FFCP PHASE1:Hg19::chr19:42784727..42784766,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=strong | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr19:42784727..42784766,+ | |||
|id=chr19:42784727..42784766,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1000746;5.82e-08;7!CL:1000612;5.82e-08;7!CL:1000449;6.23e-08;15!CL:1000497;7.07e-08;17!CL:0002518;7.07e-08;17!CL:0000945;9.28e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,6.27e-08,15;CL:1000497,7.62e-08,17;CL:0002518,7.62e-08,17;CL:1000746,8.61e-08,7;CL:1000612,8.61e-08,7 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000924!2.02e-08!173;UBERON:0006601!2.02e-08!173;UBERON:0000073!2.60e-08!94;UBERON:0001016!2.60e-08!94;UBERON:0000033!4.55e-08!123;UBERON:0000064!4.57e-08!219;UBERON:0004121!4.83e-08!169;UBERON:0000955!4.86e-08!69;UBERON:0006238!4.86e-08!69;UBERON:0003056!5.42e-08!61;UBERON:0000153!6.57e-08!129;UBERON:0007811!6.57e-08!129;UBERON:0005743!7.55e-08!86;UBERON:0002346!1.82e-07!90;UBERON:0001017!2.82e-07!82;UBERON:0003075!4.36e-07!86;UBERON:0007284!4.36e-07!86;UBERON:0002616!7.95e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;5.82e-08;7!UBERON:0001229;5.82e-08;7!UBERON:0006555;6.23e-08;15!UBERON:0004819;6.23e-08;15!UBERON:0001285;6.23e-08;15!UBERON:0007684;6.23e-08;15!UBERON:0000353;1.17e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,6.27e-08,15;UBERON:0009773,6.27e-08,15;UBERON:0001231,6.27e-08,15;UBERON:0001285,6.27e-08,15;UBERON:0007684,6.27e-08,15;UBERON:0004208,6.27e-08,15;UBERON:0010532,8.61e-08,7;UBERON:0000074,8.61e-08,7;UBERON:0001229,8.61e-08,7;UBERON:0001230,8.61e-08,7;UBERON:0003220,8.61e-08,7;UBERON:0005749,8.61e-08,7;UBERON:0004199,8.61e-08,7;UBERON:0004209,8.61e-08,7;UBERON:0004198,8.61e-08,7;UBERON:0000955,1.09e-07,68;UBERON:0006238,1.09e-07,68;UBERON:0000353,1.28e-07,15;UBERON:0006555,3.01e-07,16;UBERON:0004819,3.01e-07,16;UBERON:0000073,3.38e-07,53;UBERON:0002616,3.38e-07,53;UBERON:0003056,8.34e-07,61 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0.261185628199839,0.737201809504527,6.28021051175185,1.31064823278103,0.527533956456907,0.247532705920093,0.331397375727916,0,0.602694528023977,0,0.487932798790507,1.10808952269109,1.63200552995402,0.313454721478088,0.286235987131057,1.91624195102038,1.12988375635323,2.21598876669059,2.62721886239826,2.44003422072406,0,1.15148819429164,0,3.67768489791571,2.71085326900425,2.58827807116751,4.02829443017569,2.41687695228617,0.293600439334847,0,0.200544447470142,0.217010870715852,0.223915474239924,0.32389366601898,0,0.145398238779565,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0.376484679085209,0,0,0,0,0,0,0,0,0,0,0,0.251248665256743,0.521482918420201,0,0,0,0,0,0.425208599930087,0.419317291016752,0,0.150176892841506,0,0.570025487482497,0.59675003159727,0.365328307529268,0,1.09227722252426,0.889509253863555,0,1.20118796110804,2.29900975981793,3.96626923670917,2.86216126360609,0,0.587237189370939,0.382273228125229,0,0.560508562981536,0,0.196709770113833,0.393010762749165,0.411202997999018,0.501559486172034,0.32592226663359,0,0,0.779873198196215,0.294605907474837,0.443067789167242,0.541607727530031,1.5370958367081,0.910415432919148,0.493313713811028,0,0.289803085735052,0.14828656316206,0.267540828089713,0,0.906474741580529,0,0.68725489096526,1.26509846009751,0.637130828648193,0.651083453856419,0,0.301150238155546,0.895906278080929,0,0.473554504088034,1.64225599384209,0.201606743224732,0.534880391567015,0,0,0,0,0,0,0,0,0.486634870302636,0.945348171640679,0.665188192387692,0.351339142772504,0.523916301990851,2.18577172975525,0.741568885568859,0,0,0,0.238490624305342,0,0,2.38514888840046,2.58070378531837,1.38856200643038,0.56530794192401,0,0.550236083880135,1.8809546988313,0.516833518338658,1.06729878806013,0.66944122552934,0,0,0.976248230192678,0.735326160691737,0,0.892997282840798,2.69435247151404,3.0405099730497,3.06633274931766,0.949265659568129,0.549605231791222,0,0,3.48875241714027,0,0.12663051166458,0.132409180813219,0.573673241497627,0.709336764396714,0,0,0.98667019366864,0,0.134710672069688,0.490385709340376,0.454072282934794,0,0.234321431833797,0,2.85235910772225,0,1.40921398372518,3.0755859429945,1.82586048712923,0.408308342509787,2.08818339430006,0.206651562351531,0,0.247266929278557,0.910161361938026,1.43723628363248,2.18836948140286,3.37820003654303,2.21651292387346,0.438977620880838,0,0.600952235626387,0.113432183160021,0.538168907066586,0,0.211931901159562,0.600182192168805,0.206105058476878,0,0.744467425326359,0.506328996723799,0.487185025805993,0.504867548488229,0.368199594569197,0.161646056818812,0,0.806016785821122,1.01736355386293,0.773043412653187,0.818238361772504,0.860413786167011,0.243947412259191,0.530119073285941,0.580969714347592,1.14027160516907,0.252320850875628,0.36497735907583,0,1.28648187638577,1.38134921352481,0,0,0.591534000199219,0.337169380156203,0.241011029883482,0.55146986366197,0.217879444092406,0.949082476444386,0.269662616320329,0.784885860501384,0.38474715694639,5.16708818237254,1.40241773803446,0.8231480226628,2.94017422771084,0,0,0,2.20731549707325,0.614942192715568,0.343135620597051,0.878002283269004,0,1.10581869652794,0.740707561268237,0.651616610620649,2.07986957055916,0,0.463721619900307,0,0.721832238805369,0,0.190254152234598,3.1608175918371,4.29243081047436,0.246217006087397,0,0,0.93733833986777,0.335964256397719,0.708875486211932,0.268675568108545,0.581267877027924,1.91691339582606,0,1.32072651019839,0.207328115540772,0.576479813667846,0.25248486685276,0.190493682876507,0,0,0,0.205654985406647,0,0,1.00917975910825,1.74384027533312,0.22001485746285,0.129271715757778,0,0,0.26593811658487,0,1.54324424557285,0,1.3321108950805,0.142977993658148,1.08524321078289,0.823240336780769,0.325736184293735,0.355391948742546,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0.239624855491583,1.14861935834114,1.42636905040718,0.144781306667579,0.205476322550383,0.358121926479791,0.448340575974109,0.197030760201927,0.431255149719035,0.385029108839245,0.254094624222463,1.30139853857622,0.773288812777695,0.837581326671744,1.91381625495949,0.749007023947182,0,0,0.36807447515742,1.00034104211935,0.271265023699736,0,0,0.315404830067869,0.117141414992713,0,0,0,0,0.184369168541703,0.695068915744663,1.95801157462741,1.37257369524342,0.206768026122887,0.215714200818617,0,0.303127571446259,3.32870879020994,2.41912234663744,0.248107807818777,0,0,0,0,0,0,0.616838775210622,0,0.164254312027618,0,0.232420756919918,0.725156697549733,0.601519410909855,0,0.459257792658427,0.364182336013434,0,2.25599806453706,0.539107359730903,6.27479815341484,2.92278449306521,0.316654886678627,7.96133688496276,1.36074964221213,1.0795795805107,3.08454505380579,1.35473218771926,1.50506932156456,0.764628819135115,0,1.56712328305525,4.60445740956463,6.27445082459761,1.28225062558195,0.984043937099117,0.325378394664303,0.206082023295445,1.55668090191184,0.990113999047056,0.574265537996172,3.25030123018261,0,0.773365746336976,0.154048617114644,0.460511024178389,0.1378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| |||
|short_description=p@chr19:42784727..42784766,+ | |||
}} |
Revision as of 23:35, 20 January 2014
Short description: | p@chr19:42784727..42784766, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:42784727..42784766, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 6.27e-08 | 15 |
kidney cell | 7.62e-08 | 17 |
kidney epithelial cell | 7.62e-08 | 17 |
glomerular cell | 8.61e-08 | 7 |
kidney corpuscule cell | 8.61e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 6.27e-08 | 15 |
renal tubule | 6.27e-08 | 15 |
nephron tubule | 6.27e-08 | 15 |
nephron | 6.27e-08 | 15 |
uriniferous tubule | 6.27e-08 | 15 |
nephrogenic mesenchyme | 6.27e-08 | 15 |
primitive nephron | 8.61e-08 | 7 |
renal glomerulus | 8.61e-08 | 7 |
renal corpuscle | 8.61e-08 | 7 |
glomerular capsule | 8.61e-08 | 7 |
metanephric mesenchyme | 8.61e-08 | 7 |
glomerular tuft | 8.61e-08 | 7 |
S-shaped body | 8.61e-08 | 7 |
renal vesicle | 8.61e-08 | 7 |
comma-shaped body | 8.61e-08 | 7 |
brain | 1.09e-07 | 68 |
future brain | 1.09e-07 | 68 |
parenchyma | 1.28e-07 | 15 |
excretory tube | 3.01e-07 | 16 |
kidney epithelium | 3.01e-07 | 16 |
regional part of nervous system | 3.38e-07 | 53 |
regional part of brain | 3.38e-07 | 53 |
pre-chordal neural plate | 8.34e-07 | 61 |