UBERON:0007685: Difference between revisions
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|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001231 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:43, 27 June 2012
| Name: | region of nephron tubule | ||
|---|---|---|---|
| Xrefs: |
| ||
| Synonyms: | "renal tubule region" EXACT [FMA:17692] | ||
| Comments: | note - consider moving MA:0000377 renal tubule here, as it includes the various segments (proximal etc) as subclasses, not parts |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0001231(nephron tubule),UBERON:0004810(nephron tubule epithelium) |
|---|---|
| part_of: | UBERON:0001231(nephron tubule) |
Children
| is a: | UBERON:0006853 (renal cortex tubule) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11595-120H2 (Renal Proximal Tubular Epithelial Cell, donor2)
- 11676-122H2 (Renal Proximal Tubular Epithelial Cell, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007685 (region of nephron tubule), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 8.98e-131 | FFCP PHASE2:Hg19::chr5:167718782..167718785,+#_da593697acae46596f993cb1b1ea63b5 | p10@WWC1 |
| 8.98e-131 | FFCP PHASE1:Hg19::chr5:167718782..167718785,+#_da593697acae46596f993cb1b1ea63b5 | p10@WWC1 |
| 1.01e-74 | FFCP PHASE1:Hg19::chr3:149260147..149260154,-#_1cb7fc90afd84bf055260aa031abcdb0 | p39@WWTR1 |
| 1.01e-74 | FFCP PHASE2:Hg19::chr3:149260147..149260154,-#_1cb7fc90afd84bf055260aa031abcdb0 | p39@WWTR1 |
| 1.24e-73 | FFCP PHASE1:Hg19::chr17:46679250..46679298,+#_337ef0f82b375da9d3ed9d07d87b9591 | p1@ENST00000491264 |
| 1.24e-73 | FFCP PHASE2:Hg19::chr17:46679250..46679298,+#_337ef0f82b375da9d3ed9d07d87b9591 | p1@ENST00000491264 |
| 2.39e-66 | FFCP PHASE1:Hg19::chr3:123667850..123667851,+#_e2147b2db9a47f2d16fadcc02c351140 | p@chr3:123667850..123667851, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:62055187..62055188,+#_e2147b2db9a47f2d16fadcc02c351140 | p@chr16:62055187..62055188, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr8:6614884..6614885,+#_e2147b2db9a47f2d16fadcc02c351140 | p@chr8:6614884..6614885, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:61687533..61687551,-#_e2147b2db9a47f2d16fadcc02c351140 | p@chr16:61687533..61687551, - |
| 2.39e-66 | FFCP PHASE2:Hg19::chr3:123667850..123667851,+#_e2147b2db9a47f2d16fadcc02c351140 | p@chr3:123667850..123667851, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr8:6614884..6614885,+#_e2147b2db9a47f2d16fadcc02c351140 | p@chr8:6614884..6614885, + |
| 2.39e-66 | FFCP PHASE1:Hg19::chr16:62055187..62055188,+#_e2147b2db9a47f2d16fadcc02c351140 | p@chr16:62055187..62055188, + |
| 2.39e-66 | FFCP PHASE2:Hg19::chr16:61687533..61687551,-#_e2147b2db9a47f2d16fadcc02c351140 | p@chr16:61687533..61687551, - |
| 1.22e-59 | FFCP PHASE2:Hg19::chr15:66420804..66420837,-#_7b6ebff80b632aae6cd86472ae193c66 | p4@MEGF11 |
| 1.22e-59 | FFCP PHASE1:Hg19::chr15:66420804..66420837,-#_7b6ebff80b632aae6cd86472ae193c66 | p4@MEGF11 |
| 3.75e-53 | FFCP PHASE1:Hg19::chr9:114828174..114828179,+#_25134089287bbd8e8bb5f4345b61ad30 | p@chr9:114828174..114828179, + |
| 3.75e-53 | FFCP PHASE2:Hg19::chr9:114828174..114828179,+#_25134089287bbd8e8bb5f4345b61ad30 | p@chr9:114828174..114828179, + |
| 1.65e-46 | FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_1d04b36bbcfd24f2fefcd2017fc0758b | p@chr7:140227349..140227360, - |
| 1.65e-46 | FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_1d04b36bbcfd24f2fefcd2017fc0758b | p@chr7:140227349..140227360, - |
| 7.81e-45 | FFCP PHASE1:Hg19::chr6:30890373..30890381,+#_b16de202d6fe431b163c11b95aec6ac2 | p9@VARS2 |
| 7.81e-45 | FFCP PHASE2:Hg19::chr6:30890373..30890381,+#_b16de202d6fe431b163c11b95aec6ac2 | p9@VARS2 |
| 6.91e-39 | FFCP PHASE2:Hg19::chr6:30890456..30890482,+#_a1dfa34ee4d1daba3affbe252a1471f2 | p11@VARS2 |
| 6.91e-39 | FFCP PHASE1:Hg19::chr6:30890456..30890482,+#_a1dfa34ee4d1daba3affbe252a1471f2 | p11@VARS2 |
| 1.49e-38 | FFCP PHASE2:Hg19::chr11:33718564..33718585,-#_7e20b8a8be7786b1c0cadc71cd4f775d | p1@ENST00000534431 |
| 1.49e-38 | FFCP PHASE1:Hg19::chr11:33718564..33718585,-#_7e20b8a8be7786b1c0cadc71cd4f775d | p1@ENST00000534431 |
| 2.64e-38 | FFCP PHASE2:Hg19::chr7:53466339..53466356,-#_9ae3534218038ea4ea1060cc47cec926 | p@chr7:53466339..53466356, - |
| 2.64e-38 | FFCP PHASE1:Hg19::chr7:53466339..53466356,-#_9ae3534218038ea4ea1060cc47cec926 | p@chr7:53466339..53466356, - |
| 3.48e-38 | FFCP PHASE2:Hg19::chr17:18160552..18160565,-#_e27a6b2093c1e634eb5626fc11345a4f | p@chr17:18160552..18160565, - |
| 3.48e-38 | FFCP PHASE1:Hg19::chr17:18160552..18160565,-#_e27a6b2093c1e634eb5626fc11345a4f | p@chr17:18160552..18160565, - |
| 3.86e-38 | FFCP PHASE2:Hg19::chr3:190105820..190105829,+#_0223d8252d3b228fb9ab214853c74b05 | p3@CLDN16 |
| 3.86e-38 | FFCP PHASE1:Hg19::chr3:190105820..190105829,+#_0223d8252d3b228fb9ab214853c74b05 | p3@CLDN16 |
| 5.76e-38 | FFCP PHASE1:Hg19::chr1:1100457..1100470,+#_c9aeff9808be2a9e4a8ff0878017baee | p@chr1:1100457..1100470, + |
| 5.76e-38 | FFCP PHASE2:Hg19::chr1:1100457..1100470,+#_c9aeff9808be2a9e4a8ff0878017baee | p@chr1:1100457..1100470, + |
| 2.08e-36 | FFCP PHASE1:Hg19::chr9:133986782..133986794,+#_beff0280354881675ed77085c74ac4d5 | p4@AIF1L |
| 2.08e-36 | FFCP PHASE2:Hg19::chr9:133986782..133986794,+#_beff0280354881675ed77085c74ac4d5 | p4@AIF1L |
| 2.25e-35 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_1969ba2794944a79334eddc075739dbf | p4@PAX2 |
| 2.25e-35 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_1969ba2794944a79334eddc075739dbf | p4@PAX2 |
| 3.2e-35 | FFCP PHASE2:Hg19::chr12:6485243..6485254,-#_1c75ca9bfd46f9618b0d7912e1537b69 | p18@SCNN1A |
| 3.2e-35 | FFCP PHASE1:Hg19::chr12:6485243..6485254,-#_1c75ca9bfd46f9618b0d7912e1537b69 | p18@SCNN1A |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:31023284..31023287,-#_df0ef25007a958b8e5720fb5949e22b6 | p@chr6:31023284..31023287, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:31023284..31023287,-#_df0ef25007a958b8e5720fb5949e22b6 | p@chr6:31023284..31023287, - |
| 2.09e-33 | FFCP PHASE2:Hg19::chr2:113994209..113994222,-#_5ba3b8b57bbb61b5656aee827f2549ab | p11@PAX8 |
| 2.09e-33 | FFCP PHASE1:Hg19::chr2:113994209..113994222,-#_5ba3b8b57bbb61b5656aee827f2549ab | p11@PAX8 |
| 1.41e-32 | FFCP PHASE1:Hg19::chr14:57960456..57960478,-#_e14b7effdffb203b59a4450c01d7fed0 | p2@C14orf105 |
| 1.41e-32 | FFCP PHASE2:Hg19::chr14:57960456..57960478,-#_e14b7effdffb203b59a4450c01d7fed0 | p2@C14orf105 |
| 2.17e-32 | FFCP PHASE1:Hg19::chr3:190105935..190105966,+#_fcf9d49a34a1258e2264da90c98303e9 | p1@CLDN16 |
| 2.17e-32 | FFCP PHASE2:Hg19::chr3:190105935..190105966,+#_fcf9d49a34a1258e2264da90c98303e9 | p1@CLDN16 |
| 3.1e-30 | FFCP PHASE1:Hg19::chr3:112127710..112127713,-#_09a5545ab769ff874aae9a1e8c8c5b55 | p@chr3:112127710..112127713, - |
| 3.1e-30 | FFCP PHASE2:Hg19::chr3:112127710..112127713,-#_09a5545ab769ff874aae9a1e8c8c5b55 | p@chr3:112127710..112127713, - |
| 4.84e-30 | FFCP PHASE1:Hg19::chr20:49347516..49347535,-#_b8ab2e23910909321137980359cb67b5 | p@chr20:49347516..49347535, - |
| 4.84e-30 | FFCP PHASE2:Hg19::chr20:49347516..49347535,-#_b8ab2e23910909321137980359cb67b5 | p@chr20:49347516..49347535, - |
| 6.17e-30 | FFCP PHASE1:Hg19::chr6:30890348..30890372,+#_3b09bdb04d0601ac9b8b61381344644e | p5@VARS2 |
| 6.17e-30 | FFCP PHASE2:Hg19::chr6:30890348..30890372,+#_3b09bdb04d0601ac9b8b61381344644e | p5@VARS2 |
| 8.26e-30 | FFCP PHASE1:Hg19::chr9:133986807..133986821,+#_af0e7cd68f6bf8cc9fc79b73ecc36e99 | p3@AIF1L |
| 8.26e-30 | FFCP PHASE2:Hg19::chr9:133986807..133986821,+#_af0e7cd68f6bf8cc9fc79b73ecc36e99 | p3@AIF1L |
| 8.74e-30 | FFCP PHASE1:Hg19::chr3:190106002..190106011,+#_f582dd0a6f2dad25205aa319ad30a410 | p4@CLDN16 |
| 8.74e-30 | FFCP PHASE2:Hg19::chr3:190106002..190106011,+#_f582dd0a6f2dad25205aa319ad30a410 | p4@CLDN16 |
| 4.28e-29 | FFCP PHASE1:Hg19::chr7:7606139..7606151,-#_65edd6dd9ecac08b4510627b7b2eb0f2 | p@chr7:7606139..7606151, - |
| 4.28e-29 | FFCP PHASE2:Hg19::chr7:7606139..7606151,-#_65edd6dd9ecac08b4510627b7b2eb0f2 | p@chr7:7606139..7606151, - |
| 5.09e-29 | FFCP PHASE2:Hg19::chr6:30890599..30890626,+#_ade8ed72dd47686c5975f92738cfc447 | p4@VARS2 |
| 5.09e-29 | FFCP PHASE1:Hg19::chr6:30890599..30890626,+#_ade8ed72dd47686c5975f92738cfc447 | p4@VARS2 |
| 4.74e-28 | FFCP PHASE2:Hg19::chr11:117695245..117695263,-#_644bcd60a5c30282e4d82132f0b1969c | p7@FXYD2 |
| 4.74e-28 | FFCP PHASE1:Hg19::chr11:117695245..117695263,-#_644bcd60a5c30282e4d82132f0b1969c | p7@FXYD2 |
| 2.38e-27 | FFCP PHASE2:Hg19::chr11:117695233..117695244,-#_468f68db37c6960e715973aa18401162 | p11@FXYD2 |
| 2.38e-27 | FFCP PHASE1:Hg19::chr11:117695233..117695244,-#_468f68db37c6960e715973aa18401162 | p11@FXYD2 |
| 3.11e-27 | FFCP PHASE2:Hg19::chr10:91043499..91043510,+#_00a172544b1d15f1b3647bca899489e2 | p2@ENST00000354541 |
| 3.11e-27 | FFCP PHASE1:Hg19::chr10:91043499..91043510,+#_00a172544b1d15f1b3647bca899489e2 | p2@ENST00000354541 |
| 5.07e-27 | FFCP PHASE2:Hg19::chr1:17519128..17519138,+#_6b3bb02a9837de36bbd4776c35cf2714 | p@chr1:17519128..17519138, + |
| 5.07e-27 | FFCP PHASE1:Hg19::chr1:17519128..17519138,+#_6b3bb02a9837de36bbd4776c35cf2714 | p@chr1:17519128..17519138, + |
| 1.22e-26 | FFCP PHASE1:Hg19::chr18:77104123..77104150,+#_acc767652170d1a13cca61ed8fc3a93a | p5@ATP9B |
| 1.22e-26 | FFCP PHASE2:Hg19::chr18:77104123..77104150,+#_acc767652170d1a13cca61ed8fc3a93a | p5@ATP9B |
| 2.01e-25 | FFCP PHASE2:Hg19::chr7:98453821..98453843,-#_26957461d0f3ddaf29c6beec6f7acd0d | p@chr7:98453821..98453843, - |
| 2.01e-25 | FFCP PHASE1:Hg19::chr7:98453821..98453843,-#_26957461d0f3ddaf29c6beec6f7acd0d | p@chr7:98453821..98453843, - |
| 4.31e-25 | FFCP PHASE2:Hg19::chr2:167467988..167467993,-#_4cadfe112d34f807ab8282ddbee0c567 | p@chr2:167467988..167467993, - |
| 4.31e-25 | FFCP PHASE2:Hg19::chr9:133986740..133986750,+#_4cadfe112d34f807ab8282ddbee0c567 | p7@AIF1L |
| 4.31e-25 | FFCP PHASE1:Hg19::chr2:167467988..167467993,-#_4cadfe112d34f807ab8282ddbee0c567 | p@chr2:167467988..167467993, - |
| 4.31e-25 | FFCP PHASE1:Hg19::chr9:133986740..133986750,+#_4cadfe112d34f807ab8282ddbee0c567 | p7@AIF1L |
| 5.5e-25 | FFCP PHASE1:Hg19::chr2:189157368..189157381,-#_32f7321c24594c1ec0c7a1452b8b0490 | p@chr2:189157368..189157381, - |
| 5.5e-25 | FFCP PHASE2:Hg19::chr2:189157368..189157381,-#_32f7321c24594c1ec0c7a1452b8b0490 | p@chr2:189157368..189157381, - |
| 7.93e-25 | FFCP PHASE1:Hg19::chr9:119741711..119741743,-#_4f25d3ba94522c1c9881ddcf56dd292a | p@chr9:119741711..119741743, - |
| 7.93e-25 | FFCP PHASE2:Hg19::chr9:119741711..119741743,-#_4f25d3ba94522c1c9881ddcf56dd292a | p@chr9:119741711..119741743, - |
| 8.07e-25 | FFCP PHASE2:Hg19::chr19:51472081..51472088,-#_22e911b632f0da6610e128bde96b0a41 | p8@KLK6 |
| 8.07e-25 | FFCP PHASE1:Hg19::chr19:51472081..51472088,-#_22e911b632f0da6610e128bde96b0a41 | p8@KLK6 |
| 1.21e-24 | FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_444fd293424a82d7c40006ff67d50761 | p7@HOXA10 |
| 1.21e-24 | FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_444fd293424a82d7c40006ff67d50761 | p7@HOXA10 |
| 1.29e-24 | FFCP PHASE1:Hg19::chr20:6034241..6034256,-#_35a74ae84aafa78910913d13035f7921 | p@chr20:6034241..6034256, - |
| 1.29e-24 | FFCP PHASE2:Hg19::chr20:6034241..6034256,-#_35a74ae84aafa78910913d13035f7921 | p@chr20:6034241..6034256, - |
| 7.91e-24 | FFCP PHASE2:Hg19::chr21:41029235..41029269,+#_fd91614e982f6d70bd6b3eb5b918fddd | p2@B3GALT5 |
| 7.91e-24 | FFCP PHASE2:Hg19::chr11:117695415..117695426,-#_fd91614e982f6d70bd6b3eb5b918fddd | p3@FXYD2 |
| 7.91e-24 | FFCP PHASE1:Hg19::chr11:117695415..117695426,-#_fd91614e982f6d70bd6b3eb5b918fddd | p3@FXYD2 |
| 7.91e-24 | FFCP PHASE1:Hg19::chr21:41029235..41029269,+#_fd91614e982f6d70bd6b3eb5b918fddd | p2@B3GALT5 |
| 9.99e-24 | FFCP PHASE2:Hg19::chr18:3456189..3456200,+#_d29a5f9638116120f345a1aeb02ecdd8 | p@chr18:3456189..3456200, + |
| 9.99e-24 | FFCP PHASE1:Hg19::chr10:102505954..102505973,+#_d29a5f9638116120f345a1aeb02ecdd8 | p3@PAX2 |
| 9.99e-24 | FFCP PHASE2:Hg19::chr10:102505954..102505973,+#_d29a5f9638116120f345a1aeb02ecdd8 | p3@PAX2 |
| 9.99e-24 | FFCP PHASE1:Hg19::chr18:3456189..3456200,+#_d29a5f9638116120f345a1aeb02ecdd8 | p@chr18:3456189..3456200, + |
| 3.27e-23 | FFCP PHASE2:Hg19::chr12:6484832..6484841,+#_2595370376d24092b88d9591567d6441 | p@chr12:6484832..6484841, + |
| 3.27e-23 | FFCP PHASE1:Hg19::chr12:6484832..6484841,+#_2595370376d24092b88d9591567d6441 | p@chr12:6484832..6484841, + |
| 3.29e-23 | FFCP PHASE1:Hg19::chr3:43532224..43532252,-#_8992a41ce2e78594fb20308e3668dd69 | p@chr3:43532224..43532252, - |
| 3.29e-23 | FFCP PHASE2:Hg19::chr3:43532224..43532252,-#_8992a41ce2e78594fb20308e3668dd69 | p@chr3:43532224..43532252, - |
