FFCP PHASE1:Hg19::chr13:110958124..110958146,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1284|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2203|TSSclassifier=S|UniProt=A2A352|association_with_transcript=-12bp_to_ENST00000400163_5end|description=CAGE_peak_11_at_COL4A2_5end|id=chr13:110958124..110958146,+|ontology_enrichment_celltype=CL:0000136!1.01e-08!15;CL:0000055!2.11e-07!180;CL:0000325!3.49e-07!39|ontology_enrichment_celltype_v019=CL:0000136;7.32e-16;13!CL:0000708;1.65e-13;3!CL:0000669;1.97e-10;4!CL:0002549;2.63e-10;2!CL:0002575;6.03e-10;2!CL:0002554;6.74e-10;2!CL:0000327;7.30e-07;15!CL:0002521;8.13e-07;3|ontology_enrichment_celltype_v019_2=CL:0000136,1.13e-13,15;CL:0000708,5.03e-13,3;CL:0000669,1.18e-10,4;CL:0002549,2.21e-10,2;CL:0002575,3.63e-10,2;CL:0002554,7.39e-10,2;CL:0002521,5.33e-07,3;CL:0000327,9.75e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001009!3.03e-09!113;UBERON:0002417!6.04e-09!61;UBERON:0000916!6.04e-09!61;UBERON:0004535!1.45e-08!110;UBERON:0002049!1.87e-08!79;UBERON:0007798!1.87e-08!79;UBERON:0003887!2.48e-08!21;UBERON:0003914!1.76e-07!118;UBERON:0000080!2.43e-07!18;UBERON:0002120!2.43e-07!18;UBERON:0004875!2.43e-07!18;UBERON:0005721!2.43e-07!18;UBERON:0005754!2.43e-07!18;UBERON:0007297!2.43e-07!18;UBERON:0000353!7.52e-07!17|ontology_enrichment_uberon_v019=UBERON:0003210;1.65e-13;3!UBERON:0002331;3.84e-11;10!UBERON:0005629;2.63e-10;2!UBERON:0005358;2.63e-10;2!UBERON:0001886;2.63e-10;2!UBERON:0004086;2.63e-10;2!UBERON:0005282;2.63e-10;2!UBERON:0005281;2.63e-10;2!UBERON:0001473;8.42e-09;8!UBERON:0004536;8.42e-09;8!UBERON:0006558;8.42e-09;8!UBERON:0005284;1.23e-08;5!UBERON:0002465;4.75e-07;10!UBERON:0002190;8.13e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0003210,5.03e-13,3;UBERON:0002331,4.20e-11,10;UBERON:0000358,4.20e-11,10;UBERON:0000307,4.20e-11,10;UBERON:0000091,4.20e-11,10;UBERON:0000087,4.20e-11,10;UBERON:0007010,4.20e-11,10;UBERON:0007806,4.20e-11,10;UBERON:0008780,4.20e-11,10;UBERON:0005728,4.20e-11,10;UBERON:0005629,2.21e-10,2;UBERON:0005358,2.21e-10,2;UBERON:0001886,2.21e-10,2;UBERON:0004086,2.21e-10,2;UBERON:0005282,2.21e-10,2;UBERON:0005281,2.21e-10,2;UBERON:0005284,9.12e-09,5;UBERON:0001473,9.18e-09,8;UBERON:0004536,9.18e-09,8;UBERON:0006558,9.18e-09,8;UBERON:0004535,1.61e-07,109;UBERON:0001009,3.20e-07,112;UBERON:0002465,5.09e-07,10;UBERON:0002190,5.33e-07,3|phase1_expression=0.181678379270557,1.2846031433459,0.986680828671798,0,0.446961094427288,0.872338524100369,0,1.89515962028049,3.91778442299758,0.491467873003018,0,0,0,0,0,0,0,0,1.46379839637152,0.123121058076788,0,0.313454721478088,0,0,0.502170558379211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15076305659177,0,0,0.144846518960824,0,0,0.0945348171640679,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0.258416759169329,0,0,0.805658634218294,0,0.488124115096339,0,0,0,0,0,0,0,0,0,0,0,0.993943903390637,0.506522046658319,0.397227542439656,0,0.354668382198357,0,0,1.72667283892012,0,0.404132016209064,0.490385709340376,8.62737337576109,2.88087962239999,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0.247266929278557,5.46096817162816,1.43723628363248,0,0,0,0,0,0.300476117813194,0.567160915800105,0.358779271377724,0.213557388818567,0,0,0,0.257640540045629,0.37223371266318,0.168776332241266,0,0.504867548488229,0.0920498986422993,0,0,0,0,0,0,0,0,0,0.348581828608555,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,1.40241773803446,0.8231480226628,1.47008711385542,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0.579652024875384,2.93521735589554,1.44366447761074,0.925971025153221,1.33177906564219,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0.102827492703324,0.600686115687835,0,1.00917975910825,2.1798003441664,1.10007428731425,0.646358578788889,0,0.845302752556,1.06375246633948,0,0,0,0,0.714889968290738,0.542621605391443,0,0.65147236858747,0.710783897485092,0,0,0,0.899756920638513,0,0,0,1.4377491329495,5.7430967917057,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0,0,0,0,0,0,0,0.207970861530807,0,0.157702415033935,0,0,0,0,1.32845119707087,0,0,9.39845555821155,1.71571711905428,0,0,0,0,0,0,0.248107807818777,0.61384789315225,0,0.384417447767103,0.511707249066704,0.482561763430822,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0.902399225814824,0.693138033939733,1.56869953835371,0,2.63879072232189,0,0.170093705276516,0.863663664408557,3.08454505380579,0.812839312631559,1.50506932156456,0,0,0.671624264166535,0,0,0,0.328014645699706,0,0.309123034943167,0,0,0.574265537996172,0,0,0.193341436584244,0.154048617114644,0,0,0,0,0.0852266274161009,0.0890320356467374,0,0,0,0,0,0.31481234683064,0,0.308033580176089,1.06461206063404,0,0,0.143124886741991,0.372158369359667,1.58189712359363,0.38126038784765,0,0,0,0,0,0.54907405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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1284 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2203 | |||
|TSSclassifier=S | |||
|UniProt=A2A352 | |||
|association_with_transcript=-12bp_to_ENST00000400163_5end | |||
|description=CAGE_peak_11_at_COL4A2_5end | |||
|id=chr13:110958124..110958146,+ | |||
|ontology_enrichment_celltype=CL:0000136!1.01e-08!15;CL:0000055!2.11e-07!180;CL:0000325!3.49e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0000136;7.32e-16;13!CL:0000708;1.65e-13;3!CL:0000669;1.97e-10;4!CL:0002549;2.63e-10;2!CL:0002575;6.03e-10;2!CL:0002554;6.74e-10;2!CL:0000327;7.30e-07;15!CL:0002521;8.13e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,1.13e-13,15;CL:0000708,5.03e-13,3;CL:0000669,1.18e-10,4;CL:0002549,2.21e-10,2;CL:0002575,3.63e-10,2;CL:0002554,7.39e-10,2;CL:0002521,5.33e-07,3;CL:0000327,9.75e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001009!3.03e-09!113;UBERON:0002417!6.04e-09!61;UBERON:0000916!6.04e-09!61;UBERON:0004535!1.45e-08!110;UBERON:0002049!1.87e-08!79;UBERON:0007798!1.87e-08!79;UBERON:0003887!2.48e-08!21;UBERON:0003914!1.76e-07!118;UBERON:0000080!2.43e-07!18;UBERON:0002120!2.43e-07!18;UBERON:0004875!2.43e-07!18;UBERON:0005721!2.43e-07!18;UBERON:0005754!2.43e-07!18;UBERON:0007297!2.43e-07!18;UBERON:0000353!7.52e-07!17 | |||
|ontology_enrichment_uberon_v019=UBERON:0003210;1.65e-13;3!UBERON:0002331;3.84e-11;10!UBERON:0005629;2.63e-10;2!UBERON:0005358;2.63e-10;2!UBERON:0001886;2.63e-10;2!UBERON:0004086;2.63e-10;2!UBERON:0005282;2.63e-10;2!UBERON:0005281;2.63e-10;2!UBERON:0001473;8.42e-09;8!UBERON:0004536;8.42e-09;8!UBERON:0006558;8.42e-09;8!UBERON:0005284;1.23e-08;5!UBERON:0002465;4.75e-07;10!UBERON:0002190;8.13e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003210,5.03e-13,3;UBERON:0002331,4.20e-11,10;UBERON:0000358,4.20e-11,10;UBERON:0000307,4.20e-11,10;UBERON:0000091,4.20e-11,10;UBERON:0000087,4.20e-11,10;UBERON:0007010,4.20e-11,10;UBERON:0007806,4.20e-11,10;UBERON:0008780,4.20e-11,10;UBERON:0005728,4.20e-11,10;UBERON:0005629,2.21e-10,2;UBERON:0005358,2.21e-10,2;UBERON:0001886,2.21e-10,2;UBERON:0004086,2.21e-10,2;UBERON:0005282,2.21e-10,2;UBERON:0005281,2.21e-10,2;UBERON:0005284,9.12e-09,5;UBERON:0001473,9.18e-09,8;UBERON:0004536,9.18e-09,8;UBERON:0006558,9.18e-09,8;UBERON:0004535,1.61e-07,109;UBERON:0001009,3.20e-07,112;UBERON:0002465,5.09e-07,10;UBERON:0002190,5.33e-07,3 | |||
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|short_description=p11@COL4A2 | |||
}} |
Revision as of 01:28, 11 September 2013
Short description: | p11@COL4A2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_11_at_COL4A2_5end |
Coexpression cluster: | NA |
Association with transcript: | -12bp_to_ENST00000400163_5end |
EntrezGene: | COL4A2 |
HGNC: | 2203 |
UniProt: | A2A352 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 1.13e-13 | 15 |
leptomeningeal cell | 5.03e-13 | 3 |
pericyte cell | 1.18e-10 | 4 |
fibroblast of choroid plexus | 2.21e-10 | 2 |
central nervous system pericyte | 3.63e-10 | 2 |
fibroblast of lymphatic vessel | 7.39e-10 | 2 |
subcutaneous fat cell | 5.33e-07 | 3 |
extracellular matrix secreting cell | 9.75e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
blood-cerebrospinal fluid barrier | 5.03e-13 | 3 |
umbilical cord | 4.20e-11 | 10 |
blastocyst | 4.20e-11 | 10 |
blastula | 4.20e-11 | 10 |
bilaminar disc | 4.20e-11 | 10 |
inner cell mass | 4.20e-11 | 10 |
cleaving embryo | 4.20e-11 | 10 |
connecting stalk | 4.20e-11 | 10 |
inner cell mass derived epiblast | 4.20e-11 | 10 |
extraembryonic mesoderm | 4.20e-11 | 10 |
vascular plexus | 2.21e-10 | 2 |
ventricle of nervous system | 2.21e-10 | 2 |
choroid plexus | 2.21e-10 | 2 |
brain ventricle | 2.21e-10 | 2 |
ventricular system of brain | 2.21e-10 | 2 |
ventricular system of central nervous system | 2.21e-10 | 2 |
brain vasculature | 9.12e-09 | 5 |
lymphatic vessel | 9.18e-09 | 8 |
lymph vasculature | 9.18e-09 | 8 |
lymphatic part of lymphoid system | 9.18e-09 | 8 |
cardiovascular system | 1.61e-07 | 109 |
circulatory system | 3.20e-07 | 112 |
lymphoid system | 5.09e-07 | 10 |
subcutaneous adipose tissue | 5.33e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.