FFCP PHASE1:Hg19::chr12:46662478..46662504,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81539 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13447 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=84bp_to_ENST00000551506_5end | |||
|coexpression_cluster_id=C3280 | |||
|description=CAGE_peak_6_at_SLC38A1_5end | |||
|id=chr12:46662478..46662504,- | |||
|ontology_enrichment_celltype=CL:0000066!2.20e-27!254;CL:0000548!3.82e-14!679;CL:0000004!3.82e-14!679;CL:0000255!3.82e-14!679;CL:0000012!2.43e-13!682;CL:0000063!7.84e-13!578;CL:0002076!1.19e-09!43;CL:0000223!2.80e-09!59;CL:0000003!2.15e-08!722;CL:0000076!8.97e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.45e-08;42!CL:0002251;4.72e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.98e-28,253;CL:0002076,1.90e-10,42;CL:0000223,5.16e-10,58;CL:0002251,4.25e-07,20 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!1.27e-33!235;DOID:14566!1.67e-33!239;DOID:305!1.17e-24!106;DOID:0050687!2.64e-24!143;DOID:0050686!1.92e-15!137 | |||
|ontology_enrichment_disease_v019=DOID:305;3.86e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:162,2.90e-34,235;DOID:14566,3.83e-34,239;DOID:305,4.35e-25,106;DOID:0050687,1.23e-24,143;DOID:0050686,9.08e-16,137 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.72e-10!169;UBERON:0000925!1.72e-10!169;UBERON:0006595!1.72e-10!169;UBERON:0001007!8.25e-09!155;UBERON:0001555!8.25e-09!155;UBERON:0007026!8.25e-09!155;UBERON:0001004!1.64e-07!72;UBERON:0000077!2.53e-07!130 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,4.64e-09,160;UBERON:0000925,4.64e-09,160;UBERON:0006595,4.64e-09,160;UBERON:0001004,1.28e-07,74;UBERON:0001007,2.85e-07,145;UBERON:0001555,2.85e-07,145;UBERON:0007026,2.85e-07,145 | |||
|phase1_expression=5.99538651592837,6.63711624062048,5.3562673556469,2.00146596706261,0.893922188854576,1.74467704820074,0,0.631719873426831,0,2.94880723801811,1.39560233594486,6.99012390816551,2.11013582582763,0.618831764800233,0.662794751455832,1.34465029290355,0.602694528023977,0,0.975865597581014,1.10808952269109,0.408001382488506,1.56727360739044,0.286235987131057,1.50561867580173,1.25542639594803,10.0101561529816,9.60576896564365,9.20916141370047,0.786728553697808,2.68680578668049,1.08371286321253,1.83884244895785,4.819294700452,6.65557218300218,5.65510564236202,9.09883087919498,1.46800219667424,0.553995408531877,0.802177789880567,0.434021741431704,0,0,0.257575567634187,0.726991193897824,1.13362783106643,0.242584061187816,2.09186133215116,4.11167888021826,2.78735733805593,2.3015391385772,2.81776777182011,0.945928919554341,1.03423704220986,1.93645405075148,1.35426486594342,0.941211697713023,2.18324920046277,0.898893937780338,0.918251677112708,1.28371610830437,1.27867425159808,0.329851300186716,1.79517291859469,1.27867425159808,1.7412554317715,1.70215567407342,0,1.7587406567972,1.5644487552606,1.08594422352558,0.605399502633369,2.57794345191295,0.632924774881769,0,0,0,0,0,0,0,0,0,0,2.18455444504853,1.77901850772711,3.84057200309856,0.800791974072025,1.72425731986345,0.661044872784862,1.90810750907073,2.84606484554724,1.17447437874188,3.05818582500183,0,0.560508562981536,0.790152254325231,1.180258620683,0.786021525498329,2.67281948699362,2.84217042164153,0.651844533267181,0.473447805734733,0,3.67654507721073,1.76763544484902,1.32920336750173,2.70803863765016,1.79327847615945,2.08094956095805,1.64437904603676,1.93445012450094,4.34704628602579,1.77943875794473,1.60524496853828,0,3.96582699441482,4.21542542962113,1.03088233644789,1.26509846009751,0.95569624297229,1.95325036156926,3.8018081777935,2.25862678616659,2.68771883424279,4.99722906209383,1.4206635122641,2.46338399076314,2.82249440514625,3.4767225451856,2.31719046212478,0,0.670700859703636,7.28816602508123,0.361439152384566,3.00802746381534,0.869079113764942,0.795285947051099,1.45990461090791,3.40325341790644,1.10864698731282,2.98638271356629,0.392937226493138,1.09288586487763,1.85392221392215,0,0,0,0.238490624305342,0,0,10.9319324051688,0.860234595106124,0.694281003215189,0.56530794192401,5.45349267072878,7.42818713238182,2.29894463190492,6.20200222006389,5.33649394030065,7.69857409358742,9.66790361061953,4.56163263431108,2.68468263302986,5.14728312484216,0,2.23249320710199,1.57170560838319,6.64407734851601,3.06633274931766,2.84779697870439,1.64881569537367,0,0,3.05265836499774,7.9515512271251,13.0429427014517,5.95841313659485,16.92336062418,4.965357350777,2.80338800071154,6.4049397437823,4.19334832309172,1.8672662123986,7.00495494762378,3.10577615915572,1.21085942115945,2.30470369792,4.68642863667593,4.37024107562449,3.99330275081114,6.27684458317565,3.87533845524424,2.5899671098901,0.98315564691574,6.73708765141148,3.4393608847295,11.46916171051,2.37600571456411,4.69807165629258,0.910161361938026,2.87447256726495,6.56510844420858,5.50521487436642,6.92660288710457,1.75591048352335,1.22595118319608,1.50238058906597,7.82682063804145,1.25572744982203,0.640672166455702,3.81477422087211,2.10063767259082,1.13357782162283,9.79034052173391,5.02515512095292,6.24472429292685,2.53336213419116,3.5340728394176,4.14224543890347,0.80823028409406,3.90510551768276,0.806016785821122,3.22165125389926,9.85630351132814,16.3647672354501,12.9062067925052,3.17131635936948,2.65059536642971,3.48581828608555,3.52447587052259,2.77552935963191,3.6497735907583,0,0,0,0,0,9.58285080322736,8.09206512374888,6.7483088367375,9.81616357318306,8.71517776369625,9.49082476444386,7.41572194880904,9.22240886089127,4.61696588335668,0.738155454624648,1.40241773803446,0.4115740113314,2.94017422771084,0,0,2.95394953340702,1.32438929824395,5.65746817298322,7.03428022223955,11.6335302533143,6.74410519545717,11.2592449101027,6.85154494173119,3.58389135841357,0,1.44331342025273,1.39116485970092,9.51010423310155,5.4859250149208,2.31492756288305,8.75169100279152,3.1608175918371,6.86788929675898,0,0,0,11.2480600784132,5.87937448696008,9.35715641799751,22.4791891984149,15.6942326797539,7.66765358330422,0.492663237895943,0,0.414656231081544,0.144119953416961,0,0,0,0,0,0,0,0,4.37311228946907,1.74384027533312,6.6004457238855,7.88557466122444,7.15312891703765,1.690605505112,7.44626726437637,8.32059495290929,1.80045161983499,4.25547396069835,1.3321108950805,6.71996570193294,0,0.823240336780769,0.65147236858747,6.75244702610837,3.16780749173372,3.31583314765545,2.61460037580088,2.19940580600526,0,0,0,9.10574450868014,10.3375742250703,2.85273810081437,4.92256442669769,1.43833425785268,5.55088986043676,18.494048758932,3.94061520403854,3.01878604803324,3.46526197955321,0.254094624222463,0,2.31986643833309,0.502548796003046,0.637938751653163,0,0,1.24324654030811,2.33113834266366,1.00034104211935,2.98391526069709,11.854339107256,19.805617756485,16.874158408631,6.44277782459923,1.50473049863859,9.09630016223939,6.2083842775503,1.32845119707087,0.921845842708516,1.04260337361699,0.195801157462741,0,1.6541442089831,1.94142780736755,1.81436848265855,1.5156378572313,1.66435439510497,7.55975733324201,8.93188108147597,22.2519861267691,4.77122160536225,5.76626171650654,13.3043884757343,3.69964018630297,0,0,0.177561725313127,0.164254312027618,0,0.116210378459959,7.25156697549733,6.21570057940183,12.430933506346,5.39627906373652,15.6598404485777,2.09799063935079,4.06079651616671,7.39347236202382,0.784349769176855,0,4.43316841350078,1.13733384070897,3.57196781080683,2.37507507712353,0,1.62567862526312,1.50506932156456,6.37190682612596,4.98645605357235,3.58199607555485,0.219259876645935,0,1.28225062558195,0.656029291399411,14.6420277598936,2.36994326789761,5.21945949464557,5.28060799491763,7.46545199395024,5.85054221432869,6.42735719376638,15.5639856450316,3.85121542786611,4.29810289233163,1.92971201478343,6.01553371262332,0.870100163485371,4.09087811597284,8.27997931514657,26.9414412038394,22.1018577469872,9.82617886208298,15.3759826900436,0.464845549297286,4.7221852024596,0.6970372701606,6.46870518369786,0.532306030317022,1.73986598415015,2.40921484835096,6.15437012990562,1.48863347743867,2.84741482246853,2.47819252100972,1.535386747868,7.70290178461057,0.636406495851874,2.35484592059769,3.77732160924961,3.0199073270966,5.53718291024726,1.2130948894399,3.17020642346017,1.26377536871694,0.975267478179181,0.487426979262569,1.05650146756755,1.63799893689583,2.96951407102797,0,1.65409603063837,1.99031692572366,1.31535265576129,1.15755106853338,2.62357900818653,1.62328301570163,3.40805847909725,1.97186921772569,5.73645408816206,5.50194629673478,1.426684205925,3.19284957663538,1.68886108238131,0,1.89736586882858,6.64875968465468,9.42976704710018,4.02181365321472,7.62236894029258,3.57746442951761,2.58303223602738,5.05414427002877,0.443430153536676,9.87810620889926,1.01489521846434,2.29391162142713,2.27858874869665,1.42939065274673,2.87953591160336,1.29694662238543,0,1.58625035258854,3.84566656058903,10.5872784078969,5.3908847515827,5.57409525377156,2.8853842595289,0,2.71024663638998,11.974762285969,4.78763425330917,66.4655049752992,4.22008522356922,5.33514638415572,0.456469358066384,5.95383603937488,2.50634477090067,12.8661751129218,1.4452926759333,0.80719882876419,0.425846237690326,5.49608551609224,11.3679082794129,5.81557880520281,10.0109485027145,2.73543333562856,11.4146531297049,2.46174797895425,1.08182271390393,2.66457574398256,0,2.99424864653152,0.439524537815682,2.79129200023881,6.12938613526131,4.54617834890261,5.49112314896687,5.3453642549875,7.6790175524808,0,0.562677665642051,7.5689919415576,6.75695884329714,0.211125408127993,1.19548792950642,1.10513566212459,0,5.11343412510774,5.78498585667027,2.79935628895627,27.0503736953454,21.3035197863975,0.511572370226872,1.7755813014648,0,1.11136990144637,0,0.371072392647405,0,21.3550764089891,4.54791999980218,2.17499872630438,18.3207451739654,2.79679015322043,19.6201775867387,3.10269035917318,1.45802306691627,12.3273746402638,0.885741385813839,0,4.5774520895125,1.3269511191747,2.36438095162838,0.219385397153973,14.7066925750637,11.4327470308455,0.615602068030377,7.97594390929008,9.91424788868659,15.5280724828906,20.3170585494155,9.57003479195758,6.22863635132664,9.06159119231679,0,4.55242743545572,0,4.73750887296079,8.62675150998054,8.22325776181629,10.4364552998302,2.54298526368606,8.86191871017714,13.7115558853684,12.015011071885,7.14082511148901,0,1.14994833854341,0.611030144933625,32.0242818975072,38.0576931955229,28.6116141644948,1.01101699471016,0.802577647298789,1.40558667435203,7.11573677941097,16.8271572281597,7.52619176555688,3.94584402849391,1.20990716048664,0,3.22251556105289,6.31358361540869,2.28114021073944,6.64653872707185,19.8595173525299,12.8712496546962,5.97362148864794,19.3534491300259,25.2387904883912,4.33899345837827,8.52533857505085,6.52944049353019,1.22308667769421,0,10.9334654356666,13.5946129780305,11.4961639874493,1.45483524732629,2.91245218081951,0.451961481561065,7.94843162951155,5.96143835108969,0.633107959558787,5.67099009930929,3.44682927081595,1.06726497369676,8.99143243119586,11.6713237894826,11.7972694050893,9.95250987599394,22.4725484861514,8.57342495401485,11.549007696223,3.26170094576674,3.13808538937,7.54786810508781,27.1613554507428,0,0,2.55493176133945,9.45483971123906,7.88662062837944,0,1.3749625440701,0,8.18683902045863,3.004582336956,1.56220020209311,1.34366944973453,5.76479813667846,5.82479747637269,5.19969003227676,4.20320877743949,5.52709059604316,14.0751298566091,11.3462264968151,0.795229689809303,0.136203406111576,3.85807556316046,2.75078873194468,2.07720169014593,12.148590143781,6.96421759102155,0.546746009922222,4.02521625119119,1.02447419488958,1.04909176269996,14.6784467761975,10.7572403599707,16.1208765748334,5.00286728461357,1.98627591109629,7.37378759198775,1.08599920350743,2.5926644736038,1.63293680054705,1.19730191562487,13.5452659236409,0.170388021785422,3.05942647104339,0.58620893471233,1.32506888912221,1.93924434542326,0.66116300871345,19.1617258430449,0,0.533937062838473,0.943225830597996,0.414239055347196,2.97699613087171,5.3355140612445,4.26274094333136,18.5118964753353,0,0,0,0,11.7790572187676,1.77213635993397,0.732157589411779,0.250381861413,1.14681839138014,0.554645257684261,2.17337410294842,2.35192679391592,7.4988244777264,5.30771911395767,1.99825733481477,5.17584803335978,2.81000943484129,3.04334160082733,0.597019211547496,8.64739246434731,0,0.189403005275089,0.251567901752575,0,4.57680136793847,4.53692771289717,1.39893480524502,0.73927574994817,3.98241917909256,9.8956684675993,2.01841843939137,2.90294345488599,1.32920857278997,6.26094074174081,1.20206087197775,1.90402606084398,3.25496586563729,0.181848659202559,7.84097066410166,2.32016879939247,2.78667122089031,2.00013882331577,6.18112269329027,9.42898568544573,1.26184898228651,6.54907423384831,4.71771501024837,19.3135776054257,7.25458961639272,3.24131464053368,16.1526224974269,5.37266523244462,3.08801447160972,7.89422578483346,6.71418754594348,9.45278787527482,12.3327981676743,12.5558344108094,4.14516410077438,7.59649890443455,0,5.0663680298241,6.1117826544147,3.76200406788442,5.56936743038901,1.72041036127604,8.45248493434508,3.39978572953381,1.70706767510625,30.1376214406427,4.54012762853469,1.10463570151104,20.4224081270389,21.1506268411211,21.6141487503171,7.87121123195777,1.10086159299127,4.58680480406458,0.509197589862076,0,0.743614585554013,0.558644917973244,2.54403480522735,9.38454765514915,11.2079904759966,3.17408349321616,4.8999276376512,0.449604575675217,1.41696576325585,0,1.02558182120378,0.756215088665154,1.24483054435592,0.322951291263702,0,6.87034029507179,4.48284948721413,7.33714394086716,18.8306835825051,2.66967466827017,11.7361187430217,3.77940822020922,2.18109952212846,1.61364054962816,5.47059807863165,6.02385397307272,7.20596437044426,9.61064560410794,1.41828927698629,0,0.413373593002368,0.570742291745161,1.09394961803644,1.09651553371436,1.48863353516788,0.879356221798103,17.7589774419037,2.67850917939143,0.672567444437648,1.82089681270989,2.27662191351298,8.87023701626388,4.95506146489851,1.54339208493677,3.12660771693426,0.328863867814245,7.20982429392206,11.5680657967752,0.941917114206168,0.314231179832004,15.6952411455722,0,6.0459725541214,2.8665101273223,1.07214816264985,3.16027223465453,10.229245432395,12.1700790611806,1.60342272946051,13.4690506705974,4.4386804044427,2.76503864725637,0.430227358820278,6.50826004018109,6.90228578549177,15.6653208570644,6.4149923192334,2.17144469965024,0.955538938977433,5.59277158988962,31.0154738224168,9.50959814861701,3.88457302312737,1.43727929598746,0,0.485710993059139,7.48606283078738,6.56537558032515,3.68652281410463,40.5476434519866,7.47595513868918,17.0588013230341,0.848915739187391,0.874238242015829,7.05475944542284,0.490296643507811,32.759040047126,2.1593931382644,0.891139200981258,1.2679671827502,7.47679304626394,1.12780701575824,1.28915775947154,9.99411559249289,18.0339477991714,12.7042153817649,8.02413666891682,1.46067277649303,1.37618785021362,0.143339583151451,2.83988811947732,0.475940431336403,0.436350690340377,3.1741610430924,0,0.462175628631418,0,4.54199129406284,1.52971800749174,0.253397002022874,12.3406483987798,13.6280876685436,13.7842349302267,8.77476387523313,0.682008283964155,0,2.48750831837634,0.103432995861895,1.0661699095049,0.714193294391221,1.0334225573761,1.42771842880473,11.325318120642,2.03670906490128,2.42540626749863,1.52401723527873,1.36893320434112,2.1552656964668,2.07994395638761,0.665320713092027,6.43085822026699,13.2341908888367,0,7.63514217905989,4.69281884806909,0.611207220914332,0.406896178315738,0,1.81146414231924,3.20568492303233 | |||
|short_description=p6@SLC38A1 | |||
}} |
Revision as of 13:07, 11 January 2014
Short description: | p6@SLC38A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SLC38A1_5end |
Coexpression cluster: | C3280_acute_somatostatinoma_neuroblastoma_small_choriocarcinoma_bile_signet |
Association with transcript: | 84bp_to_ENST00000551506_5end |
EntrezGene: | SLC38A1 |
HGNC: | 13447 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.98e-28 | 253 |
endo-epithelial cell | 1.90e-10 | 42 |
endodermal cell | 5.16e-10 | 58 |
epithelial cell of alimentary canal | 4.25e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 4.64e-09 | 160 |
endoderm | 4.64e-09 | 160 |
presumptive endoderm | 4.64e-09 | 160 |
respiratory system | 1.28e-07 | 74 |
digestive system | 2.85e-07 | 145 |
digestive tract | 2.85e-07 | 145 |
primitive gut | 2.85e-07 | 145 |
Ontology term | p-value | n |
---|---|---|
cancer | 2.90e-34 | 235 |
disease of cellular proliferation | 3.83e-34 | 239 |
carcinoma | 4.35e-25 | 106 |
cell type cancer | 1.23e-24 | 143 |
organ system cancer | 9.08e-16 | 137 |