FFCP PHASE1:Mm9::chr10:19653404..19653419,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=7|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr10:19653404..19653419,+|id=chr10:19653404..19653419,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0000893,2.54e-08,6;CL:0002489,2.54e-08,6;CL:0000898,2.54e-08,6;CL:0000809,2.54e-08,6;CL:0000810,2.54e-08,6;CL:0000895,2.54e-08,6;CL:0000808,2.54e-08,6;CL:0000894,2.54e-08,6;CL:0000806,2.54e-08,6;CL:0000807,2.54e-08,6;CL:0000805,2.54e-08,6;CL:0002425,2.54e-08,6;CL:0002436,2.54e-08,6;CL:0002427,2.54e-08,6;CL:0002428,2.54e-08,6;CL:0002429,2.54e-08,6;CL:0002433,2.54e-08,6;CL:0002431,2.54e-08,6;CL:0002432,2.54e-08,6|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004535!2.05e-12!23;UBERON:0001009!2.05e-12!23;UBERON:0007100!4.53e-12!18;UBERON:0000948!4.53e-12!18;UBERON:0005498!4.53e-12!18;UBERON:0004140!4.53e-12!18;UBERON:0009881!4.53e-12!18;UBERON:0004141!4.53e-12!18;UBERON:0003084!4.53e-12!18;UBERON:0007005!4.53e-12!18;UBERON:0004139!4.53e-12!18;UBERON:0004291!4.53e-12!18;UBERON:0004872!4.14e-08!33;UBERON:0003914!1.16e-07!47|ontology_enrichment_uberon_v019_2=UBERON:0007100,6.37e-32,18;UBERON:0000948,6.37e-32,18;UBERON:0005498,6.37e-32,18;UBERON:0004140,6.37e-32,18;UBERON:0009881,6.37e-32,18;UBERON:0004141,6.37e-32,18;UBERON:0003084,6.37e-32,18;UBERON:0007005,6.37e-32,18;UBERON:0004139,6.37e-32,18;UBERON:0004291,6.37e-32,18;UBERON:0004535,1.44e-27,23;UBERON:0001009,1.44e-27,23;UBERON:0004872,3.86e-18,33;UBERON:0003914,2.35e-13,47;UBERON:0003103,1.91e-11,43;UBERON:0003081,1.12e-08,87|phase1_expression=0,0,0,0,0,0.16787927191189,0,0.516493293766305,35.47875798222,29.4921303165712,2.22583358693156,2.87179772383211,0,0,0,0.202475267389826,0,0.315462165358238,0,0,0.0850432901510698,0.0992909512008853,0,0.159992422793407,0,0,0.430761996159075,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0,0,0,0,0,1.00669563634642,0.725362142011344,0,0,0.286533439938757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,1.15945795480671,0,0.679971333707751,0,0,1.34408066129201,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0,0.304465478312141,0,0.150722640552623,0,0,0,0.289198713839823,0,0.161766849947409,0.662524555381181,0.969750506270444,0,0,0.209446706813455,0,2.63593273913025,1.79970819298022,1.27070227073065,0,0,0,0.173824320192276,0,0,0,0,0.497627882440372,0.252722758433675,0,0.130120442962704,0,0,0,0,0.12811372028485,0,0.258703370739016,0,0,0,0.219195732427575,0,0,0,0,0,0.51469581422943,0.568326998791185,1.03562886267751,2.34526059981096,1.98068267607116,1.18372367792605,1.37734962223183,1.23413690309903,2.32533944750408,3.48755421819505,1.16765342367169,2.63295759861569,2.95501435342371,2.10778904819225,3.36259971078264,3.07370161407471,2.54992195644706,0,0,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0.126473074248515,0.147610147979602,0,0.246794327843601,0.592905254174298,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0.482443521363367,0,0.189491411770485,0.325929952884052,0,0,0,0,0.195133647857799,0,0,0.159454768657487,0.655453258862952,0,0.144649058581512,0,0,0,0,0,0,0,0.757412781613119,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0.242780636154981,0.302323556964751,0.188605079755898,0,0,1.03371317267288,0.363533729477506,0,1.26414703174326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.120625849856312,0,0,0.582961673259701,0,0,0,0,0,0,0.228778173206523,5.60928818979723,1.6794174278839,3.73139929271944,0,0,0,0,0.209088296014469,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0.149516546043979,0,0,0,0.168956125490778,0,0.13020438484395,0,0,0,0,0.202725215290164,0,0.25984164595559,0.179026695667481,0,0,0,0.100966449948148,0.0762068066549998,0,0.292373642219257,0,0.116876902181569,0.453460767230423,0,0,0,0.19318959403219,0,0,0,0,1.12950368523413,0.920650473014354,0.572895513439397,0.68741272937475,1.37016503954128,0,0,0.45032120322422,1.35942722695261,0.51776031175182,0,0,0,0.729320151204882,0.209613162627982,0.367687016900028,0,0,0,0,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0,0,0.169229215783353,0.182927972872773,0,0,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0.231867835620421|short_description=p@chr10:19653404..19653419,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr10:19653404..19653419,+ | |||
|id=chr10:19653404..19653419,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0000893,2.54e-08,6;CL:0002489,2.54e-08,6;CL:0000898,2.54e-08,6;CL:0000809,2.54e-08,6;CL:0000810,2.54e-08,6;CL:0000895,2.54e-08,6;CL:0000808,2.54e-08,6;CL:0000894,2.54e-08,6;CL:0000806,2.54e-08,6;CL:0000807,2.54e-08,6;CL:0000805,2.54e-08,6;CL:0002425,2.54e-08,6;CL:0002436,2.54e-08,6;CL:0002427,2.54e-08,6;CL:0002428,2.54e-08,6;CL:0002429,2.54e-08,6;CL:0002433,2.54e-08,6;CL:0002431,2.54e-08,6;CL:0002432,2.54e-08,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!2.05e-12!23;UBERON:0001009!2.05e-12!23;UBERON:0007100!4.53e-12!18;UBERON:0000948!4.53e-12!18;UBERON:0005498!4.53e-12!18;UBERON:0004140!4.53e-12!18;UBERON:0009881!4.53e-12!18;UBERON:0004141!4.53e-12!18;UBERON:0003084!4.53e-12!18;UBERON:0007005!4.53e-12!18;UBERON:0004139!4.53e-12!18;UBERON:0004291!4.53e-12!18;UBERON:0004872!4.14e-08!33;UBERON:0003914!1.16e-07!47 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007100,6.37e-32,18;UBERON:0000948,6.37e-32,18;UBERON:0005498,6.37e-32,18;UBERON:0004140,6.37e-32,18;UBERON:0009881,6.37e-32,18;UBERON:0004141,6.37e-32,18;UBERON:0003084,6.37e-32,18;UBERON:0007005,6.37e-32,18;UBERON:0004139,6.37e-32,18;UBERON:0004291,6.37e-32,18;UBERON:0004535,1.44e-27,23;UBERON:0001009,1.44e-27,23;UBERON:0004872,3.86e-18,33;UBERON:0003914,2.35e-13,47;UBERON:0003103,1.91e-11,43;UBERON:0003081,1.12e-08,87 | |||
|phase1_expression=0,0,0,0,0,0.16787927191189,0,0.516493293766305,35.47875798222,29.4921303165712,2.22583358693156,2.87179772383211,0,0,0,0.202475267389826,0,0.315462165358238,0,0,0.0850432901510698,0.0992909512008853,0,0.159992422793407,0,0,0.430761996159075,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,0,0,0,0,0,0,1.00669563634642,0.725362142011344,0,0,0.286533439938757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0958454710182364,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,1.15945795480671,0,0.679971333707751,0,0,1.34408066129201,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0,0.304465478312141,0,0.150722640552623,0,0,0,0.289198713839823,0,0.161766849947409,0.662524555381181,0.969750506270444,0,0,0.209446706813455,0,2.63593273913025,1.79970819298022,1.27070227073065,0,0,0,0.173824320192276,0,0,0,0,0.497627882440372,0.252722758433675,0,0.130120442962704,0,0,0,0,0.12811372028485,0,0.258703370739016,0,0,0,0.219195732427575,0,0,0,0,0,0.51469581422943,0.568326998791185,1.03562886267751,2.34526059981096,1.98068267607116,1.18372367792605,1.37734962223183,1.23413690309903,2.32533944750408,3.48755421819505,1.16765342367169,2.63295759861569,2.95501435342371,2.10778904819225,3.36259971078264,3.07370161407471,2.54992195644706,0,0,0,0,0.213288250535234,0.232236671860439,0,0,0,0,0,0,0,0,0.19496408711912,0,0,0,0,0,0,0,0,0,0.126473074248515,0.147610147979602,0,0.246794327843601,0.592905254174298,0.333690211432188,0,0,0,0,0,0,0,0,0,0,0,0.252578877947112,0,0.482443521363367,0,0.189491411770485,0.325929952884052,0,0,0,0,0.195133647857799,0,0,0.159454768657487,0.655453258862952,0,0.144649058581512,0,0,0,0,0,0,0,0.757412781613119,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0,0,0.242780636154981,0.302323556964751,0.188605079755898,0,0,1.03371317267288,0.363533729477506,0,1.26414703174326,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161464426695906,0.120625849856312,0,0,0.582961673259701,0,0,0,0,0,0,0.228778173206523,5.60928818979723,1.6794174278839,3.73139929271944,0,0,0,0,0.209088296014469,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0.149516546043979,0,0,0,0.168956125490778,0,0.13020438484395,0,0,0,0,0.202725215290164,0,0.25984164595559,0.179026695667481,0,0,0,0.100966449948148,0.0762068066549998,0,0.292373642219257,0,0.116876902181569,0.453460767230423,0,0,0,0.19318959403219,0,0,0,0,1.12950368523413,0.920650473014354,0.572895513439397,0.68741272937475,1.37016503954128,0,0,0.45032120322422,1.35942722695261,0.51776031175182,0,0,0,0.729320151204882,0.209613162627982,0.367687016900028,0,0,0,0,0.25347929989024,0,0.0936415074698824,0.0640251524048693,0,0,0,0.192909220463705,0,0.147198920134397,0,0,0,0,0,0.169229215783353,0.182927972872773,0,0,0,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,0,0,0.214871054048298,0.191288332068843,0.220591419119515,0.231867835620421 | |||
|short_description=p@chr10:19653404..19653419,+ | |||
}} |
Revision as of 16:22, 12 September 2013
Short description: | p@chr10:19653404..19653419, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr10:19653404..19653419, + |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymocyte | 2.54e-08 | 6 |
double negative thymocyte | 2.54e-08 | 6 |
naive T cell | 2.54e-08 | 6 |
double-positive, alpha-beta thymocyte | 2.54e-08 | 6 |
CD4-positive, alpha-beta thymocyte | 2.54e-08 | 6 |
naive thymus-derived CD4-positive, alpha-beta T cell | 2.54e-08 | 6 |
DN4 thymocyte | 2.54e-08 | 6 |
DN1 thymic pro-T cell | 2.54e-08 | 6 |
DN2 thymocyte | 2.54e-08 | 6 |
DN3 thymocyte | 2.54e-08 | 6 |
immature single positive thymocyte | 2.54e-08 | 6 |
early T lineage precursor | 2.54e-08 | 6 |
mature CD4 single-positive thymocyte | 2.54e-08 | 6 |
resting double-positive thymocyte | 2.54e-08 | 6 |
double-positive blast | 2.54e-08 | 6 |
CD69-positive double-positive thymocyte | 2.54e-08 | 6 |
CD69-positive, CD4-positive single-positive thymocyte | 2.54e-08 | 6 |
CD4-positive, CD8-intermediate double-positive thymocyte | 2.54e-08 | 6 |
CD24-positive, CD4 single-positive thymocyte | 2.54e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
primary circulatory organ | 6.37e-32 | 18 |
heart | 6.37e-32 | 18 |
primitive heart tube | 6.37e-32 | 18 |
primary heart field | 6.37e-32 | 18 |
anterior lateral plate mesoderm | 6.37e-32 | 18 |
heart tube | 6.37e-32 | 18 |
heart primordium | 6.37e-32 | 18 |
cardiac mesoderm | 6.37e-32 | 18 |
cardiogenic plate | 6.37e-32 | 18 |
heart rudiment | 6.37e-32 | 18 |
cardiovascular system | 1.44e-27 | 23 |
circulatory system | 1.44e-27 | 23 |
splanchnic layer of lateral plate mesoderm | 3.86e-18 | 33 |
epithelial tube | 2.35e-13 | 47 |
compound organ | 1.91e-11 | 43 |
lateral plate mesoderm | 1.12e-08 | 87 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.