FFCP PHASE1:Hg19::chr12:65928345..65928348,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:65928345..65928348,-|id=chr12:65928345..65928348,-|ontology_enrichment_celltype=CL:0002594!8.72e-43!4;CL:0002588!2.06e-22!2;CL:0000359!1.22e-11!32;CL:0000393!2.27e-10!60;CL:0000211!2.27e-10!60;CL:0000187!5.64e-09!54;CL:0000192!9.06e-09!42;CL:0000514!9.06e-09!42;CL:0000680!1.82e-08!57;CL:0000056!1.82e-08!57;CL:0000355!1.82e-08!57;CL:0000183!3.72e-08!59;CL:0002543!4.19e-08!6|ontology_enrichment_celltype_v019=CL:0002594;4.05e-40;4!CL:0002588;3.81e-21;2!CL:0000359;9.29e-11;32!CL:0002569;5.54e-08;6!CL:0002543;6.78e-08;6!CL:0000192;3.58e-07;43|ontology_enrichment_celltype_v019_2=CL:0002594,4.05e-40,4;CL:0002588,3.81e-21,2;CL:0000359,6.12e-12,32;CL:0000192,4.33e-09,43;CL:0000514,4.33e-09,43;CL:0002569,5.54e-08,6;CL:0002543,6.78e-08,6;CL:0000187,2.87e-07,55;CL:0000680,6.27e-07,58;CL:0000056,6.27e-07,58;CL:0000355,6.27e-07,58|ontology_enrichment_development_v019=CL:0000514;3.58e-07;43!CL:0000355;9.18e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001310!8.72e-43!4;UBERON:0001638!2.52e-19!9;UBERON:0003920!2.52e-19!9;UBERON:0004582!2.52e-19!9;UBERON:0001981!1.77e-10!60;UBERON:0007500!1.77e-10!60;UBERON:0004537!1.77e-10!60;UBERON:0006965!1.77e-10!60;UBERON:0002066!1.55e-09!5;UBERON:0000055!5.47e-09!69;UBERON:0001134!7.27e-08!61;UBERON:0002036!7.27e-08!61;UBERON:0003082!7.27e-08!61;UBERON:0002049!9.95e-08!79;UBERON:0007798!9.95e-08!79;UBERON:0002385!1.36e-07!63;UBERON:0001015!1.36e-07!63;UBERON:0000383!1.36e-07!63;UBERON:0004872!3.28e-07!84;UBERON:0004290!9.21e-07!70|ontology_enrichment_uberon_v019=UBERON:0001310;4.05e-40;4!UBERON:0010260;4.97e-40;9!UBERON:0001638;1.35e-18;9!UBERON:0003920;1.35e-18;9!UBERON:0004582;1.35e-18;9!UBERON:0002066;2.74e-09;5!UBERON:0003422;5.54e-08;6!UBERON:0002049;9.30e-08;75!UBERON:0007798;9.30e-08;75!UBERON:0003104;5.08e-07;7!UBERON:0009142;5.08e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0001310,4.05e-40,4;UBERON:0010260,4.97e-40,9;UBERON:0001638,1.35e-18,9;UBERON:0003920,1.35e-18,9;UBERON:0004582,1.35e-18,9;UBERON:0007500,2.13e-11,59;UBERON:0001981,2.13e-11,59;UBERON:0004537,2.13e-11,59;UBERON:0006965,2.13e-11,59;UBERON:0000055,5.60e-10,68;UBERON:0002066,2.74e-09,5;UBERON:0002049,8.84e-09,78;UBERON:0007798,8.84e-09,78;UBERON:0004872,2.75e-08,83;UBERON:0003422,5.54e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53316637465883,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,5.543663110534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01455188481352,1.8589409885985,0.563391205064483,2.29458163526482,0.392996164052485,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr12:65928345..65928348,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:65928345..65928348,- | |||
|id=chr12:65928345..65928348,- | |||
|ontology_enrichment_celltype=CL:0002594!8.72e-43!4;CL:0002588!2.06e-22!2;CL:0000359!1.22e-11!32;CL:0000393!2.27e-10!60;CL:0000211!2.27e-10!60;CL:0000187!5.64e-09!54;CL:0000192!9.06e-09!42;CL:0000514!9.06e-09!42;CL:0000680!1.82e-08!57;CL:0000056!1.82e-08!57;CL:0000355!1.82e-08!57;CL:0000183!3.72e-08!59;CL:0002543!4.19e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0002594;4.05e-40;4!CL:0002588;3.81e-21;2!CL:0000359;9.29e-11;32!CL:0002569;5.54e-08;6!CL:0002543;6.78e-08;6!CL:0000192;3.58e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002594,4.05e-40,4;CL:0002588,3.81e-21,2;CL:0000359,6.12e-12,32;CL:0000192,4.33e-09,43;CL:0000514,4.33e-09,43;CL:0002569,5.54e-08,6;CL:0002543,6.78e-08,6;CL:0000187,2.87e-07,55;CL:0000680,6.27e-07,58;CL:0000056,6.27e-07,58;CL:0000355,6.27e-07,58 | |||
|ontology_enrichment_development_v019=CL:0000514;3.58e-07;43!CL:0000355;9.18e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001310!8.72e-43!4;UBERON:0001638!2.52e-19!9;UBERON:0003920!2.52e-19!9;UBERON:0004582!2.52e-19!9;UBERON:0001981!1.77e-10!60;UBERON:0007500!1.77e-10!60;UBERON:0004537!1.77e-10!60;UBERON:0006965!1.77e-10!60;UBERON:0002066!1.55e-09!5;UBERON:0000055!5.47e-09!69;UBERON:0001134!7.27e-08!61;UBERON:0002036!7.27e-08!61;UBERON:0003082!7.27e-08!61;UBERON:0002049!9.95e-08!79;UBERON:0007798!9.95e-08!79;UBERON:0002385!1.36e-07!63;UBERON:0001015!1.36e-07!63;UBERON:0000383!1.36e-07!63;UBERON:0004872!3.28e-07!84;UBERON:0004290!9.21e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001310;4.05e-40;4!UBERON:0010260;4.97e-40;9!UBERON:0001638;1.35e-18;9!UBERON:0003920;1.35e-18;9!UBERON:0004582;1.35e-18;9!UBERON:0002066;2.74e-09;5!UBERON:0003422;5.54e-08;6!UBERON:0002049;9.30e-08;75!UBERON:0007798;9.30e-08;75!UBERON:0003104;5.08e-07;7!UBERON:0009142;5.08e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001310,4.05e-40,4;UBERON:0010260,4.97e-40,9;UBERON:0001638,1.35e-18,9;UBERON:0003920,1.35e-18,9;UBERON:0004582,1.35e-18,9;UBERON:0007500,2.13e-11,59;UBERON:0001981,2.13e-11,59;UBERON:0004537,2.13e-11,59;UBERON:0006965,2.13e-11,59;UBERON:0000055,5.60e-10,68;UBERON:0002066,2.74e-09,5;UBERON:0002049,8.84e-09,78;UBERON:0007798,8.84e-09,78;UBERON:0004872,2.75e-08,83;UBERON:0003422,5.54e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53316637465883,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,5.543663110534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.664225598535437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.01455188481352,1.8589409885985,0.563391205064483,2.29458163526482,0.392996164052485,0.35667105148125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101998217636322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:65928345..65928348,- | |||
}} |
Revision as of 23:58, 10 September 2013
Short description: | p@chr12:65928345..65928348, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:65928345..65928348, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the umbilical artery | 4.05e-40 | 4 |
smooth muscle cell of the umbilical vein | 3.81e-21 | 2 |
vascular associated smooth muscle cell | 6.12e-12 | 32 |
smooth muscle cell | 4.33e-09 | 43 |
smooth muscle myoblast | 4.33e-09 | 43 |
mesenchymal stem cell of umbilical cord | 5.54e-08 | 6 |
vein endothelial cell | 6.78e-08 | 6 |
muscle cell | 2.87e-07 | 55 |
muscle precursor cell | 6.27e-07 | 58 |
myoblast | 6.27e-07 | 58 |
multi-potent skeletal muscle stem cell | 6.27e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
umbilical artery | 4.05e-40 | 4 |
umbilical blood vessel | 4.97e-40 | 9 |
vein | 1.35e-18 | 9 |
venous blood vessel | 1.35e-18 | 9 |
venous system | 1.35e-18 | 9 |
epithelial tube open at both ends | 2.13e-11 | 59 |
blood vessel | 2.13e-11 | 59 |
blood vasculature | 2.13e-11 | 59 |
vascular cord | 2.13e-11 | 59 |
vessel | 5.60e-10 | 68 |
umbilical vein | 2.74e-09 | 5 |
vasculature | 8.84e-09 | 78 |
vascular system | 8.84e-09 | 78 |
splanchnic layer of lateral plate mesoderm | 2.75e-08 | 83 |
mesenchyme of umbilical cord | 5.54e-08 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.