FFCP PHASE2:Hg19::chr5:142783175..142783297,-: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:2908 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:7978 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=2908 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=7978 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=F8W959,P04150,F1D8N4,E5KQF5,E5KQF6 | ||
|association_with_transcript=0bp_to_ENST00000231509,ENST00000361001,ENST00000394464,NM_000176,NM_001020825,NM_001024094,NM_001204258,NM_001204259,NM_001204260,NM_001204261,NM_001204262,NM_001204263,NM_001204264,NM_001204265,uc003lmy.2,uc003lmz.2,uc003lna.2_5end | |association_with_transcript=0bp_to_ENST00000231509,ENST00000361001,ENST00000394464,NM_000176,NM_001020825,NM_001024094,NM_001204258,NM_001204259,NM_001204260,NM_001204261,NM_001204262,NM_001204263,NM_001204264,NM_001204265,uc003lmy.2,uc003lmz.2,uc003lna.2_5end | ||
|cluster_id=chr5:142783175..142783297,- | |cluster_id=chr5:142783175..142783297,- | ||
Latest revision as of 07:41, 25 September 2015
| Short description: | p1@NR3C1 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | Robust |
| TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
| DHS support(Yes/No): | Yes |
| Description: | CAGE_peak_1_at_NR3C1_5end |
| Coexpression cluster: | NA |
| Association with transcript: | 0bp_to_ENST00000231509, ENST00000361001, ENST00000394464, NM_000176, NM_001020825, NM_001024094, NM_001204258, NM_001204259, NM_001204260, NM_001204261, NM_001204262, NM_001204263, NM_001204264, NM_001204265, uc003lmy.2, uc003lmz.2, uc003lna.2_5end |
| EntrezGene: | NR3C1 |
| HGNC: | 7978 |
| UniProt: | F8W959P04150F1D8N4E5KQF5E5KQF6 |
| Genome view: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
| Sample | p1@NR3C1 |
|---|
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| myeloid leukocyte | 5.52e-18 | 72 |
| classical monocyte | 3.99e-17 | 42 |
| CD14-positive, CD16-negative classical monocyte | 3.99e-17 | 42 |
| mesenchymal cell | 3.98e-16 | 354 |
| leukocyte | 1.31e-15 | 136 |
| connective tissue cell | 2.84e-15 | 361 |
| myeloid lineage restricted progenitor cell | 2.91e-15 | 66 |
| granulocyte monocyte progenitor cell | 8.03e-15 | 67 |
| defensive cell | 2.95e-14 | 48 |
| phagocyte | 2.95e-14 | 48 |
Showing 1 to 10 of 27 entries
| Ontology term | p-value | n |
|---|---|---|
| hematopoietic system | 9.59e-18 | 98 |
| blood island | 9.59e-18 | 98 |
| connective tissue | 3.55e-15 | 371 |
| hemolymphoid system | 3.09e-13 | 108 |
| bone marrow | 3.98e-13 | 76 |
| bone element | 1.23e-11 | 82 |
| skeletal system | 3.21e-11 | 100 |
| skeletal element | 3.38e-10 | 90 |
| immune system | 5.12e-10 | 93 |
| musculoskeletal system | 8.20e-09 | 167 |
Showing 1 to 10 of 11 entries
