FFCP PHASE1:Hg19::chr6:152957988..152958037,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23345 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17089 | |||
|TSSclassifier=strong | |||
|UniProt=F5GXQ8 | |||
|association_with_transcript=0bp_to_ENST00000367248_5end | |||
|coexpression_cluster_id=C4575 | |||
|description=CAGE_peak_3_at_SYNE1_5end | |||
|id=chr6:152957988..152958037,- | |||
|ontology_enrichment_celltype=CL:0000625!3.03e-09!11;CL:0000791!4.34e-08!18;CL:0000789!4.34e-08!18;CL:0002420!4.34e-08!18;CL:0002419!4.34e-08!18;CL:0000790!4.34e-08!18;CL:0000094!8.27e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000625;4.19e-12;11!CL:0000791;3.09e-09;18!CL:0000789;3.09e-09;18!CL:0002419;3.09e-09;18!CL:0000094;8.91e-09;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000625,4.30e-12,11;CL:0000791,3.28e-09,18;CL:0000789,3.28e-09,18;CL:0002420,3.28e-09,18;CL:0002419,3.28e-09,18;CL:0000790,3.28e-09,18;CL:0000094,9.19e-09,8 | |||
|ontology_enrichment_development_v019=CL:0000790;3.09e-09;18!UBERON:0006601;2.95e-08;82 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.07e-51!115;UBERON:0001049!2.13e-24!57;UBERON:0005068!2.13e-24!57;UBERON:0006241!2.13e-24!57;UBERON:0007135!2.13e-24!57;UBERON:0002616!1.36e-20!59;UBERON:0003080!5.98e-20!42;UBERON:0002780!1.81e-19!41;UBERON:0001890!1.81e-19!41;UBERON:0006240!1.81e-19!41;UBERON:0000955!2.36e-19!69;UBERON:0006238!2.36e-19!69;UBERON:0001017!1.71e-18!82;UBERON:0005743!3.35e-17!86;UBERON:0003075!1.21e-16!86;UBERON:0007284!1.21e-16!86;UBERON:0001893!2.08e-16!34;UBERON:0002020!2.54e-16!34;UBERON:0003528!2.54e-16!34;UBERON:0000073!7.69e-16!94;UBERON:0001016!7.69e-16!94;UBERON:0001869!7.80e-16!32;UBERON:0002791!9.94e-16!33;UBERON:0002346!2.47e-15!90;UBERON:0002619!1.51e-13!22;UBERON:0001950!2.07e-12!20;UBERON:0000153!1.01e-11!129;UBERON:0007811!1.01e-11!129;UBERON:0000956!2.07e-11!25;UBERON:0000203!2.07e-11!25;UBERON:0003056!3.48e-11!61;UBERON:0000033!4.33e-10!123;UBERON:0004121!5.26e-08!169;UBERON:0000924!1.59e-07!173;UBERON:0006601!1.59e-07!173;UBERON:0000479!1.91e-07!787 | |||
|ontology_enrichment_uberon_v019=UBERON:0001893;6.08e-19;34!UBERON:0001869;6.83e-19;32!UBERON:0003528;1.17e-18;34!UBERON:0002020;1.17e-18;34!UBERON:0002780;1.87e-18;41!UBERON:0001890;1.87e-18;41!UBERON:0002791;2.21e-18;32!UBERON:0002619;2.81e-18;22!UBERON:0000073;8.73e-18;53!UBERON:0002616;8.73e-18;53!UBERON:0001950;1.02e-16;20!UBERON:0007023;3.93e-15;114!UBERON:0000956;3.96e-15;25!UBERON:0000203;3.96e-15;25!UBERON:0000955;9.54e-12;68!UBERON:0001017;4.39e-11;75!UBERON:0001016;2.00e-09;83!UBERON:0002420;1.83e-08;9!UBERON:0007245;1.83e-08;9!UBERON:0010009;1.83e-08;9!UBERON:0010011;1.83e-08;9!UBERON:0000454;1.83e-08;9!UBERON:0000125;2.03e-08;9!UBERON:0002308;2.03e-08;9!UBERON:0000178;2.46e-08;15!UBERON:0000179;2.46e-08;15!UBERON:0000463;2.46e-08;15!UBERON:0009663;4.81e-07;7!UBERON:0000200;5.64e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,9.99e-61,114;UBERON:0001049,2.06e-31,56;UBERON:0005068,2.06e-31,56;UBERON:0006241,2.06e-31,56;UBERON:0007135,2.06e-31,56;UBERON:0000073,5.19e-30,53;UBERON:0002616,5.19e-30,53;UBERON:0002780,2.62e-25,41;UBERON:0001890,2.62e-25,41;UBERON:0003080,2.62e-25,41;UBERON:0006240,2.62e-25,41;UBERON:0000955,2.61e-24,68;UBERON:0006238,2.61e-24,68;UBERON:0001017,3.30e-22,81;UBERON:0001893,4.45e-22,34;UBERON:0003528,5.86e-22,34;UBERON:0002020,5.86e-22,34;UBERON:0001869,2.73e-21,32;UBERON:0002791,1.54e-20,32;UBERON:0003075,8.07e-20,82;UBERON:0007284,8.07e-20,82;UBERON:0001016,1.35e-19,89;UBERON:0002346,9.90e-19,86;UBERON:0002619,2.27e-18,22;UBERON:0001950,8.26e-17,20;UBERON:0000956,3.30e-15,25;UBERON:0000203,3.30e-15,25;UBERON:0010371,2.07e-14,104;UBERON:0003056,3.53e-14,61;UBERON:0010314,5.28e-13,132;UBERON:0004121,2.01e-08,171;UBERON:0000924,2.01e-08,171;UBERON:0006601,2.01e-08,171;UBERON:0002420,2.09e-08,9;UBERON:0007245,2.09e-08,9;UBERON:0010009,2.09e-08,9;UBERON:0010011,2.09e-08,9;UBERON:0000454,2.09e-08,9;UBERON:0011216,2.23e-08,223;UBERON:0000125,2.43e-08,9;UBERON:0002308,2.43e-08,9;UBERON:0000178,2.47e-08,15;UBERON:0000179,2.47e-08,15;UBERON:0000463,2.47e-08,15;UBERON:0003076,2.23e-07,15;UBERON:0003057,2.23e-07,15;UBERON:0000200,5.72e-07,6;UBERON:0009663,5.92e-07,7 | |||
|phase1_expression=1.63510541343501,0.428201047781966,1.12763523276777,4.00293193412522,0.893922188854576,1.74467704820074,0,0,0,0,0,0,0,0,0,0,0,0.730310090387373,0,0,0,0.313454721478088,0,0,0.502170558379211,0,0,0,4.72037132218685,24.5650814782216,6.03782880932696,0,0,0,0,0,0,6.09394949385065,10.8294001633877,14.1057065965304,0.447830948479849,3.2389366601898,1.28787783817093,0.145398238779565,2.26725566213286,0.485168122375632,0.464858073811369,1.23350366406548,0.309706370895104,0.28769239232215,0.512321413058201,0.47296445977717,1.37898272294647,1.93645405075148,1.35426486594342,1.31769637679823,0.272906150057846,0.674170453335254,0.612167784741805,0.320929027076094,0.639337125799041,0.989553900560148,0,0.852449501065388,0.290209238628584,0.56738522469114,0.622822248995575,0.75374599577023,1.0429658368404,0.434377689410233,0,2.57794345191295,0,0,0.212604299965044,0.628975936525128,1.79725809834392,1.65194582125657,4.17886525412408,0,0.19891667719909,0,0,0,0,0.853460445133014,0.400395987036012,0.574752439954483,0.661044872784862,0,0,0.587237189370939,0,0,6.1655941927969,0,0.983548850569165,3.53709686474248,1.23360899399706,0,0,0,0,0,0,0.664601683750863,0,0,0,0,0,0,0,0,0,0.906474741580529,6.89796888483458,3.09264700934367,7.33757106856558,10.8312240870193,16.2770863464105,14.2567806667256,12.7988851216107,20.4778577847069,21.2382235138988,17.2847393992132,22.9915839137893,27.2169103353389,28.6161009488353,22.5926070057166,0,0,0,3.97583067623023,1.00267582127178,1.44846518960824,0,0,0.0945348171640679,0.221729397462564,0.263504357079378,6.41797469938792,0,0,1.29818957461873,1.0447784237956,0.664789802594326,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5424333948851,23.2668158488995,0,10.933382937297,0.25326102332916,0.397227542439656,3.15520282823695,1.41867352879343,0,3.20246987189115,0,0,0.269421344139376,0.163461903113459,0.151357427644931,0,0,0,0,0,0.23486899728753,0.161872944368132,0.280901613404497,0,0,0.413303124703062,1.18800285728205,0.989067717114227,0,0,0,0.125118519871964,0,3.95079858792754,3.37136575378922,1.50238058906597,0.226864366320042,1.79389635688862,0,1.05965950579781,3.60109315301283,1.33968288009971,2.83404594050192,0.744467425326359,2.53164498361899,1.16924406193438,2.52433774244115,0.644349290496095,1.13152239773168,0.710019185033229,1.10827308050404,0.339121184620975,0,0,0,0.121973706129595,0,0.116193942869518,0,0,0,0,0,1.38134921352481,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,1.40241773803446,0.4115740113314,0,0,0,2.36315962672562,0,0,0.171567810298526,0,0,0,0,0,0,0,0,0.469634776943287,0,0,0,0,0,0,0.234004265139238,0.594524649154913,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04007436911366,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0.699810938274399,0,0,0,0.239624855491583,0,0,0.723906533337896,1.2328579353023,0.537182889719687,0.784596007954691,48.2725362494722,34.7160395523823,41.0697716095195,0.254094624222463,0,0,0.502548796003046,0,27.7132598860457,74.7903648010062,33.5676565883189,0.24538298343828,0,0,1.03985430765404,1.42743191037729,0.473107245101804,0.35142424497814,0,0,0,0,0.368738337083406,0.0868836144680828,0,0,10.958705384513,6.90285442619574,17.8235021531752,0,0,0,1.73675465473144,4.60385919864187,0.841980283299221,1.28139149255701,1.02341449813341,2.89537058058494,1.48418066444991,0.154209693802656,0.710246901252508,0.410635780069046,0.519254429183621,0.348631135379878,0,0,0,0.229628896329213,0.364182336013434,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0.219259876645935,0.261435451024901,0,0,0,4.43076350085206,0.0915694648183434,0,0,0,0,0.096670718292122,0.462145851343933,0,0,0.322260734604821,0.145016693914229,0.340906509664404,0.0890320356467374,0,0,0,0,0.929691098594572,0.94443704049192,0.6970372701606,0.308033580176089,0.532306030317022,0,0,0.715624433709956,0,0,0.762520775695299,0,0,1.90921948755562,0,0.899362287916574,1.09814811894422,0.353437207037059,0.202182481573316,0,0,0,0,0,0.272999822815972,0.282810863907425,1.13008116620243,1.10273068709225,0.66343897524122,0.438450885253763,0,0,0.202910376962704,1.8589409885985,0.563391205064483,0,0.0982490410131212,0,0.354761064070598,1.47775344708365,4.28083360847872,0.379473173765715,0,0,1.34060455107157,0,5.08376524194607,0,0,0,0,11.1638474031077,19.8805673857018,11.9625909306574,13.579211201094,15.2204041041892,6.48473311192717,9.18053443304795,10.3106272918255,0,0,0,0,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,8.51692475380653,0,0,0,0,0,0,0,0,0,0,0,2.05111450980652,0,1.78309414843965,0,0,0.296964680832639,0,4.97073823883149,11.8162309784831,0,0,0,2.59022384726391,3.59169090190492,0,0.306806047506464,0,4.97663340258892,0,0,0,2.26879832964947,7.18449277040819,8.89095921157095,11.6319929531426,11.3177079757459,1.99613798001194,0,0,5.07499702804355,0,0,0,1.72371686620732,0,0,15.9433449446491,16.0393263371793,38.1454340792708,74.3092626737829,43.1499523672179,12.2855822406225,0.32681539055697,0,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| |||
|short_description=p3@SYNE1 | |||
}} |
Revision as of 14:41, 22 January 2014
Short description: | p3@SYNE1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SYNE1_5end |
Coexpression cluster: | C4575_Neutrophils_cerebellum_Natural_CD8_Basophils_pituitary_Eosinophils |
Association with transcript: | 0bp_to_ENST00000367248_5end |
EntrezGene: | SYNE1 |
HGNC: | 17089 |
UniProt: | F5GXQ8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CD8-positive, alpha-beta T cell | 4.30e-12 | 11 |
mature alpha-beta T cell | 3.28e-09 | 18 |
alpha-beta T cell | 3.28e-09 | 18 |
immature T cell | 3.28e-09 | 18 |
mature T cell | 3.28e-09 | 18 |
immature alpha-beta T cell | 3.28e-09 | 18 |
granulocyte | 9.19e-09 | 8 |