FFCP PHASE1:Hg19::chr5:41213607..41213649,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=729|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1339|TSSclassifier=S|UniProt=P13671|association_with_transcript=0bp_to_ENST00000337836_5end|coexpression_cluster_id=C5|description=CAGE_peak_1_at_C6_5end|id=chr5:41213607..41213649,-|ontology_enrichment_celltype=CL:0000136!1.27e-15!15;CL:0000181!7.87e-10!12;CL:0000417!7.87e-10!12;CL:0000668!7.87e-10!12;CL:0000414!7.87e-10!12;CL:0000412!7.87e-10!12;CL:0000182!7.87e-10!12;CL:0002521!2.07e-07!3;CL:0002615!2.25e-07!3|ontology_enrichment_celltype_v019=CL:0000136;1.06e-23;13!CL:0002615;8.74e-13;3!CL:0002521;1.07e-12;3!CL:0002549;4.91e-09;2|ontology_enrichment_celltype_v019_2=CL:0000136,2.64e-20,15;CL:0002521,8.74e-13,3;CL:0002615,1.03e-12,3;CL:0002549,4.72e-09,2|ontology_enrichment_development_v019=UBERON:0005062;7.46e-10;4!UBERON:0007284;7.46e-10;4!UBERON:0003104;2.23e-07;31|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:114;1.34e-09;2|ontology_enrichment_disease_v019_2=DOID:114,1.34e-09,2|ontology_enrichment_uberon=UBERON:0007023!1.44e-35!115;UBERON:0002107!1.41e-13!19;UBERON:0006925!1.41e-13!19;UBERON:0008836!1.41e-13!19;UBERON:0009497!1.73e-11!25;UBERON:0000015!1.73e-11!25;UBERON:0002423!1.73e-11!25;UBERON:0006235!1.73e-11!25;UBERON:0004161!1.73e-11!25;UBERON:0008835!2.57e-11!22;UBERON:0003894!2.57e-11!22;UBERON:0005057!9.08e-11!26;UBERON:0009854!1.07e-10!23;UBERON:0007499!1.31e-09!25;UBERON:0009856!3.95e-09!26;UBERON:0002417!8.67e-09!61;UBERON:0000916!8.67e-09!61;UBERON:0009569!1.10e-08!113;UBERON:0002368!2.57e-08!35;UBERON:0004151!9.45e-08!3;UBERON:0002300!1.28e-07!3;UBERON:0003978!1.63e-07!3;UBERON:0009751!1.63e-07!3;UBERON:0000946!1.63e-07!3;UBERON:0002523!1.63e-07!3;UBERON:0005983!1.63e-07!3;UBERON:0002165!1.63e-07!3;UBERON:0002062!1.63e-07!3;UBERON:0007280!1.63e-07!3;UBERON:0002190!2.07e-07!3;UBERON:0000025!3.21e-07!194;UBERON:0002365!3.28e-07!31;UBERON:0002330!3.28e-07!31;UBERON:0000466!4.04e-07!126;UBERON:0005177!4.26e-07!107;UBERON:0005172!6.21e-07!55;UBERON:0005173!6.21e-07!55;UBERON:0000949!7.48e-07!45;UBERON:0001896!8.74e-07!3;UBERON:0005290!8.74e-07!3;UBERON:0010096!8.74e-07!3|ontology_enrichment_uberon_v019=UBERON:0004151;2.00e-13;3!UBERON:0003978;5.56e-13;3!UBERON:0000946;5.56e-13;3!UBERON:0002190;1.07e-12;3!UBERON:0002107;2.64e-10;19!UBERON:0006925;2.64e-10;19!UBERON:0002423;8.60e-10;25!UBERON:0007100;1.19e-09;25!UBERON:0002081;2.64e-09;2!UBERON:0002133;4.25e-09;2!UBERON:0005629;4.91e-09;2!UBERON:0005358;4.91e-09;2!UBERON:0001886;4.91e-09;2!UBERON:0004086;4.91e-09;2!UBERON:0005282;4.91e-09;2!UBERON:0005281;4.91e-09;2!UBERON:0002072;8.42e-08;5|ontology_enrichment_uberon_v019_2=UBERON:0004151,1.96e-13,3;UBERON:0003978,5.56e-13,3;UBERON:0009751,5.56e-13,3;UBERON:0000946,5.56e-13,3;UBERON:0002523,5.56e-13,3;UBERON:0005983,5.56e-13,3;UBERON:0002165,5.56e-13,3;UBERON:0002062,5.56e-13,3;UBERON:0007280,5.56e-13,3;UBERON:0002190,8.74e-13,3;UBERON:0007023,2.46e-12,114;UBERON:0002107,2.88e-10,19;UBERON:0006925,2.88e-10,19;UBERON:0008836,2.88e-10,19;UBERON:0009497,9.21e-10,25;UBERON:0000015,9.21e-10,25;UBERON:0002423,9.21e-10,25;UBERON:0006235,9.21e-10,25;UBERON:0004161,9.21e-10,25;UBERON:0002081,2.64e-09,2;UBERON:0010227,2.64e-09,2;UBERON:0002133,4.35e-09,2;UBERON:0002417,4.52e-09,60;UBERON:0000916,4.52e-09,60;UBERON:0005629,4.72e-09,2;UBERON:0005358,4.72e-09,2;UBERON:0001886,4.72e-09,2;UBERON:0004086,4.72e-09,2;UBERON:0005282,4.72e-09,2;UBERON:0005281,4.72e-09,2;UBERON:0007100,7.73e-09,27;UBERON:0008835,9.98e-09,22;UBERON:0003894,9.98e-09,22;UBERON:0009854,2.65e-08,23;UBERON:0009569,6.95e-08,112;UBERON:0002072,7.48e-08,5;UBERON:0007499,1.47e-07,25;UBERON:0009856,3.14e-07,26|phase1_expression=0.726713517082227,10.9191267184401,1.83240725324762,1.0007329835313,11.1740273606822,0,2.53299878168311,1.89515962028049,3.65659879479774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.16115474571226,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66493170409425,4.03323147135999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,708.560644654034,350.869316353912,334.977877088356,0,0.122988438543114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.28680194292333,0,0,0,0.710783897485092,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0.391602314925481,0.343143423810856,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,212.573607029251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31178950409327,0,0,0,0,0,0,0,0,0,0,0,0,0,0,208.340231119012,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=729 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1339 | |||
|TSSclassifier=S | |||
|UniProt=P13671 | |||
|association_with_transcript=0bp_to_ENST00000337836_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_1_at_C6_5end | |||
|id=chr5:41213607..41213649,- | |||
|ontology_enrichment_celltype=CL:0000136!1.27e-15!15;CL:0000181!7.87e-10!12;CL:0000417!7.87e-10!12;CL:0000668!7.87e-10!12;CL:0000414!7.87e-10!12;CL:0000412!7.87e-10!12;CL:0000182!7.87e-10!12;CL:0002521!2.07e-07!3;CL:0002615!2.25e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000136;1.06e-23;13!CL:0002615;8.74e-13;3!CL:0002521;1.07e-12;3!CL:0002549;4.91e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,2.64e-20,15;CL:0002521,8.74e-13,3;CL:0002615,1.03e-12,3;CL:0002549,4.72e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0005062;7.46e-10;4!UBERON:0007284;7.46e-10;4!UBERON:0003104;2.23e-07;31 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;1.34e-09;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,1.34e-09,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.44e-35!115;UBERON:0002107!1.41e-13!19;UBERON:0006925!1.41e-13!19;UBERON:0008836!1.41e-13!19;UBERON:0009497!1.73e-11!25;UBERON:0000015!1.73e-11!25;UBERON:0002423!1.73e-11!25;UBERON:0006235!1.73e-11!25;UBERON:0004161!1.73e-11!25;UBERON:0008835!2.57e-11!22;UBERON:0003894!2.57e-11!22;UBERON:0005057!9.08e-11!26;UBERON:0009854!1.07e-10!23;UBERON:0007499!1.31e-09!25;UBERON:0009856!3.95e-09!26;UBERON:0002417!8.67e-09!61;UBERON:0000916!8.67e-09!61;UBERON:0009569!1.10e-08!113;UBERON:0002368!2.57e-08!35;UBERON:0004151!9.45e-08!3;UBERON:0002300!1.28e-07!3;UBERON:0003978!1.63e-07!3;UBERON:0009751!1.63e-07!3;UBERON:0000946!1.63e-07!3;UBERON:0002523!1.63e-07!3;UBERON:0005983!1.63e-07!3;UBERON:0002165!1.63e-07!3;UBERON:0002062!1.63e-07!3;UBERON:0007280!1.63e-07!3;UBERON:0002190!2.07e-07!3;UBERON:0000025!3.21e-07!194;UBERON:0002365!3.28e-07!31;UBERON:0002330!3.28e-07!31;UBERON:0000466!4.04e-07!126;UBERON:0005177!4.26e-07!107;UBERON:0005172!6.21e-07!55;UBERON:0005173!6.21e-07!55;UBERON:0000949!7.48e-07!45;UBERON:0001896!8.74e-07!3;UBERON:0005290!8.74e-07!3;UBERON:0010096!8.74e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0004151;2.00e-13;3!UBERON:0003978;5.56e-13;3!UBERON:0000946;5.56e-13;3!UBERON:0002190;1.07e-12;3!UBERON:0002107;2.64e-10;19!UBERON:0006925;2.64e-10;19!UBERON:0002423;8.60e-10;25!UBERON:0007100;1.19e-09;25!UBERON:0002081;2.64e-09;2!UBERON:0002133;4.25e-09;2!UBERON:0005629;4.91e-09;2!UBERON:0005358;4.91e-09;2!UBERON:0001886;4.91e-09;2!UBERON:0004086;4.91e-09;2!UBERON:0005282;4.91e-09;2!UBERON:0005281;4.91e-09;2!UBERON:0002072;8.42e-08;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004151,1.96e-13,3;UBERON:0003978,5.56e-13,3;UBERON:0009751,5.56e-13,3;UBERON:0000946,5.56e-13,3;UBERON:0002523,5.56e-13,3;UBERON:0005983,5.56e-13,3;UBERON:0002165,5.56e-13,3;UBERON:0002062,5.56e-13,3;UBERON:0007280,5.56e-13,3;UBERON:0002190,8.74e-13,3;UBERON:0007023,2.46e-12,114;UBERON:0002107,2.88e-10,19;UBERON:0006925,2.88e-10,19;UBERON:0008836,2.88e-10,19;UBERON:0009497,9.21e-10,25;UBERON:0000015,9.21e-10,25;UBERON:0002423,9.21e-10,25;UBERON:0006235,9.21e-10,25;UBERON:0004161,9.21e-10,25;UBERON:0002081,2.64e-09,2;UBERON:0010227,2.64e-09,2;UBERON:0002133,4.35e-09,2;UBERON:0002417,4.52e-09,60;UBERON:0000916,4.52e-09,60;UBERON:0005629,4.72e-09,2;UBERON:0005358,4.72e-09,2;UBERON:0001886,4.72e-09,2;UBERON:0004086,4.72e-09,2;UBERON:0005282,4.72e-09,2;UBERON:0005281,4.72e-09,2;UBERON:0007100,7.73e-09,27;UBERON:0008835,9.98e-09,22;UBERON:0003894,9.98e-09,22;UBERON:0009854,2.65e-08,23;UBERON:0009569,6.95e-08,112;UBERON:0002072,7.48e-08,5;UBERON:0007499,1.47e-07,25;UBERON:0009856,3.14e-07,26 | |||
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|short_description=p1@C6 | |||
}} |
Revision as of 15:40, 13 September 2013
Short description: | p1@C6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_C6_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000337836_5end |
EntrezGene: | C6 |
HGNC: | 1339 |
UniProt: | P13671 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 2.64e-20 | 15 |
subcutaneous fat cell | 8.74e-13 | 3 |
adipocyte of omentum tissue | 1.03e-12 | 3 |
fibroblast of choroid plexus | 4.72e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
heart disease | 1.34e-09 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.