FFCP PHASE1:Hg19::chr7:5569450..5569455,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=60|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=132|TSSclassifier=S|UniProt=|association_with_transcript=-126bp_to_uc003sos.3_5end|description=CAGE_peak_28_at_ACTB_5end|id=chr7:5569450..5569455,-|ontology_enrichment_celltype=CL:0000548!1.20e-11!679;CL:0000004!1.20e-11!679;CL:0000255!1.20e-11!679;CL:0000012!3.97e-11!682;CL:0000222!1.10e-10!119;CL:0000055!1.40e-09!180;CL:0000003!1.21e-07!722;CL:0000144!3.65e-07!625;CL:0002371!3.99e-07!591;CL:0000183!4.57e-07!59|ontology_enrichment_celltype_v019=CL:1000746;1.41e-17;7!CL:1000612;1.41e-17;7!CL:1000449;2.47e-11;15!CL:0000650;9.47e-11;2!CL:1000500;9.47e-11;2!CL:1000618;9.47e-11;2!CL:1001318;9.47e-11;2!CL:0002173;9.47e-11;2!CL:0002681;3.74e-10;12!CL:0002584;3.74e-10;12!CL:1000497;6.25e-10;17!CL:0002518;6.25e-10;17!CL:0002188;1.31e-09;5|ontology_enrichment_celltype_v019_2=CL:1000746,8.29e-17,7;CL:1000612,8.29e-17,7;CL:1000449,5.33e-11,15;CL:0000650,3.56e-10,2;CL:1000500,3.56e-10,2;CL:1000618,3.56e-10,2;CL:1001318,3.56e-10,2;CL:0002173,3.56e-10,2;CL:0002681,1.01e-09,12;CL:0002584,1.01e-09,12;CL:1000497,1.22e-09,17;CL:0002518,1.22e-09,17;CL:0002188,2.66e-09,5;CL:0000222,4.10e-08,121;CL:0000359,7.12e-07,32|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000490!3.01e-07!138|ontology_enrichment_uberon_v019=UBERON:0000074;1.41e-17;7!UBERON:0001229;1.41e-17;7!UBERON:0006555;2.47e-11;15!UBERON:0000353;2.47e-11;15!UBERON:0004819;2.47e-11;15!UBERON:0001285;2.47e-11;15!UBERON:0007684;2.47e-11;15!UBERON:0003567;9.47e-11;2!UBERON:0003838;9.47e-11;2!UBERON:0003586;9.47e-11;2!UBERON:0005169;9.47e-11;2!UBERON:0002321;9.47e-11;2!UBERON:0005215;9.47e-11;2!UBERON:0002303;9.47e-11;2!UBERON:0002319;9.47e-11;2!UBERON:0001225;3.74e-10;12!UBERON:0008987;3.74e-10;12!UBERON:0001851;4.56e-08;15!UBERON:0006554;3.65e-07;30!UBERON:0001008;3.65e-07;30!UBERON:0002113;7.39e-07;24!UBERON:0011143;7.39e-07;24|ontology_enrichment_uberon_v019_2=UBERON:0010532,8.29e-17,7;UBERON:0000074,8.29e-17,7;UBERON:0001229,8.29e-17,7;UBERON:0001230,8.29e-17,7;UBERON:0003220,8.29e-17,7;UBERON:0005749,8.29e-17,7;UBERON:0004199,8.29e-17,7;UBERON:0004209,8.29e-17,7;UBERON:0004198,8.29e-17,7;UBERON:0005103,1.10e-14,8;UBERON:0000083,1.10e-14,8;UBERON:0009201,1.10e-14,8;UBERON:0006553,1.10e-14,8;UBERON:0003074,1.10e-14,8;UBERON:0003060,1.10e-14,8;UBERON:0000080,4.95e-13,9;UBERON:0002120,4.95e-13,9;UBERON:0004875,4.95e-13,9;UBERON:0005721,4.95e-13,9;UBERON:0005754,4.95e-13,9;UBERON:0007297,4.95e-13,9;UBERON:0004211,5.33e-11,15;UBERON:0009773,5.33e-11,15;UBERON:0001231,5.33e-11,15;UBERON:0001285,5.33e-11,15;UBERON:0007684,5.33e-11,15;UBERON:0004208,5.33e-11,15;UBERON:0000353,5.85e-11,15;UBERON:0004876,1.26e-10,11;UBERON:0006555,2.82e-10,16;UBERON:0004819,2.82e-10,16;UBERON:0003567,3.56e-10,2;UBERON:0003838,3.56e-10,2;UBERON:0003586,3.56e-10,2;UBERON:0005169,3.56e-10,2;UBERON:0002321,3.56e-10,2;UBERON:0005215,3.56e-10,2;UBERON:0002303,3.56e-10,2;UBERON:0002319,3.56e-10,2;UBERON:0001225,1.01e-09,12;UBERON:0008987,1.01e-09,12;UBERON:0003887,1.01e-09,12;UBERON:0003914,1.21e-09,117;UBERON:0007503,2.20e-09,78;UBERON:0000058,1.56e-08,19;UBERON:0001851,9.96e-08,15;UBERON:0003081,1.14e-07,203|phase1_expression=0.726713517082227,0.428201047781966,0.422863212287913,0,0,0,0,0,0,0.737201809504527,2.09340350391728,0.218441372130172,1.05506791291381,0,0,0,0,0,0.975865597581014,0.738726348460727,0,0.313454721478088,0,0,0.376627918784408,0.152826811495903,0.0821005894499457,0.314843125254717,0,0.767658796194425,0.154816123316076,0.919421224478927,1.8072355126695,0,0.0774672005803016,0,0,0.553995408531877,0.200544447470142,0,0,0,0,0.290796477559129,0,0.242584061187816,0,0,0,0,0.256160706529101,0.236482229888585,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.212604299965044,0,0,0,0,0.285012743741249,0.39783335439818,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0.270803863765016,0.384273959177026,0.130059347559878,0,0,0,0,0,0,0.566546713487831,0,0,0,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0,0,0,0,0.12786256184353,0,0.50133791063589,0.289693037921647,0,0,0,0.221729397462564,0.263504357079378,0.261958150995425,0,0,0.324547393654683,0.522389211897802,0.531831842075461,0,0,0,0.39752481473341,0.860234595106124,0.347140501607594,0.56530794192401,0.838998872419812,0.550236083880135,0.835979866147242,0.775250277507987,0.35576626268671,0,0.402829317109147,1.52054421143703,0.24406205754817,0.367663080345869,0,0.267899184852239,0,0.112611480483322,0,2.84779697870439,0.183201743930407,0,0,0,0.496971951695318,0.506522046658319,0.529636723252875,0,0,0.560677600142307,2.1349799145941,0.49333509683432,1.24484414159907,0.404132016209064,0.490385709340376,0.756787138224657,0,0,0,0,0.149448680551801,0.117434498643765,0.161872944368132,0,0.408308342509787,0.245668634623536,0.103325781175765,0,0.74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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=60 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=132 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=-126bp_to_uc003sos.3_5end | |||
|description=CAGE_peak_28_at_ACTB_5end | |||
|id=chr7:5569450..5569455,- | |||
|ontology_enrichment_celltype=CL:0000548!1.20e-11!679;CL:0000004!1.20e-11!679;CL:0000255!1.20e-11!679;CL:0000012!3.97e-11!682;CL:0000222!1.10e-10!119;CL:0000055!1.40e-09!180;CL:0000003!1.21e-07!722;CL:0000144!3.65e-07!625;CL:0002371!3.99e-07!591;CL:0000183!4.57e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:1000746;1.41e-17;7!CL:1000612;1.41e-17;7!CL:1000449;2.47e-11;15!CL:0000650;9.47e-11;2!CL:1000500;9.47e-11;2!CL:1000618;9.47e-11;2!CL:1001318;9.47e-11;2!CL:0002173;9.47e-11;2!CL:0002681;3.74e-10;12!CL:0002584;3.74e-10;12!CL:1000497;6.25e-10;17!CL:0002518;6.25e-10;17!CL:0002188;1.31e-09;5 | |||
|ontology_enrichment_celltype_v019_2=CL:1000746,8.29e-17,7;CL:1000612,8.29e-17,7;CL:1000449,5.33e-11,15;CL:0000650,3.56e-10,2;CL:1000500,3.56e-10,2;CL:1000618,3.56e-10,2;CL:1001318,3.56e-10,2;CL:0002173,3.56e-10,2;CL:0002681,1.01e-09,12;CL:0002584,1.01e-09,12;CL:1000497,1.22e-09,17;CL:0002518,1.22e-09,17;CL:0002188,2.66e-09,5;CL:0000222,4.10e-08,121;CL:0000359,7.12e-07,32 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000490!3.01e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;1.41e-17;7!UBERON:0001229;1.41e-17;7!UBERON:0006555;2.47e-11;15!UBERON:0000353;2.47e-11;15!UBERON:0004819;2.47e-11;15!UBERON:0001285;2.47e-11;15!UBERON:0007684;2.47e-11;15!UBERON:0003567;9.47e-11;2!UBERON:0003838;9.47e-11;2!UBERON:0003586;9.47e-11;2!UBERON:0005169;9.47e-11;2!UBERON:0002321;9.47e-11;2!UBERON:0005215;9.47e-11;2!UBERON:0002303;9.47e-11;2!UBERON:0002319;9.47e-11;2!UBERON:0001225;3.74e-10;12!UBERON:0008987;3.74e-10;12!UBERON:0001851;4.56e-08;15!UBERON:0006554;3.65e-07;30!UBERON:0001008;3.65e-07;30!UBERON:0002113;7.39e-07;24!UBERON:0011143;7.39e-07;24 | |||
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| |||
|short_description=p28@ACTB | |||
}} |
Revision as of 01:39, 14 September 2013
Short description: | p28@ACTB |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_28_at_ACTB_5end |
Coexpression cluster: | NA |
Association with transcript: | -126bp_to_uc003sos.3_5end |
EntrezGene: | ACTB |
HGNC: | 132 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular cell | 8.29e-17 | 7 |
kidney corpuscule cell | 8.29e-17 | 7 |
epithelial cell of nephron | 5.33e-11 | 15 |
mesangial cell | 3.56e-10 | 2 |
kidney interstitial cell | 3.56e-10 | 2 |
juxtaglomerular complex cell | 3.56e-10 | 2 |
renal interstitial pericyte | 3.56e-10 | 2 |
extraglomerular mesangial cell | 3.56e-10 | 2 |
kidney cortical cell | 1.01e-09 | 12 |
renal cortical epithelial cell | 1.01e-09 | 12 |
kidney cell | 1.22e-09 | 17 |
kidney epithelial cell | 1.22e-09 | 17 |
glomerular endothelial cell | 2.66e-09 | 5 |
mesodermal cell | 4.10e-08 | 121 |
vascular associated smooth muscle cell | 7.12e-07 | 32 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.