FFCP PHASE1:Hg19::chr12:40618919..40618928,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=120892|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18618|TSSclassifier=S|UniProt=Q5S007|association_with_transcript=43bp_to_ENST00000298910_5end|coexpression_cluster_id=C498|description=CAGE_peak_9_at_LRRK2_5end|id=chr12:40618919..40618928,+|ontology_enrichment_celltype=CL:0000738!1.54e-30!140;CL:0002057!1.90e-26!42;CL:0002087!8.84e-25!119;CL:0000860!4.05e-24!45;CL:0000037!8.59e-23!172;CL:0000566!8.59e-23!172;CL:0000988!1.25e-20!182;CL:0002032!3.03e-20!165;CL:0000837!3.03e-20!165;CL:0000766!5.18e-20!76;CL:0002031!1.14e-19!124;CL:0000236!3.52e-17!14;CL:0000945!5.34e-17!24;CL:0000826!5.34e-17!24;CL:0002009!1.95e-16!65;CL:0002194!7.13e-16!63;CL:0000576!7.13e-16!63;CL:0000040!7.13e-16!63;CL:0000559!7.13e-16!63;CL:0000557!2.29e-14!71;CL:0000839!1.64e-13!70;CL:0000763!3.81e-13!112;CL:0000049!3.81e-13!112;CL:0002393!2.07e-10!9;CL:0002397!2.07e-10!9;CL:0000094!2.01e-09!8;CL:0000775!1.73e-07!3;CL:0000542!3.46e-07!53;CL:0000051!3.46e-07!53;CL:0000875!7.46e-07!3;CL:0002396!7.46e-07!3|ontology_enrichment_celltype_v019=CL:0000236;9.67e-56;13!CL:0000945;2.72e-54;24!CL:0000094;9.19e-20;8!CL:0000775;1.43e-19;3!CL:0000542;2.16e-16;53!CL:0000081;2.56e-14;11!CL:0000771;6.24e-14;2!CL:0000875;7.29e-09;3!CL:0002396;7.29e-09;3!CL:0000738;1.18e-08;136!CL:0002087;4.28e-08;104|ontology_enrichment_celltype_v019_2=CL:0000945,8.53e-55,24;CL:0000826,8.53e-55,24;CL:0000236,5.02e-52,14;CL:0000738,9.18e-30,136;CL:0002032,2.37e-24,161;CL:0000837,2.37e-24,161;CL:0000838,1.25e-23,52;CL:0000542,3.98e-23,53;CL:0000051,3.98e-23,53;CL:0000037,4.02e-23,168;CL:0002087,5.81e-23,115;CL:0002031,8.05e-22,120;CL:0000988,1.11e-21,177;CL:0000094,7.18e-20,8;CL:0000775,1.08e-19,3;CL:0000081,2.14e-14,11;CL:0000771,5.51e-14,2;CL:0000766,2.02e-11,72;CL:0002393,1.13e-10,9;CL:0002397,1.13e-10,9;CL:0000875,8.92e-09,3;CL:0002396,8.92e-09,3;CL:0000134,3.73e-08,354;CL:0002320,6.86e-08,361;CL:0000860,8.56e-08,42;CL:0002057,8.56e-08,42;CL:0000219,5.87e-07,386;CL:0000763,7.76e-07,108;CL:0000049,7.76e-07,108|ontology_enrichment_development_v019=CL:0000051;2.16e-16;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002390!5.25e-22!102;UBERON:0003061!5.25e-22!102;UBERON:0002193!3.43e-20!112;UBERON:0007023!5.06e-13!115;UBERON:0002371!7.27e-12!80;UBERON:0001474!2.24e-11!86;UBERON:0000178!3.93e-11!15;UBERON:0000179!3.93e-11!15;UBERON:0000463!3.93e-11!15;UBERON:0004765!5.16e-11!101;UBERON:0001434!5.16e-11!101;UBERON:0002405!2.31e-09!115;UBERON:0001950!2.40e-07!20;UBERON:0001893!4.48e-07!34|ontology_enrichment_uberon_v019=UBERON:0002171;2.91e-07;1!UBERON:0006518;2.91e-07;1!UBERON:0008949;2.91e-07;1!UBERON:0000101;2.91e-07;1!UBERON:0002167;2.91e-07;1|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.57e-07,371;UBERON:0002171,3.84e-07,1;UBERON:0006518,3.84e-07,1;UBERON:0008949,3.84e-07,1;UBERON:0000101,3.84e-07,1;UBERON:0002167,3.84e-07,1|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0.487932798790507,0,0,0,0,0,0,1.45185470921107,1.39571002064908,1.8890587515283,0,0,0.309632246632152,0,0,0,0,0,0,1.66198622559563,0,0,0,0,0,0.145398238779565,0.377875943688809,1.21292030593908,0,0,0.309706370895104,0.575384784644301,0.256160706529101,1.41889337933151,0,0,0,0.376484679085209,0,0.224723484445085,0,0,0.639337125799041,1.31940520074686,0.997318288108159,0,0.290209238628584,0,0.622822248995575,0,0,1.08594422352558,0,0.368277635987565,0.316462387440884,1.05627643155971,0.637812899895131,0.628975936525128,0.561643155732475,0.450530678524519,0.48217676009124,0.570025487482497,1.39241674039363,1.27864907635244,5.27988733383968,1.63841583378639,5.33705552318133,3.84057200309856,1.60158394814405,5.17277195959035,3.30522436392431,3.81621501814146,1.70763890732835,3.52342313622563,1.91136614062614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0.324547393654683,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.9534125230819,7.75560528296651,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,2.99602809578873,2.99161459204025,5.8018171881045,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01489521846434,0,0.569647187174163,0.238231775457789,2.05681136543097,0.648473311192717,2.70015718619057,0,0,0,0,0.929015875628594,0,0,0,0,0,0,0,0,0.228234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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=120892 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18618 | |||
|TSSclassifier=S | |||
|UniProt=Q5S007 | |||
|association_with_transcript=43bp_to_ENST00000298910_5end | |||
|coexpression_cluster_id=C498 | |||
|description=CAGE_peak_9_at_LRRK2_5end | |||
|id=chr12:40618919..40618928,+ | |||
|ontology_enrichment_celltype=CL:0000738!1.54e-30!140;CL:0002057!1.90e-26!42;CL:0002087!8.84e-25!119;CL:0000860!4.05e-24!45;CL:0000037!8.59e-23!172;CL:0000566!8.59e-23!172;CL:0000988!1.25e-20!182;CL:0002032!3.03e-20!165;CL:0000837!3.03e-20!165;CL:0000766!5.18e-20!76;CL:0002031!1.14e-19!124;CL:0000236!3.52e-17!14;CL:0000945!5.34e-17!24;CL:0000826!5.34e-17!24;CL:0002009!1.95e-16!65;CL:0002194!7.13e-16!63;CL:0000576!7.13e-16!63;CL:0000040!7.13e-16!63;CL:0000559!7.13e-16!63;CL:0000557!2.29e-14!71;CL:0000839!1.64e-13!70;CL:0000763!3.81e-13!112;CL:0000049!3.81e-13!112;CL:0002393!2.07e-10!9;CL:0002397!2.07e-10!9;CL:0000094!2.01e-09!8;CL:0000775!1.73e-07!3;CL:0000542!3.46e-07!53;CL:0000051!3.46e-07!53;CL:0000875!7.46e-07!3;CL:0002396!7.46e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000236;9.67e-56;13!CL:0000945;2.72e-54;24!CL:0000094;9.19e-20;8!CL:0000775;1.43e-19;3!CL:0000542;2.16e-16;53!CL:0000081;2.56e-14;11!CL:0000771;6.24e-14;2!CL:0000875;7.29e-09;3!CL:0002396;7.29e-09;3!CL:0000738;1.18e-08;136!CL:0002087;4.28e-08;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,8.53e-55,24;CL:0000826,8.53e-55,24;CL:0000236,5.02e-52,14;CL:0000738,9.18e-30,136;CL:0002032,2.37e-24,161;CL:0000837,2.37e-24,161;CL:0000838,1.25e-23,52;CL:0000542,3.98e-23,53;CL:0000051,3.98e-23,53;CL:0000037,4.02e-23,168;CL:0002087,5.81e-23,115;CL:0002031,8.05e-22,120;CL:0000988,1.11e-21,177;CL:0000094,7.18e-20,8;CL:0000775,1.08e-19,3;CL:0000081,2.14e-14,11;CL:0000771,5.51e-14,2;CL:0000766,2.02e-11,72;CL:0002393,1.13e-10,9;CL:0002397,1.13e-10,9;CL:0000875,8.92e-09,3;CL:0002396,8.92e-09,3;CL:0000134,3.73e-08,354;CL:0002320,6.86e-08,361;CL:0000860,8.56e-08,42;CL:0002057,8.56e-08,42;CL:0000219,5.87e-07,386;CL:0000763,7.76e-07,108;CL:0000049,7.76e-07,108 | |||
|ontology_enrichment_development_v019=CL:0000051;2.16e-16;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!5.25e-22!102;UBERON:0003061!5.25e-22!102;UBERON:0002193!3.43e-20!112;UBERON:0007023!5.06e-13!115;UBERON:0002371!7.27e-12!80;UBERON:0001474!2.24e-11!86;UBERON:0000178!3.93e-11!15;UBERON:0000179!3.93e-11!15;UBERON:0000463!3.93e-11!15;UBERON:0004765!5.16e-11!101;UBERON:0001434!5.16e-11!101;UBERON:0002405!2.31e-09!115;UBERON:0001950!2.40e-07!20;UBERON:0001893!4.48e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002171;2.91e-07;1!UBERON:0006518;2.91e-07;1!UBERON:0008949;2.91e-07;1!UBERON:0000101;2.91e-07;1!UBERON:0002167;2.91e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,1.57e-07,371;UBERON:0002171,3.84e-07,1;UBERON:0006518,3.84e-07,1;UBERON:0008949,3.84e-07,1;UBERON:0000101,3.84e-07,1;UBERON:0002167,3.84e-07,1 | |||
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|short_description=p9@LRRK2 | |||
}} |
Revision as of 22:34, 10 September 2013
Short description: | p9@LRRK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_9_at_LRRK2_5end |
Coexpression cluster: | C498_Eosinophils_Neutrophils_CD19_Burkitt_diffuse_lymphoma_CD14 |
Association with transcript: | 43bp_to_ENST00000298910_5end |
EntrezGene: | LRRK2 |
HGNC: | 18618 |
UniProt: | Q5S007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 8.53e-55 | 24 |
pro-B cell | 8.53e-55 | 24 |
B cell | 5.02e-52 | 14 |
leukocyte | 9.18e-30 | 136 |
hematopoietic oligopotent progenitor cell | 2.37e-24 | 161 |
hematopoietic multipotent progenitor cell | 2.37e-24 | 161 |
lymphoid lineage restricted progenitor cell | 1.25e-23 | 52 |
lymphocyte | 3.98e-23 | 53 |
common lymphoid progenitor | 3.98e-23 | 53 |
hematopoietic stem cell | 4.02e-23 | 168 |
nongranular leukocyte | 5.81e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 8.05e-22 | 120 |
hematopoietic cell | 1.11e-21 | 177 |
granulocyte | 7.18e-20 | 8 |
neutrophil | 1.08e-19 | 3 |
blood cell | 2.14e-14 | 11 |
eosinophil | 5.51e-14 | 2 |
myeloid leukocyte | 2.02e-11 | 72 |
intermediate monocyte | 1.13e-10 | 9 |
CD14-positive, CD16-positive monocyte | 1.13e-10 | 9 |
non-classical monocyte | 8.92e-09 | 3 |
CD14-low, CD16-positive monocyte | 8.92e-09 | 3 |
mesenchymal cell | 3.73e-08 | 354 |
connective tissue cell | 6.86e-08 | 361 |
classical monocyte | 8.56e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.56e-08 | 42 |
motile cell | 5.87e-07 | 386 |
myeloid cell | 7.76e-07 | 108 |
common myeloid progenitor | 7.76e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 1.57e-07 | 371 |
lower lobe of right lung | 3.84e-07 | 1 |
right lung lobe | 3.84e-07 | 1 |
lower lobe of lung | 3.84e-07 | 1 |
lobe of lung | 3.84e-07 | 1 |
right lung | 3.84e-07 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.