FFCP PHASE1:Hg19::chr4:106816592..106816603,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=255743|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=27405|TSSclassifier=S|UniProt=Q6UXI9,E9PCQ1,E9PCK8,E9PF04,B4DIT4,B4DYK3,B4E2H7,B4E3H2,E9PE64|association_with_transcript=0bp_to_ENST00000379987,ENST00000427316,ENST00000453617,ENST00000514622,NM_001033047,NM_001184690,NM_001184691,NM_001184692,NM_001184693_5end|coexpression_cluster_id=C2768|description=CAGE_peak_3_at_NPNT_5end|id=chr4:106816592..106816603,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0008947;1.06e-09;29!UBERON:0006595;2.55e-07;86|ontology_enrichment_disease=DOID:305!7.65e-14!106;DOID:0050687!2.73e-08!143|ontology_enrichment_disease_v019=DOID:299;2.01e-08;25|ontology_enrichment_disease_v019_2=DOID:305,2.51e-09,106;DOID:299,1.98e-08,25|ontology_enrichment_uberon=UBERON:0007023!8.36e-33!115;UBERON:0004921!9.16e-16!129;UBERON:0004185!9.16e-16!129;UBERON:0001007!2.02e-15!155;UBERON:0001555!2.02e-15!155;UBERON:0007026!2.02e-15!155;UBERON:0004119!4.32e-15!169;UBERON:0000925!4.32e-15!169;UBERON:0006595!4.32e-15!169;UBERON:0000481!1.22e-14!347;UBERON:0003080!8.18e-12!42;UBERON:0001049!2.55e-11!57;UBERON:0005068!2.55e-11!57;UBERON:0006241!2.55e-11!57;UBERON:0007135!2.55e-11!57;UBERON:0000062!3.69e-11!511;UBERON:0002780!3.77e-11!41;UBERON:0001890!3.77e-11!41;UBERON:0006240!3.77e-11!41;UBERON:0000077!3.78e-11!130;UBERON:0005409!5.02e-10!35;UBERON:0000468!7.23e-10!659;UBERON:0002616!8.05e-10!59;UBERON:0001737!1.18e-09!9;UBERON:0002020!2.28e-09!34;UBERON:0003528!2.28e-09!34;UBERON:0000955!2.52e-09!69;UBERON:0006238!2.52e-09!69;UBERON:0001893!2.65e-09!34;UBERON:0001017!4.10e-09!82;UBERON:0000064!5.16e-09!219;UBERON:0000922!5.23e-09!612;UBERON:0003075!5.46e-09!86;UBERON:0007284!5.46e-09!86;UBERON:0002791!6.82e-09!33;UBERON:0005743!6.85e-09!86;UBERON:0002346!1.41e-08!90;UBERON:0003056!2.36e-08!61;UBERON:0001041!2.37e-08!98;UBERON:0001869!2.71e-08!32;UBERON:0000467!3.69e-08!625;UBERON:0001557!4.24e-08!19;UBERON:0000480!4.51e-08!626;UBERON:0000153!5.72e-08!129;UBERON:0007811!5.72e-08!129;UBERON:0000065!8.30e-08!53;UBERON:0000073!1.18e-07!94;UBERON:0001016!1.18e-07!94;UBERON:0002050!1.37e-07!605;UBERON:0005423!1.37e-07!605;UBERON:0000160!2.52e-07!27;UBERON:0000923!3.05e-07!604;UBERON:0005291!3.05e-07!604;UBERON:0006598!3.05e-07!604;UBERON:0002532!3.05e-07!604;UBERON:0001004!6.98e-07!72;UBERON:0002619!7.21e-07!22;UBERON:0000033!7.39e-07!123;UBERON:0001950!9.31e-07!20|ontology_enrichment_uberon_v019=UBERON:0001737;1.57e-17;9!UBERON:0001557;1.57e-17;9!UBERON:0005409;2.29e-15;22!UBERON:0000160;3.74e-12;17!UBERON:0004921;1.54e-09;33!UBERON:0000922;2.18e-09;49!UBERON:0001052;1.61e-08;4!UBERON:0000059;2.34e-08;11!UBERON:0004907;8.23e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.27e-17,9;UBERON:0005409,1.88e-13,25;UBERON:0000160,1.96e-12,17;UBERON:0004921,1.09e-11,118;UBERON:0001557,3.54e-11,19;UBERON:0001007,3.59e-11,145;UBERON:0001555,3.59e-11,145;UBERON:0007026,3.59e-11,145;UBERON:0004119,3.01e-09,160;UBERON:0000925,3.01e-09,160;UBERON:0006595,3.01e-09,160;UBERON:0001052,1.20e-08,4;UBERON:0000059,1.47e-08,11;UBERON:0011216,2.18e-08,223;UBERON:0004907,6.54e-07,5;UBERON:0008947,9.85e-07,38;UBERON:0003258,9.85e-07,38|phase1_expression=0,0,0,0,0,0,0,0,0,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0,0,0,0,0,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96468613246569,0.364295288292542,0.741568885568859,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,1.12135520028461,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121973706129595,0,0,0.310983165046111,0.504641701751257,0,0,0,0,0,0,2.72105640091641,2.19160097101532,1.20505514941741,2.53676137284506,2.39667388501647,1.18635309555548,1.75280700608214,2.74710051175484,1.53898862778556,0,0,0,0,0,0,0,0,1.96781501668982,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0,0,0,1.58040879591855,0.858486162094873,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02943027143257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69203229428271,0,0.0920809889358963,0,0,0,0,0.308061348417659,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,3.09123034943167,0.0915694648183434,0.165018999841176,0,0,0,0,0.308097234229289,0,0.413509717453592,0,0,1.02271952899321,1.4245125703478,0.165284915360978,0.192190067365106,0.382838137483752,0.708104465988849,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10674542563371,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=255743 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27405 | |||
|TSSclassifier=S | |||
|UniProt=Q6UXI9,E9PCQ1,E9PCK8,E9PF04,B4DIT4,B4DYK3,B4E2H7,B4E3H2,E9PE64 | |||
|association_with_transcript=0bp_to_ENST00000379987,ENST00000427316,ENST00000453617,ENST00000514622,NM_001033047,NM_001184690,NM_001184691,NM_001184692,NM_001184693_5end | |||
|coexpression_cluster_id=C2768 | |||
|description=CAGE_peak_3_at_NPNT_5end | |||
|id=chr4:106816592..106816603,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0008947;1.06e-09;29!UBERON:0006595;2.55e-07;86 | |||
|ontology_enrichment_disease=DOID:305!7.65e-14!106;DOID:0050687!2.73e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:299;2.01e-08;25 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.51e-09,106;DOID:299,1.98e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0007023!8.36e-33!115;UBERON:0004921!9.16e-16!129;UBERON:0004185!9.16e-16!129;UBERON:0001007!2.02e-15!155;UBERON:0001555!2.02e-15!155;UBERON:0007026!2.02e-15!155;UBERON:0004119!4.32e-15!169;UBERON:0000925!4.32e-15!169;UBERON:0006595!4.32e-15!169;UBERON:0000481!1.22e-14!347;UBERON:0003080!8.18e-12!42;UBERON:0001049!2.55e-11!57;UBERON:0005068!2.55e-11!57;UBERON:0006241!2.55e-11!57;UBERON:0007135!2.55e-11!57;UBERON:0000062!3.69e-11!511;UBERON:0002780!3.77e-11!41;UBERON:0001890!3.77e-11!41;UBERON:0006240!3.77e-11!41;UBERON:0000077!3.78e-11!130;UBERON:0005409!5.02e-10!35;UBERON:0000468!7.23e-10!659;UBERON:0002616!8.05e-10!59;UBERON:0001737!1.18e-09!9;UBERON:0002020!2.28e-09!34;UBERON:0003528!2.28e-09!34;UBERON:0000955!2.52e-09!69;UBERON:0006238!2.52e-09!69;UBERON:0001893!2.65e-09!34;UBERON:0001017!4.10e-09!82;UBERON:0000064!5.16e-09!219;UBERON:0000922!5.23e-09!612;UBERON:0003075!5.46e-09!86;UBERON:0007284!5.46e-09!86;UBERON:0002791!6.82e-09!33;UBERON:0005743!6.85e-09!86;UBERON:0002346!1.41e-08!90;UBERON:0003056!2.36e-08!61;UBERON:0001041!2.37e-08!98;UBERON:0001869!2.71e-08!32;UBERON:0000467!3.69e-08!625;UBERON:0001557!4.24e-08!19;UBERON:0000480!4.51e-08!626;UBERON:0000153!5.72e-08!129;UBERON:0007811!5.72e-08!129;UBERON:0000065!8.30e-08!53;UBERON:0000073!1.18e-07!94;UBERON:0001016!1.18e-07!94;UBERON:0002050!1.37e-07!605;UBERON:0005423!1.37e-07!605;UBERON:0000160!2.52e-07!27;UBERON:0000923!3.05e-07!604;UBERON:0005291!3.05e-07!604;UBERON:0006598!3.05e-07!604;UBERON:0002532!3.05e-07!604;UBERON:0001004!6.98e-07!72;UBERON:0002619!7.21e-07!22;UBERON:0000033!7.39e-07!123;UBERON:0001950!9.31e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.57e-17;9!UBERON:0001557;1.57e-17;9!UBERON:0005409;2.29e-15;22!UBERON:0000160;3.74e-12;17!UBERON:0004921;1.54e-09;33!UBERON:0000922;2.18e-09;49!UBERON:0001052;1.61e-08;4!UBERON:0000059;2.34e-08;11!UBERON:0004907;8.23e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,1.27e-17,9;UBERON:0005409,1.88e-13,25;UBERON:0000160,1.96e-12,17;UBERON:0004921,1.09e-11,118;UBERON:0001557,3.54e-11,19;UBERON:0001007,3.59e-11,145;UBERON:0001555,3.59e-11,145;UBERON:0007026,3.59e-11,145;UBERON:0004119,3.01e-09,160;UBERON:0000925,3.01e-09,160;UBERON:0006595,3.01e-09,160;UBERON:0001052,1.20e-08,4;UBERON:0000059,1.47e-08,11;UBERON:0011216,2.18e-08,223;UBERON:0004907,6.54e-07,5;UBERON:0008947,9.85e-07,38;UBERON:0003258,9.85e-07,38 | |||
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| |||
|short_description=p3@NPNT | |||
}} |
Revision as of 01:56, 13 September 2013
Short description: | p3@NPNT |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_NPNT_5end |
Coexpression cluster: | C2768_thyroid_throat_aorta_cervical_small_lung_mesothelioma |
Association with transcript: | 0bp_to_ENST00000379987, ENST00000427316, ENST00000453617, ENST00000514622, NM_001033047, NM_001184690, NM_001184691, NM_001184692, NM_001184693_5end |
EntrezGene: | NPNT |
HGNC: | 27405 |
UniProt: | Q6UXI9E9PCQ1E9PCK8E9PF04B4DIT4B4DYK3B4E2H7B4E3H2E9PE64 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
larynx | 1.27e-17 | 9 |
gastrointestinal system | 1.88e-13 | 25 |
intestine | 1.96e-12 | 17 |
subdivision of digestive tract | 1.09e-11 | 118 |
upper respiratory tract | 3.54e-11 | 19 |
digestive system | 3.59e-11 | 145 |
digestive tract | 3.59e-11 | 145 |
primitive gut | 3.59e-11 | 145 |
endoderm-derived structure | 3.01e-09 | 160 |
endoderm | 3.01e-09 | 160 |
presumptive endoderm | 3.01e-09 | 160 |
rectum | 1.20e-08 | 4 |
large intestine | 1.47e-08 | 11 |
organ system subdivision | 2.18e-08 | 223 |
lower digestive tract | 6.54e-07 | 5 |
respiratory primordium | 9.85e-07 | 38 |
endoderm of foregut | 9.85e-07 | 38 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.51e-09 | 106 |
adenocarcinoma | 1.98e-08 | 25 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.