FFCP PHASE1:Mm9::chr10:127105928..127105939,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=17937|HGNC=|UniProt=D3Z008|association_with_transcript=-304bp_to_ENSMUST00000129252_5end|description=CAGE_peak_5_at_Nab2_5end|id=chr10:127105928..127105939,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000222,3.35e-12,7;CL:0000192,2.52e-11,3;CL:0000359,2.52e-11,3;CL:0002539,2.52e-11,3;CL:0000514,2.52e-11,3;CL:0000680,2.57e-09,6;CL:0000187,2.57e-09,6;CL:0000056,2.57e-09,6;CL:0002476,1.96e-07,2|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.14e-11,5;UBERON:0007500,1.14e-11,5;UBERON:0001981,1.14e-11,5;UBERON:0002049,1.14e-11,5;UBERON:0007798,1.14e-11,5;UBERON:0004537,1.14e-11,5;UBERON:0006965,1.14e-11,5;UBERON:0001135,2.52e-11,3;UBERON:0004237,2.52e-11,3;UBERON:0004695,2.52e-11,3;UBERON:0002111,2.52e-11,3;UBERON:0004178,2.52e-11,3;UBERON:0000947,1.35e-08,4;UBERON:0001637,1.35e-08,4;UBERON:0004573,1.35e-08,4;UBERON:0003509,1.35e-08,4;UBERON:0004571,1.35e-08,4;UBERON:0010191,1.35e-08,4;UBERON:0004572,1.35e-08,4|phase1_expression=0.160148847104794,0,0,0,0,0,0,1.16210991097419,1.97104211012333,1.87251621057595,0.171217968225505,0.398860794976682,0.684802919724823,0.437102012094987,0,0,0,0,0,0.42438965179803,0.510259740906419,0.397163804803541,0,0,0,0,0,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0,0,0,0,0,0,2.7697299954627,1.72340783073175,2.20256102594018,2.34717403304412,0.218025156380447,0.659058548203415,0.972149495371417,0.419959264876088,2.87505128729943,0.335565212115473,0,1.00828139742739,0.257259436035947,0,1.03134418455488,0,0,0,0,0,0.449949858640699,0.988866362566974,0.7104801149461,0.599200221036809,0.384218305321555,0.414758449233911,0.675029691658453,0,0,0.441737081903227,0.244981598429908,0,0,0,0.255374676170375,0.153606533256243,0.131886287730194,0,0,0,0,0.30559649555362,0,0.284743361598206,0,0.075726193333184,0,2.31891590961342,0,0,0,0,0,0.140444420131752,0.852151612890289,1.03914401841148,1.06001872353102,0.14084341977668,2.56652954828636,0,0,0.216491041011214,0.760079596425296,3.0331466700887,0.11418387971906,0.517875767294343,0.445326417194474,0,0,0,0.753613202763113,0.23517741427141,0.251333182659351,0.247194967734374,0.144599356919912,0,0.323533699894818,0,0,0,1.46390398505774,0.628340120440365,0,0.838705871541442,0.599902730993408,0.635351135365324,0,0,0.251308704225729,0.173824320192276,0,0.20778804455956,0,0.305518091550949,0.124406970610093,0.252722758433675,0.210441855886474,0.390361328888111,0.229902104433473,0,0.150704817835715,0.340182495756639,0.384341160854549,0.0937017245597288,0.258703370739016,0.646703978798527,0.756424320671277,0.879755620819744,0.43839146485515,0.556094498451196,0.696504333044333,0.411564272815887,0.398068533636986,0,0.257347907114715,0.568326998791185,0,0,0.900310307305074,0,0.590292695242212,0.308534225774757,0,0.268273401399619,0.583826711835847,0,0.32833492815819,0.324275238183423,0.292399974850665,0,0.134206418760372,0.630869845692382,0.823236899034275,0,0,0.639864751605702,0.464473343720877,0,0,0.22237804384487,0,0,0,0,0.198956472041151,0,0,0,0,0.189667900953082,0.228497025219458,1.1270773567308,0.407302655690628,0.193952487167626,0.140271639780637,0.0632365371242573,0.295220295959204,0.156998727841375,0,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.325929952884052,0.169745085775188,0.469380496577004,0.837531287209079,1.19021820443007,0.390267295715598,0.472905432318573,1.10732344824387,0.318909537314974,0.163863314715738,0.172684981865896,0.867894351489069,1.50791283939272,1.08781136763742,0,0,0,0.35163505977661,0.163934945376675,0.252470927204373,0.94652465824877,1.17131623288992,0.861693590931196,0,0.445597348164788,0.849229592366497,0.404810701674894,0.292255857911312,1.18586333383957,0.642642632843614,0.141940085208269,0.35613120733451,0.651547837414304,0.659880491890142,0,0.242780636154981,0.302323556964751,0,0.295301892880773,0,0.516856586336442,0.363533729477506,0,0.632073515871632,0,0,0.340439605753788,0.18006109403131,0.258717367565509,0.214337035031592,0.177340233642274,0.356737635204141,0.164549020602121,0.304464949114599,0.23467170806371,0.42366414172764,0.661585194164886,0.65954501176592,0.161464426695906,0.241251699712623,0.238744688006273,0,0,0,0,0.619160603889667,0.185194527369712,0.188368457004691,0.136694227721025,0,0.849892149969277,1.95932033253121,0.552799895217695,0.954670618015114,0.316335993581135,0.203319467126849,0.324016022465404,0.627264888043406,0,0,0.165306911450672,0.26175594198403,0,0,0.56369293868419,0.149516546043979,0.165458490457098,0.777804753376191,0.387479470433193,0.337912250981556,0.469428954583016,0.13020438484395,0.314578033277133,2.65742532908607,1.15212002503146,0,0,0.205421914329655,0,0.179026695667481,0.39736270956253,0.600977247599844,0.295379054349154,0.100966449948148,0.381034033274999,0.201652370273681,0.194915761479505,0.0962118416403295,0.350630706544707,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| ||
|EntrezGene=17937 | |||
|HGNC= | |||
|UniProt=D3Z008 | |||
|association_with_transcript=-304bp_to_ENSMUST00000129252_5end | |||
|description=CAGE_peak_5_at_Nab2_5end | |||
|id=chr10:127105928..127105939,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000222,3.35e-12,7;CL:0000192,2.52e-11,3;CL:0000359,2.52e-11,3;CL:0002539,2.52e-11,3;CL:0000514,2.52e-11,3;CL:0000680,2.57e-09,6;CL:0000187,2.57e-09,6;CL:0000056,2.57e-09,6;CL:0002476,1.96e-07,2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000055,1.14e-11,5;UBERON:0007500,1.14e-11,5;UBERON:0001981,1.14e-11,5;UBERON:0002049,1.14e-11,5;UBERON:0007798,1.14e-11,5;UBERON:0004537,1.14e-11,5;UBERON:0006965,1.14e-11,5;UBERON:0001135,2.52e-11,3;UBERON:0004237,2.52e-11,3;UBERON:0004695,2.52e-11,3;UBERON:0002111,2.52e-11,3;UBERON:0004178,2.52e-11,3;UBERON:0000947,1.35e-08,4;UBERON:0001637,1.35e-08,4;UBERON:0004573,1.35e-08,4;UBERON:0003509,1.35e-08,4;UBERON:0004571,1.35e-08,4;UBERON:0010191,1.35e-08,4;UBERON:0004572,1.35e-08,4 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,1.16210991097419,1.97104211012333,1.87251621057595,0.171217968225505,0.398860794976682,0.684802919724823,0.437102012094987,0,0,0,0,0,0.42438965179803,0.510259740906419,0.397163804803541,0,0,0,0,0,0,0,0,0,0.635030673459631,0.61506478758457,0,0,0,0,0,0,0,0,0,0,2.7697299954627,1.72340783073175,2.20256102594018,2.34717403304412,0.218025156380447,0.659058548203415,0.972149495371417,0.419959264876088,2.87505128729943,0.335565212115473,0,1.00828139742739,0.257259436035947,0,1.03134418455488,0,0,0,0,0,0.449949858640699,0.988866362566974,0.7104801149461,0.599200221036809,0.384218305321555,0.414758449233911,0.675029691658453,0,0,0.441737081903227,0.244981598429908,0,0,0,0.255374676170375,0.153606533256243,0.131886287730194,0,0,0,0,0.30559649555362,0,0.284743361598206,0,0.075726193333184,0,2.31891590961342,0,0,0,0,0,0.140444420131752,0.852151612890289,1.03914401841148,1.06001872353102,0.14084341977668,2.56652954828636,0,0,0.216491041011214,0.760079596425296,3.0331466700887,0.11418387971906,0.517875767294343,0.445326417194474,0,0,0,0.753613202763113,0.23517741427141,0.251333182659351,0.247194967734374,0.144599356919912,0,0.323533699894818,0,0,0,1.46390398505774,0.628340120440365,0,0.838705871541442,0.599902730993408,0.635351135365324,0,0,0.251308704225729,0.173824320192276,0,0.20778804455956,0,0.305518091550949,0.124406970610093,0.252722758433675,0.210441855886474,0.390361328888111,0.229902104433473,0,0.150704817835715,0.340182495756639,0.384341160854549,0.0937017245597288,0.258703370739016,0.646703978798527,0.756424320671277,0.879755620819744,0.43839146485515,0.556094498451196,0.696504333044333,0.411564272815887,0.398068533636986,0,0.257347907114715,0.568326998791185,0,0,0.900310307305074,0,0.590292695242212,0.308534225774757,0,0.268273401399619,0.583826711835847,0,0.32833492815819,0.324275238183423,0.292399974850665,0,0.134206418760372,0.630869845692382,0.823236899034275,0,0,0.639864751605702,0.464473343720877,0,0,0.22237804384487,0,0,0,0,0.198956472041151,0,0,0,0,0.189667900953082,0.228497025219458,1.1270773567308,0.407302655690628,0.193952487167626,0.140271639780637,0.0632365371242573,0.295220295959204,0.156998727841375,0,0,0,0.196558995113203,0.224862112384854,0.202860121388503,0,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0.189491411770485,0.325929952884052,0.169745085775188,0.469380496577004,0.837531287209079,1.19021820443007,0.390267295715598,0.472905432318573,1.10732344824387,0.318909537314974,0.163863314715738,0.172684981865896,0.867894351489069,1.50791283939272,1.08781136763742,0,0,0,0.35163505977661,0.163934945376675,0.252470927204373,0.94652465824877,1.17131623288992,0.861693590931196,0,0.445597348164788,0.849229592366497,0.404810701674894,0.292255857911312,1.18586333383957,0.642642632843614,0.141940085208269,0.35613120733451,0.651547837414304,0.659880491890142,0,0.242780636154981,0.302323556964751,0,0.295301892880773,0,0.516856586336442,0.363533729477506,0,0.632073515871632,0,0,0.340439605753788,0.18006109403131,0.258717367565509,0.214337035031592,0.177340233642274,0.356737635204141,0.164549020602121,0.304464949114599,0.23467170806371,0.42366414172764,0.661585194164886,0.65954501176592,0.161464426695906,0.241251699712623,0.238744688006273,0,0,0,0,0.619160603889667,0.185194527369712,0.188368457004691,0.136694227721025,0,0.849892149969277,1.95932033253121,0.552799895217695,0.954670618015114,0.316335993581135,0.203319467126849,0.324016022465404,0.627264888043406,0,0,0.165306911450672,0.26175594198403,0,0,0.56369293868419,0.149516546043979,0.165458490457098,0.777804753376191,0.387479470433193,0.337912250981556,0.469428954583016,0.13020438484395,0.314578033277133,2.65742532908607,1.15212002503146,0,0,0.205421914329655,0,0.179026695667481,0.39736270956253,0.600977247599844,0.295379054349154,0.100966449948148,0.381034033274999,0.201652370273681,0.194915761479505,0.0962118416403295,0.350630706544707,0.226730383615211,0.665957860122194,1.07656627931371,0.167884616364078,0.772758376128762,0,0.183151624267265,0.428736758158132,0,0,0,0,0.515559547031063,0,0,0,0,0.453142408984205,0,0.207574695168353,0.399024873401031,0.682934423016537,0.486213434136588,0.209613162627982,0.551530525350042,0,0.206035057238894,0.64183841918363,0,0.50695859978048,0,0.749132059759059,0.384150914429216,0.229741875822453,0.476293691283074,0,0.578727661391115,0.824171801606613,0.588795680537589,0,0,0,0.726732083161643,0.470546902076653,0.423073039458382,0.182927972872773,0.789209134313529,0.543216455383447,0.561142271657738,0.474540072496697,0.394017929502254,0,0.619747364743864,0.771626443924566,0,0,0.429742108096597,0.57386499620653,0.220591419119515,0 | |||
|short_description=p5@Nab2 | |||
}} |
Revision as of 16:04, 12 September 2013
Short description: | p5@Nab2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Nab2_5end |
Coexpression cluster: | NA |
Association with transcript: | -304bp_to_ENSMUST00000129252_5end |
EntrezGene: | Nab2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mesodermal cell | 3.35e-12 | 7 |
smooth muscle cell | 2.52e-11 | 3 |
vascular associated smooth muscle cell | 2.52e-11 | 3 |
aortic smooth muscle cell | 2.52e-11 | 3 |
smooth muscle myoblast | 2.52e-11 | 3 |
muscle precursor cell | 2.57e-09 | 6 |
muscle cell | 2.57e-09 | 6 |
myoblast | 2.57e-09 | 6 |
bone marrow macrophage | 1.96e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
vessel | 1.14e-11 | 5 |
epithelial tube open at both ends | 1.14e-11 | 5 |
blood vessel | 1.14e-11 | 5 |
vasculature | 1.14e-11 | 5 |
vascular system | 1.14e-11 | 5 |
blood vasculature | 1.14e-11 | 5 |
vascular cord | 1.14e-11 | 5 |
smooth muscle tissue | 2.52e-11 | 3 |
blood vessel smooth muscle | 2.52e-11 | 3 |
arterial system smooth muscle | 2.52e-11 | 3 |
artery smooth muscle tissue | 2.52e-11 | 3 |
aorta smooth muscle tissue | 2.52e-11 | 3 |
aorta | 1.35e-08 | 4 |
artery | 1.35e-08 | 4 |
systemic artery | 1.35e-08 | 4 |
arterial blood vessel | 1.35e-08 | 4 |
systemic arterial system | 1.35e-08 | 4 |
aortic system | 1.35e-08 | 4 |
arterial system | 1.35e-08 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.