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MCL coexpression mm9:254: Difference between revisions

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|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0459332481799833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434704241352084,1.30188032217863,0.767699598167391,0.786844575342186,0.834061262597707,0.381014703081243,0,0,0,0,0,0,0,0,0,0,0.72745889831033,0,0,0,0,0,0,0.0917293418104957,0,0.152857450210935,0,0,0,0,0,0,0,0,0.098801861608942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123988367667141,0,0,0,0,0,0,0,0,0,0.0973736644748266,0,0,0,0.0849828766602549,0.0788703512227347,0,0,0,0,0,0.0570083229196787,0.0266298923127834,0.0597943799295356,0.0633328814307688,0.174231006339549,0.44384412465388,0,0,0,0.0347827766973198,0.093833775061694,0.098514232005992,0.270233464711444,1.04978066217643,0.375262426964128,0.725343592025448,0.638416222351445,0.351825418422672,0.48332806548851,0.353297106602279,0.940471476434831,0.0425879103467237,0,0,0,0,0,0,0,0,0,0,0,0,0.0586723554240733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199470399831828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.066440322267935,0,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00898761908447335,0.0269518943326477,0.0242538736058389,0,0,0,0,0.0055534444006628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155257708002722,0,0,0
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0459332481799833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434704241352084,1.30188032217863,0.767699598167391,0.786844575342186,0.834061262597707,0.381014703081243,0,0,0,0,0,0,0,0,0,0,0.72745889831033,0,0,0,0,0,0,0.0917293418104957,0,0.152857450210935,0,0,0,0,0,0,0,0,0.098801861608942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123988367667141,0,0,0,0,0,0,0,0,0,0.0973736644748266,0,0,0,0.0849828766602549,0.0788703512227347,0,0,0,0,0,0.0570083229196787,0.0266298923127834,0.0597943799295356,0.0633328814307688,0.174231006339549,0.44384412465388,0,0,0,0.0347827766973198,0.093833775061694,0.098514232005992,0.270233464711444,1.04978066217643,0.375262426964128,0.725343592025448,0.638416222351445,0.351825418422672,0.48332806548851,0.353297106602279,0.940471476434831,0.0425879103467237,0,0,0,0,0,0,0,0,0,0,0,0,0.0586723554240733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199470399831828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.066440322267935,0,0.0529304404135566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00898761908447335,0.0269518943326477,0.0242538736058389,0,0,0,0,0.0055534444006628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155257708002722,0,0,0
|gostat_on_MCL_coexpression=
|gostat_on_MCL_coexpression=
|ontology_enrichment_celltype=CL:0000181!2.42e-08!5;CL:0000417!2.42e-08!5;CL:0000668!2.42e-08!5;CL:0000412!2.42e-08!5;CL:0000182!2.42e-08!5
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0002107!7.86e-31!22;UBERON:0007499!7.86e-31!22;UBERON:0006925!7.86e-31!22;UBERON:0009497!7.86e-31!22;UBERON:0000015!7.86e-31!22;UBERON:0002423!7.86e-31!22;UBERON:0006235!7.86e-31!22;UBERON:0008835!7.86e-31!22;UBERON:0003894!7.86e-31!22;UBERON:0004161!7.86e-31!22;UBERON:0008836!7.86e-31!22;UBERON:0009854!2.79e-29!23;UBERON:0009856!2.79e-29!23;UBERON:0002365!1.49e-26!25;UBERON:0002330!1.49e-26!25;UBERON:0005172!5.19e-21!49;UBERON:0005173!5.19e-21!49;UBERON:0002417!5.19e-21!49;UBERON:0000916!5.19e-21!49;UBERON:0009569!8.30e-17!66;UBERON:0003104!1.11e-15!61;UBERON:0009142!1.11e-15!61;UBERON:0005256!3.08e-14!45;UBERON:0005177!5.54e-13!79;UBERON:0003914!6.28e-12!47;UBERON:0002100!1.27e-10!90;UBERON:0003929!1.54e-09!55;UBERON:0002368!1.75e-09!60;UBERON:0004921!7.60e-09!114;UBERON:0001007!1.41e-08!116;UBERON:0001555!1.41e-08!116;UBERON:0007026!1.41e-08!116;UBERON:0005911!1.51e-08!69;UBERON:0001041!1.83e-08!80;UBERON:0002530!2.14e-08!65;UBERON:0004119!2.54e-08!118;UBERON:0000925!2.54e-08!118;UBERON:0006595!2.54e-08!118;UBERON:0000490!3.18e-07!66;UBERON:0000949!3.86e-07!72;UBERON:0000466!7.24e-07!79
}}
}}

Revision as of 18:37, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr10:75400042..75400078,+p@chr10:75400042..75400078
+
Mm9::chr10:79145051..79145067,+p6@Cdc34
Mm9::chr11:7097807..7097814,+p2@Igfbp1
Mm9::chr11:77694689..77694695,-p@chr11:77694689..77694695
-
Mm9::chr12:105652032..105652072,+p@chr12:105652032..105652072
+
Mm9::chr12:88504721..88504747,+p@chr12:88504721..88504747
+
Mm9::chr14:51724838..51724856,+p@chr14:51724838..51724856
+
Mm9::chr14:52530380..52530414,-p@chr14:52530380..52530414
-
Mm9::chr15:10288437..10288460,-p@chr15:10288437..10288460
-
Mm9::chr15:82286766..82286778,+p@chr15:82286766..82286778
+
Mm9::chr16:22939457..22939468,+p@chr16:22939457..22939468
+
Mm9::chr17:12586030..12586040,+p@chr17:12586030..12586040
+
Mm9::chr17:34998096..34998110,-p@chr17:34998096..34998110
-
Mm9::chr17:56260036..56260043,-p@chr17:56260036..56260043
-
Mm9::chr17:71439709..71439713,+p@chr17:71439709..71439713
+
Mm9::chr17:71553871..71553894,+p7@Lpin2
Mm9::chr18:20828571..20828599,+p@chr18:20828571..20828599
+
Mm9::chr1:132660649..132660660,-p@chr1:132660649..132660660
-
Mm9::chr2:32279527..32279549,-p2@Slc25a25
Mm9::chr2:4848530..4848543,+p@chr2:4848530..4848543
+
Mm9::chr4:150228125..150228159,+p4@Errfi1
Mm9::chr4:150228162..150228172,+p5@Errfi1
Mm9::chr4:150239482..150239517,+p@chr4:150239482..150239517
+
Mm9::chr4:150240485..150240505,+p@chr4:150240485..150240505
+
Mm9::chr4:150240916..150240941,+p@chr4:150240916..150240941
+
Mm9::chr4:150241156..150241181,+p@chr4:150241156..150241181
+
Mm9::chr5:136206163..136206180,+p@chr5:136206163..136206180
+
Mm9::chr5:65815567..65815578,-p@chr5:65815567..65815578
-
Mm9::chr7:147959034..147959049,+p@chr7:147959034..147959049
+
Mm9::chr8:121966378..121966412,+p@chr8:121966378..121966412
+
Mm9::chr9:107557382..107557401,-p@chr9:107557382..107557401
-
Mm9::chr9:46038187..46038279,+p@chr9:46038187..46038279
+
Mm9::chrX:98571698..98571712,+p5@Gjb1


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
metabolising cell2.42e-085
endopolyploid cell2.42e-085
parenchymal cell2.42e-085
polyploid cell2.42e-085
hepatocyte2.42e-085

Uber Anatomy
Ontology termp-valuen
liver7.86e-3122
epithelial sac7.86e-3122
digestive gland7.86e-3122
epithelium of foregut-midgut junction7.86e-3122
anatomical boundary7.86e-3122
hepatobiliary system7.86e-3122
foregut-midgut junction7.86e-3122
hepatic diverticulum7.86e-3122
liver primordium7.86e-3122
septum transversum7.86e-3122
liver bud7.86e-3122
digestive tract diverticulum2.79e-2923
sac2.79e-2923
exocrine gland1.49e-2625
exocrine system1.49e-2625
abdomen element5.19e-2149
abdominal segment element5.19e-2149
abdominal segment of trunk5.19e-2149
abdomen5.19e-2149
subdivision of trunk8.30e-1766
mesenchyme1.11e-1561
entire embryonic mesenchyme1.11e-1561
trunk mesenchyme3.08e-1445
trunk region element5.54e-1379
epithelial tube6.28e-1247
trunk1.27e-1090
gut epithelium1.54e-0955
endocrine gland1.75e-0960
subdivision of digestive tract7.60e-09114
digestive system1.41e-08116
digestive tract1.41e-08116
primitive gut1.41e-08116
endo-epithelium1.51e-0869
foregut1.83e-0880
gland2.14e-0865
endoderm-derived structure2.54e-08118
endoderm2.54e-08118
presumptive endoderm2.54e-08118
unilaminar epithelium3.18e-0766
endocrine system3.86e-0772
immaterial anatomical entity7.24e-0779


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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