068,1.58e-43,56;UBERON:0006241,1.58e-43,56;UBERON:0007135,1.58e-43,56;UBERON:0003056,1.34e-39,61;UBERON:0000200,4.02e-31,6;UBERON:0003075,2.83e-28,82;UBERON:0007284,2.83e-28,82;UBERON:0002021,5.21e-27,5;UBERON:0002346,9.76e-27,86;UBERON:0001872,1.42e-26,5;UBERON:0001871,2.06e-26,6;UBERON:0004121,2.25e-24,171;UBERON:0000924,2.25e-24,171;UBERON:0006601,2.25e-24,171;UBERON:0010371,2.86e-21,104;UBERON:0011216,5.01e-20,223;UBERON:0007023,8.78e-19,114;UBERON:0010314,2.54e-17,132;UBERON:0001870,3.00e-16,3;UBERON:0000349,4.58e-16,5;UBERON:0002771,9.31e-12,2;UBERON:0002702,2.06e-11,2;UBERON:0001876,7.11e-11,2;UBERON:0000025,2.90e-09,192;UBERON:0002902,8.21e-07,1;UBERON:0009899,8.21e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.70272798147026,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10716 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11590 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-88bp_to_ENST00000463544_5end | |||
|coexpression_cluster_id=C1619 | |||
|description=CAGE_peak_3_at_TBR1_5end | |||
|id=chr2:162272716..162272753,+ | |||
|ontology_enrichment_celltype=CL:0000047!1.59e-12!8;CL:0000540!6.68e-11!6;CL:0000031!6.68e-11!6;CL:0000404!6.68e-11!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.45e-08;6!CL:0000404;1.45e-08;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,5.63e-11,8;CL:0000540,1.38e-08,6;CL:0000031,1.38e-08,6;CL:0000404,1.38e-08,6 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.08e-10;82!CL:0000031;1.45e-08;6!UBERON:0006238;1.05e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!1.45e-80!22;UBERON:0001950!1.41e-73!20;UBERON:0000956!1.31e-70!25;UBERON:0000203!1.31e-70!25;UBERON:0001893!3.60e-66!34;UBERON:0001869!4.13e-65!32;UBERON:0002791!9.59e-63!33;UBERON:0001017!2.66e-60!82;UBERON:0002780!1.65e-58!41;UBERON:0001890!1.65e-58!41;UBERON:0006240!1.65e-58!41;UBERON:0005743!3.72e-57!86;UBERON:0003080!5.42e-57!42;UBERON:0002020!7.31e-56!34;UBERON:0003528!7.31e-56!34;UBERON:0000073!6.88e-54!94;UBERON:0001016!6.88e-54!94;UBERON:0000955!6.58e-47!69;UBERON:0006238!6.58e-47!69;UBERON:0001049!7.85e-44!57;UBERON:0005068!7.85e-44!57;UBERON:0006241!7.85e-44!57;UBERON:0007135!7.85e-44!57;UBERON:0002616!3.85e-42!59;UBERON:0003056!1.74e-37!61;UBERON:0003075!1.77e-31!86;UBERON:0007284!1.77e-31!86;UBERON:0002346!8.89e-30!90;UBERON:0004121!4.24e-28!169;UBERON:0000924!2.98e-27!173;UBERON:0006601!2.98e-27!173;UBERON:0000153!2.41e-25!129;UBERON:0007811!2.41e-25!129;UBERON:0000033!3.97e-25!123;UBERON:0001871!3.57e-24!7;UBERON:0000200!3.72e-24!6;UBERON:0007023!9.21e-22!115;UBERON:0002021!5.11e-21!5;UBERON:0001872!1.10e-20!5;UBERON:0000349!4.98e-19!5;UBERON:0002771!3.64e-13!3;UBERON:0000025!2.94e-09!194;UBERON:0001870!5.40e-09!2;UBERON:0001876!1.10e-08!2;UBERON:0001954!1.62e-08!2;UBERON:0003022!1.62e-08!2;UBERON:0002421!1.62e-08!2;UBERON:0002600!1.62e-08!2;UBERON:0002360!2.20e-08!2;UBERON:0000094!2.20e-08!2;UBERON:0007645!2.20e-08!2;UBERON:0000064!2.88e-08!219 | |||
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|short_description=p3@TBR1 | |||
}} |
Revision as of 14:21, 12 September 2013
Short description: | p3@TBR1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TBR1_5end |
Coexpression cluster: | C1619_medulloblastoma_occipital_duodenum_Neural_parietal_temporal_Neurons |
Association with transcript: | -88bp_to_ENST00000463544_5end |
EntrezGene: | TBR1 |
HGNC: | 11590 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 5.63e-11 | 8 |
neuron | 1.38e-08 | 6 |
neuroblast | 1.38e-08 | 6 |
electrically signaling cell | 1.38e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.