FFCP PHASE1:Hg19::chr4:48988285..48988298,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80157|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26133|TSSclassifier=S|UniProt=Q9H720|association_with_transcript=20bp_to_NM_025087,uc003gyv.2_5end|coexpression_cluster_id=C4421|description=CAGE_peak_1_at_CWH43_5end|id=chr4:48988285..48988298,+|ontology_enrichment_celltype=CL:0002076!6.73e-18!43;CL:0002159!7.53e-14!13;CL:0002368!8.06e-13!13;CL:0000622!4.50e-12!5;CL:0000223!1.58e-11!59;CL:0000362!1.03e-10!8;CL:0000154!5.52e-10!6;CL:0000240!7.91e-10!6;CL:0000311!7.91e-10!6;CL:0000079!7.91e-10!6;CL:0000237!7.91e-10!6;CL:0000036!7.91e-10!6;CL:0000357!7.91e-10!6;CL:0000114!7.91e-10!6;CL:0002202!1.56e-08!9;CL:0002632!1.56e-08!9;CL:0000312!3.39e-08!5;CL:0002621!5.97e-08!3;CL:0002623!9.30e-08!3;CL:0002328!1.89e-07!3;CL:0000068!2.17e-07!3;CL:0000069!2.17e-07!3;CL:0000307!2.17e-07!3;CL:0000377!2.17e-07!3;CL:0002251!4.01e-07!21;CL:0002077!8.83e-07!33|ontology_enrichment_celltype_v019=CL:0002159;2.15e-16;14!CL:0000622;1.29e-12;5!CL:0000362;1.05e-10;9!CL:0000154;1.59e-10;6!CL:0002368;1.44e-09;13!CL:0000317;1.18e-08;2!CL:1000448;1.18e-08;2!CL:0002308;1.18e-08;2!CL:0002140;1.18e-08;2!CL:0002077;1.21e-08;34!CL:0000575;1.64e-08;2!CL:0002076;7.24e-08;42!CL:0000312;1.04e-07;5!CL:0000150;5.00e-07;9|ontology_enrichment_celltype_v019_2=CL:0002159,2.00e-16,14;CL:0000622,1.52e-12,5;CL:0000362,1.05e-10,9;CL:0000154,1.82e-10,6;CL:0002076,2.12e-10,42;CL:0002077,1.36e-09,34;CL:0002368,1.53e-09,13;CL:0000317,1.12e-08,2;CL:1000448,1.12e-08,2;CL:0002308,1.12e-08,2;CL:0002140,1.12e-08,2;CL:0000575,1.25e-08,2;CL:0000312,1.07e-07,5;CL:0000150,5.46e-07,9;CL:0000223,7.23e-07,58|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000161!5.69e-17!35;UBERON:0004119!2.30e-14!169;UBERON:0000925!2.30e-14!169;UBERON:0006595!2.30e-14!169;UBERON:0000166!2.04e-13!21;UBERON:0001004!5.47e-13!72;UBERON:0003102!8.34e-12!95;UBERON:0001007!9.31e-12!155;UBERON:0001555!9.31e-12!155;UBERON:0007026!9.31e-12!155;UBERON:0000165!5.98e-11!28;UBERON:0000930!5.98e-11!28;UBERON:0003408!6.03e-10!10;UBERON:0001044!1.49e-09!6;UBERON:0003293!1.49e-09!6;UBERON:0003294!1.49e-09!6;UBERON:0010047!1.49e-09!6;UBERON:0000167!1.49e-09!6;UBERON:0001008!2.10e-09!45;UBERON:0002530!3.17e-09!59;UBERON:0004921!1.36e-08!129;UBERON:0004185!1.36e-08!129;UBERON:0006554!1.93e-08!44;UBERON:0001444!2.59e-08!48;UBERON:0006947!3.54e-08!3;UBERON:0004054!3.54e-08!3;UBERON:0001949!5.97e-08!3;UBERON:0001003!7.85e-08!14;UBERON:0007376!7.85e-08!14;UBERON:0007383!7.85e-08!14;UBERON:0003064!1.42e-07!37;UBERON:0004815!1.89e-07!3;UBERON:0002031!1.89e-07!3;UBERON:0007023!1.91e-07!115;UBERON:0003101!4.07e-07!22;UBERON:0000079!4.07e-07!22;UBERON:0000078!4.35e-07!18;UBERON:0000077!4.97e-07!130;UBERON:0007196!5.22e-07!14;UBERON:0001558!5.22e-07!14|ontology_enrichment_uberon_v019=UBERON:0001003;6.39e-09;15!UBERON:0007376;6.39e-09;15!UBERON:0000341;9.94e-09;2!UBERON:0002419;1.18e-08;2!UBERON:0007771;1.18e-08;2!UBERON:0003297;1.18e-08;2!UBERON:0001821;1.18e-08;2!UBERON:0003487;1.18e-08;2!UBERON:0001820;1.18e-08;2!UBERON:0000165;1.59e-07;28!UBERON:0004921;6.31e-07;33!UBERON:0010371;7.39e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0000161,9.85e-11,36;UBERON:0003102,9.88e-11,99;UBERON:0004119,1.23e-10,160;UBERON:0000925,1.23e-10,160;UBERON:0006595,1.23e-10,160;UBERON:0000166,6.92e-10,22;UBERON:0001003,6.39e-09,15;UBERON:0007376,6.39e-09,15;UBERON:0007383,6.39e-09,15;UBERON:0002419,1.12e-08,2;UBERON:0007771,1.12e-08,2;UBERON:0003297,1.12e-08,2;UBERON:0001821,1.12e-08,2;UBERON:0003487,1.12e-08,2;UBERON:0001820,1.12e-08,2;UBERON:0005089,1.12e-08,2;UBERON:0005088,1.12e-08,2;UBERON:0000341,1.16e-08,2;UBERON:0001007,3.36e-08,145;UBERON:0001555,3.36e-08,145;UBERON:0007026,3.36e-08,145;UBERON:0001004,6.48e-08,74;UBERON:0006554,1.27e-07,47;UBERON:0000153,1.51e-07,62;UBERON:0007811,1.51e-07,62;UBERON:0001008,2.03e-07,48;UBERON:0000165,3.44e-07,29;UBERON:0000930,3.44e-07,29;UBERON:0004921,6.53e-07,118|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,0.6024118375565,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,2.5500670180478,2.96627554227544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.60456474173561,5.72766853240753,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.04851312879678,3.37205259772859,4.72486170334665,0.185176890317059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.1266264586358,0.179117045405697,0.290633938513962,0,0,0,0.207328115540772,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=80157 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26133 | |||
|TSSclassifier=S | |||
|UniProt=Q9H720 | |||
|association_with_transcript=20bp_to_NM_025087,uc003gyv.2_5end | |||
|coexpression_cluster_id=C4421 | |||
|description=CAGE_peak_1_at_CWH43_5end | |||
|id=chr4:48988285..48988298,+ | |||
|ontology_enrichment_celltype=CL:0002076!6.73e-18!43;CL:0002159!7.53e-14!13;CL:0002368!8.06e-13!13;CL:0000622!4.50e-12!5;CL:0000223!1.58e-11!59;CL:0000362!1.03e-10!8;CL:0000154!5.52e-10!6;CL:0000240!7.91e-10!6;CL:0000311!7.91e-10!6;CL:0000079!7.91e-10!6;CL:0000237!7.91e-10!6;CL:0000036!7.91e-10!6;CL:0000357!7.91e-10!6;CL:0000114!7.91e-10!6;CL:0002202!1.56e-08!9;CL:0002632!1.56e-08!9;CL:0000312!3.39e-08!5;CL:0002621!5.97e-08!3;CL:0002623!9.30e-08!3;CL:0002328!1.89e-07!3;CL:0000068!2.17e-07!3;CL:0000069!2.17e-07!3;CL:0000307!2.17e-07!3;CL:0000377!2.17e-07!3;CL:0002251!4.01e-07!21;CL:0002077!8.83e-07!33 | |||
|ontology_enrichment_celltype_v019=CL:0002159;2.15e-16;14!CL:0000622;1.29e-12;5!CL:0000362;1.05e-10;9!CL:0000154;1.59e-10;6!CL:0002368;1.44e-09;13!CL:0000317;1.18e-08;2!CL:1000448;1.18e-08;2!CL:0002308;1.18e-08;2!CL:0002140;1.18e-08;2!CL:0002077;1.21e-08;34!CL:0000575;1.64e-08;2!CL:0002076;7.24e-08;42!CL:0000312;1.04e-07;5!CL:0000150;5.00e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,2.00e-16,14;CL:0000622,1.52e-12,5;CL:0000362,1.05e-10,9;CL:0000154,1.82e-10,6;CL:0002076,2.12e-10,42;CL:0002077,1.36e-09,34;CL:0002368,1.53e-09,13;CL:0000317,1.12e-08,2;CL:1000448,1.12e-08,2;CL:0002308,1.12e-08,2;CL:0002140,1.12e-08,2;CL:0000575,1.25e-08,2;CL:0000312,1.07e-07,5;CL:0000150,5.46e-07,9;CL:0000223,7.23e-07,58 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000161!5.69e-17!35;UBERON:0004119!2.30e-14!169;UBERON:0000925!2.30e-14!169;UBERON:0006595!2.30e-14!169;UBERON:0000166!2.04e-13!21;UBERON:0001004!5.47e-13!72;UBERON:0003102!8.34e-12!95;UBERON:0001007!9.31e-12!155;UBERON:0001555!9.31e-12!155;UBERON:0007026!9.31e-12!155;UBERON:0000165!5.98e-11!28;UBERON:0000930!5.98e-11!28;UBERON:0003408!6.03e-10!10;UBERON:0001044!1.49e-09!6;UBERON:0003293!1.49e-09!6;UBERON:0003294!1.49e-09!6;UBERON:0010047!1.49e-09!6;UBERON:0000167!1.49e-09!6;UBERON:0001008!2.10e-09!45;UBERON:0002530!3.17e-09!59;UBERON:0004921!1.36e-08!129;UBERON:0004185!1.36e-08!129;UBERON:0006554!1.93e-08!44;UBERON:0001444!2.59e-08!48;UBERON:0006947!3.54e-08!3;UBERON:0004054!3.54e-08!3;UBERON:0001949!5.97e-08!3;UBERON:0001003!7.85e-08!14;UBERON:0007376!7.85e-08!14;UBERON:0007383!7.85e-08!14;UBERON:0003064!1.42e-07!37;UBERON:0004815!1.89e-07!3;UBERON:0002031!1.89e-07!3;UBERON:0007023!1.91e-07!115;UBERON:0003101!4.07e-07!22;UBERON:0000079!4.07e-07!22;UBERON:0000078!4.35e-07!18;UBERON:0000077!4.97e-07!130;UBERON:0007196!5.22e-07!14;UBERON:0001558!5.22e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;6.39e-09;15!UBERON:0007376;6.39e-09;15!UBERON:0000341;9.94e-09;2!UBERON:0002419;1.18e-08;2!UBERON:0007771;1.18e-08;2!UBERON:0003297;1.18e-08;2!UBERON:0001821;1.18e-08;2!UBERON:0003487;1.18e-08;2!UBERON:0001820;1.18e-08;2!UBERON:0000165;1.59e-07;28!UBERON:0004921;6.31e-07;33!UBERON:0010371;7.39e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000161,9.85e-11,36;UBERON:0003102,9.88e-11,99;UBERON:0004119,1.23e-10,160;UBERON:0000925,1.23e-10,160;UBERON:0006595,1.23e-10,160;UBERON:0000166,6.92e-10,22;UBERON:0001003,6.39e-09,15;UBERON:0007376,6.39e-09,15;UBERON:0007383,6.39e-09,15;UBERON:0002419,1.12e-08,2;UBERON:0007771,1.12e-08,2;UBERON:0003297,1.12e-08,2;UBERON:0001821,1.12e-08,2;UBERON:0003487,1.12e-08,2;UBERON:0001820,1.12e-08,2;UBERON:0005089,1.12e-08,2;UBERON:0005088,1.12e-08,2;UBERON:0000341,1.16e-08,2;UBERON:0001007,3.36e-08,145;UBERON:0001555,3.36e-08,145;UBERON:0007026,3.36e-08,145;UBERON:0001004,6.48e-08,74;UBERON:0006554,1.27e-07,47;UBERON:0000153,1.51e-07,62;UBERON:0007811,1.51e-07,62;UBERON:0001008,2.03e-07,48;UBERON:0000165,3.44e-07,29;UBERON:0000930,3.44e-07,29;UBERON:0004921,6.53e-07,118 | |||
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|short_description=p1@CWH43 | |||
}} |
Revision as of 11:05, 13 September 2013
Short description: | p1@CWH43 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CWH43_5end |
Coexpression cluster: | C4421_glassy_squamous_colon_nasal_salivary_Prostate_seminal |
Association with transcript: | 20bp_to_NM_025087, uc003gyv.2_5end |
EntrezGene: | CWH43 |
HGNC: | 26133 |
UniProt: | Q9H720 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 2.00e-16 | 14 |
acinar cell | 1.52e-12 | 5 |
epidermal cell | 1.05e-10 | 9 |
protein secreting cell | 1.82e-10 | 6 |
endo-epithelial cell | 2.12e-10 | 42 |
ecto-epithelial cell | 1.36e-09 | 34 |
respiratory epithelial cell | 1.53e-09 | 13 |
sebum secreting cell | 1.12e-08 | 2 |
epithelial cell of sweat gland | 1.12e-08 | 2 |
epithelial cell of skin gland | 1.12e-08 | 2 |
acinar cell of sebaceous gland | 1.12e-08 | 2 |
corneal epithelial cell | 1.25e-08 | 2 |
keratinocyte | 1.07e-07 | 5 |
glandular epithelial cell | 5.46e-07 | 9 |
endodermal cell | 7.23e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
orifice | 9.85e-11 | 36 |
surface structure | 9.88e-11 | 99 |
endoderm-derived structure | 1.23e-10 | 160 |
endoderm | 1.23e-10 | 160 |
presumptive endoderm | 1.23e-10 | 160 |
oral opening | 6.92e-10 | 22 |
skin epidermis | 6.39e-09 | 15 |
outer epithelium | 6.39e-09 | 15 |
enveloping layer of ectoderm | 6.39e-09 | 15 |
skin gland | 1.12e-08 | 2 |
epidermis gland | 1.12e-08 | 2 |
gland of integumental system | 1.12e-08 | 2 |
sebaceous gland | 1.12e-08 | 2 |
skin sebaceous gland | 1.12e-08 | 2 |
sweat gland | 1.12e-08 | 2 |
sweat gland placode | 1.12e-08 | 2 |
sebaceous gland placode | 1.12e-08 | 2 |
throat | 1.16e-08 | 2 |
digestive system | 3.36e-08 | 145 |
digestive tract | 3.36e-08 | 145 |
primitive gut | 3.36e-08 | 145 |
respiratory system | 6.48e-08 | 74 |
urinary system structure | 1.27e-07 | 47 |
anterior region of body | 1.51e-07 | 62 |
craniocervical region | 1.51e-07 | 62 |
renal system | 2.03e-07 | 48 |
mouth | 3.44e-07 | 29 |
stomodeum | 3.44e-07 | 29 |
subdivision of digestive tract | 6.53e-07 | 118 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.